3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 1.187

Ascend tree (bring in more domains)

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Classes% of representative set
undefined 26.53
All beta 2.04
All alpha 71.43
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 26.53 2.04
All beta
Immunoglobulin-like beta-sandwich from SCOP 2.04 0.45
All alpha
4-helical cytokines from SCOP 20.41 4.93
4-helical cytokines Short chain from 3Dee 2.04 0.49
Apolipophorin-III from SCOP 2.04 0.49
Ferritin like from 3Dee 6.12 1.48
Four-helical up-and-down bundle from SCOP 22.45 5.42
Glutathione S-transferases, C-terminal domain from SCOP 4.08 0.99
Long alpha-hairpin from SCOP 4.08 0.99
Methane monooxygenase hydrolase, gamma subunit from 3Dee 2.04 0.49
Methionine synthase domain from 3Dee 2.04 0.49
Oligomers of long helices from 3Dee 2.04 0.49
T4 endonuclease V from SCOP 2.04 0.49
Transducin (alpha subunit), insertion domain from SCOP 2.04 0.49

It is formed by merging the following clusters

Cluster 0

All domains in cluster 0 sub-divide into single membered clusters

1rmva-1 [seq. related domains] All alpha Four-helical up-and-down bundle

Cluster 1

Descend tree into cluster 1

2il6-1 [seq. related domains] All alpha 4-helical cytokines
1rhgc-1 [seq. related domains] All alpha 4-helical cytokines
1hik-1 [seq. related domains] All alpha 4-helical cytokines
1hmcb-1 [seq. related domains] All alpha 4-helical cytokines
1cnt4-1 [seq. related domains] All alpha 4-helical cytokines
1hwga-1 [seq. related domains] All alpha 4-helical cytokines
1au1b-1 [seq. related domains] All alpha 4-helical cytokines
2gmfb-1 [seq. related domains] All alpha 4-helical cytokines
1irl-1 [seq. related domains] All alpha 4-helical cytokines
1lki-1 [seq. related domains] All alpha 4-helical cytokines
1hulb-2 [seq. related domains] All alpha 4-helical cytokines Short chain
1aep-1 [seq. related domains] All alpha Apolipophorin-III
1ryt-1 [seq. related domains] All alpha Ferritin like
2fha-1 [seq. related domains] All alpha Ferritin like
1bfrx-1 [seq. related domains] All alpha Ferritin like
1hr3a-1 [seq. related domains] All alpha Four-helical up-and-down bundle
256ba-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1hr3b-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1vls-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1nfo-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1hr3c-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1eged-3 [seq. related domains] All alpha Four-helical up-and-down bundle
1jafb-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1knyb-2 [seq. related domains] All alpha Four-helical up-and-down bundle
1hmdb-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1gnwb-2 [seq. related domains] All alpha Glutathione S-transferases, C-terminal domain
1gukb-2 [seq. related domains] All alpha Glutathione S-transferases, C-terminal domain
3tf4b-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1ar5b-1 [seq. related domains] All alpha Long alpha-hairpin
1sesa-1 [seq. related domains] All alpha Long alpha-hairpin
1mtyh-1 [seq. related domains] All alpha Methane monooxygenase hydrolase, gamma subunit
1bmtb-1 [seq. related domains] All alpha Methionine synthase domain
1enva-1 [seq. related domains] All alpha Oligomers of long helices
1vasa-1 [seq. related domains] All alpha T4 endonuclease V
1as3-2 [seq. related domains] All alpha Transducin (alpha subunit), insertion domain
2a0b-1 [seq. related domains] undefined undefined
1agrh-1 [seq. related domains] undefined undefined
1higb-2 [seq. related domains] undefined undefined
1jli-1 [seq. related domains] undefined undefined
1efrg-1 [seq. related domains] undefined undefined
2pax-1 [seq. related domains] undefined undefined
1maz-1 [seq. related domains] undefined undefined
1nsgb-1 [seq. related domains] undefined undefined
1aa0-1 [seq. related domains] undefined undefined
1e2ac-1 [seq. related domains] undefined undefined
1gtoc-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1mnmb-1 [seq. related domains] undefined undefined
1bgw-4 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk