3 Dee - Database of Protein Domain Definitions

[Search] [HELP]

The current cluster is formed at a score of 3.791

Ascend tree (bring in more domains)

Classes% of representative set
Alpha and beta (a+b) 66.67
All alpha 33.33
Breakdown into folds% of cluster % of class
Alpha and beta (a+b)
Ribosome inactivating proteins (RIP) Domain II from 3Dee 66.67 1.04
All alpha
DNA-binding 3-helical bundle from 3Dee 33.33 0.49

It is formed by merging the following clusters

Cluster 0

All domains in cluster 0 sub-divide into single membered clusters

1ret-1 [seq. related domains] All alpha DNA-binding 3-helical bundle

Cluster 1

Descend tree into cluster 1

1ifu-2 [seq. related domains] Alpha and beta (a+b) Ribosome inactivating proteins (RIP) Domain II
1bryz-2 [seq. related domains] Alpha and beta (a+b) Ribosome inactivating proteins (RIP) Domain II

View superpositions of "checked" domains

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk