3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 1.927

Ascend tree (bring in more domains)

Classes% of representative set
undefined 40.00
Alpha and beta (a+b) 6.67
All alpha 53.33
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 40.00 0.94
Alpha and beta (a+b)
Thymidylate synthase Extra Domain from 3Dee 6.67 0.52
All alpha
EF-hand from 3Dee 33.33 2.46
P-loop containing nucleotide triphosphate hydrolases all helical domain from 3Dee 6.67 0.49
Tyrosyl-tRNA synthetase, middle domain from 3Dee 6.67 0.49
p53 tetramerization domain from SCOP 6.67 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1jsa-1 [seq. related domains] All alpha EF-hand
5icb-1 [seq. related domains] All alpha EF-hand
1djzb-1 [seq. related domains] All alpha EF-hand
1jsa-2 [seq. related domains] All alpha EF-hand
1ncz-1 [seq. related domains] All alpha EF-hand
1soo-2 [seq. related domains] All alpha P-loop containing nucleotide triphosphate hydrolases all helical domain
3ts1-2 [seq. related domains] All alpha Tyrosyl-tRNA synthetase, middle domain
1fts-1 [seq. related domains] undefined undefined
1delb-2 [seq. related domains] undefined undefined
2af8-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1tsz-2 [seq. related domains] Alpha and beta (a+b) Thymidylate synthase Extra Domain
1a1uc-1 [seq. related domains] All alpha p53 tetramerization domain
1ycra-1 [seq. related domains] undefined undefined
1yub-2 [seq. related domains] undefined undefined
1unkd-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

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