3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 0.574

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Classes% of representative set
undefined 30.14
Membrane and cell surface proteins and peptides 5.48
Alpha and beta (a/b) 1.37
Alpha and beta (a+b) 2.74
All beta 1.37
All alpha 58.90
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 30.14 3.46
Membrane and cell surface proteins and peptides
Membrane all-alpha from SCOP 1.37 9.09
Toxins' membrane translocation domains from SCOP 4.11 27.27
Alpha and beta (a/b)
gamma,delta Resolvase, large fragment from 3Dee 1.37 0.36
Alpha and beta (a+b)
Protein kinases (PK), catalytic core C terminal Domain from 3Dee 2.74 1.04
All beta
Immunoglobulin-like beta-sandwich from SCOP 1.37 0.45
All alpha
4-helical cytokines from SCOP 13.70 4.93
4-helical cytokines Short chain from 3Dee 1.37 0.49
Acyl-CoA dehydrogenase (flavoprotein), N-terminal domain from 3Dee 1.37 0.49
Apolipophorin-III from SCOP 1.37 0.49
Ferritin like from 3Dee 4.11 1.48
Four-helical up-and-down bundle from SCOP 15.07 5.42
Globin-like from SCOP 9.59 3.45
Glutathione S-transferases, C-terminal domain from SCOP 2.74 0.99
Long alpha-hairpin from SCOP 2.74 0.99
Methane monooxygenase hydrolase, gamma subunit from 3Dee 1.37 0.49
Methionine synthase domain from 3Dee 1.37 0.49
Oligomers of long helices from 3Dee 1.37 0.49
T4 endonuclease V from SCOP 1.37 0.49
Transducin (alpha subunit), insertion domain from SCOP 1.37 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

2il6-1 [seq. related domains] All alpha 4-helical cytokines
1cnt4-1 [seq. related domains] All alpha 4-helical cytokines
1au1b-1 [seq. related domains] All alpha 4-helical cytokines
1lki-1 [seq. related domains] All alpha 4-helical cytokines
2gmfb-1 [seq. related domains] All alpha 4-helical cytokines
1irl-1 [seq. related domains] All alpha 4-helical cytokines
1rhgc-1 [seq. related domains] All alpha 4-helical cytokines
1hwga-1 [seq. related domains] All alpha 4-helical cytokines
1hik-1 [seq. related domains] All alpha 4-helical cytokines
1hmcb-1 [seq. related domains] All alpha 4-helical cytokines
1hulb-2 [seq. related domains] All alpha 4-helical cytokines Short chain
1eged-1 [seq. related domains] All alpha Acyl-CoA dehydrogenase (flavoprotein), N-terminal domain
1aep-1 [seq. related domains] All alpha Apolipophorin-III
1ryt-1 [seq. related domains] All alpha Ferritin like
1bfrx-1 [seq. related domains] All alpha Ferritin like
2fha-1 [seq. related domains] All alpha Ferritin like
1vls-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1rmva-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1hmdb-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1jafb-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1hr3a-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1knyb-2 [seq. related domains] All alpha Four-helical up-and-down bundle
1nfo-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1eged-3 [seq. related domains] All alpha Four-helical up-and-down bundle
1hr3c-1 [seq. related domains] All alpha Four-helical up-and-down bundle
256ba-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1hr3b-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1fslb-1 [seq. related domains] All alpha Globin-like
1allb-1 [seq. related domains] All alpha Globin-like
1a0zd-1 [seq. related domains] All alpha Globin-like
2hbg-1 [seq. related domains] All alpha Globin-like
2hbib-1 [seq. related domains] All alpha Globin-like
1ash-1 [seq. related domains] All alpha Globin-like
1vhbb-1 [seq. related domains] All alpha Globin-like
1gukb-2 [seq. related domains] All alpha Glutathione S-transferases, C-terminal domain
1gnwb-2 [seq. related domains] All alpha Glutathione S-transferases, C-terminal domain
3tf4b-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1ar5b-1 [seq. related domains] All alpha Long alpha-hairpin
1sesa-1 [seq. related domains] All alpha Long alpha-hairpin
1mtyh-1 [seq. related domains] All alpha Methane monooxygenase hydrolase, gamma subunit
1bmtb-1 [seq. related domains] All alpha Methionine synthase domain
1enva-1 [seq. related domains] All alpha Oligomers of long helices
1vasa-1 [seq. related domains] All alpha T4 endonuclease V
1sgk-2 [seq. related domains] Membrane and cell surface proteins and peptides Toxins' membrane translocation domains
1colb-1 [seq. related domains] Membrane and cell surface proteins and peptides Toxins' membrane translocation domains
1as3-2 [seq. related domains] All alpha Transducin (alpha subunit), insertion domain
2rsla-1 [seq. related domains] Alpha and beta (a/b) gamma,delta Resolvase, large fragment
1wq1g-2 [seq. related domains] undefined undefined
1a17-1 [seq. related domains] undefined undefined
1mnmb-1 [seq. related domains] undefined undefined
2a0b-1 [seq. related domains] undefined undefined
1agrh-1 [seq. related domains] undefined undefined
1higb-2 [seq. related domains] undefined undefined
1efrg-1 [seq. related domains] undefined undefined
1aa0-1 [seq. related domains] undefined undefined
1occo-4 [seq. related domains] undefined undefined
1bgw-4 [seq. related domains] undefined undefined
2pax-1 [seq. related domains] undefined undefined
1jli-1 [seq. related domains] undefined undefined
1e2ac-1 [seq. related domains] undefined undefined
1ak4d-1 [seq. related domains] undefined undefined
1maz-1 [seq. related domains] undefined undefined
1nsgb-1 [seq. related domains] undefined undefined
2trt-1 [seq. related domains] undefined undefined
1a5t-2 [seq. related domains] undefined undefined
1lbeb-1 [seq. related domains] undefined undefined
1gtoc-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1brd-1 [seq. related domains] Membrane and cell surface proteins and peptides Membrane all-alpha
1a06-1 [seq. related domains] Alpha and beta (a+b) Protein kinases (PK), catalytic core C terminal Domain
2csn-2 [seq. related domains] Alpha and beta (a+b) Protein kinases (PK), catalytic core C terminal Domain
1ciy-1 [seq. related domains] Membrane and cell surface proteins and peptides Toxins' membrane translocation domains
1aa7b-1 [seq. related domains] undefined undefined
2fusb-2 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk