3 Dee - Database of Protein Domain Definitions

The current cluster is formed at a score of 1.019

Ascend tree (bring in more domains)

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• Classes

• All alpha folds
• Alpha and beta (a+b) folds
• undefined folds

• Cluster 1
• Cluster 2

Breakdown into folds	% of cluster	% of class
undefined
undefined from 3Dee	58.06	2.83
Alpha and beta (a+b)
Lysozyme-like Domain I from 3Dee	6.45	1.04
Thymidylate synthase Extra Domain from 3Dee	3.23	0.52
All alpha
EF-hand from 3Dee	16.13	2.46
Endonuclease III from 3Dee	3.23	0.49
Lysin from SCOP	3.23	0.49
P-loop containing nucleotide triphosphate hydrolases all helical domain from 3Dee	3.23	0.49
Tyrosyl-tRNA synthetase, middle domain from 3Dee	3.23	0.49
p53 tetramerization domain from SCOP	3.23	0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1djzb-1	[seq. related domains]	All alpha	EF-hand
1jsa-1	[seq. related domains]	All alpha	EF-hand
1jsa-2	[seq. related domains]	All alpha	EF-hand
1ncz-1	[seq. related domains]	All alpha	EF-hand
5icb-1	[seq. related domains]	All alpha	EF-hand
256l-1	[seq. related domains]	Alpha and beta (a+b)	Lysozyme-like Domain I
1soo-2	[seq. related domains]	All alpha	P-loop containing nucleotide triphosphate hydrolases all helical domain
1tsz-2	[seq. related domains]	Alpha and beta (a+b)	Thymidylate synthase Extra Domain
3ts1-2	[seq. related domains]	All alpha	Tyrosyl-tRNA synthetase, middle domain
1a1uc-1	[seq. related domains]	All alpha	p53 tetramerization domain
1klmb-3	[seq. related domains]	undefined	undefined
1ycra-1	[seq. related domains]	undefined	undefined
1yub-2	[seq. related domains]	undefined	undefined
1delb-2	[seq. related domains]	undefined	undefined
1aa2-1	[seq. related domains]	undefined	undefined
1aoa-1	[seq. related domains]	undefined	undefined
1ddf-1	[seq. related domains]	undefined	undefined
1fts-1	[seq. related domains]	undefined	undefined
1chkb-2	[seq. related domains]	undefined	undefined
2trcp-1	[seq. related domains]	undefined	undefined
1aoa-2	[seq. related domains]	undefined	undefined
1unkd-1	[seq. related domains]	undefined	undefined
1ngr-1	[seq. related domains]	undefined	undefined
1ahjh-1	[seq. related domains]	undefined	undefined
1chkb-1	[seq. related domains]	undefined	undefined
1pmi-2	[seq. related domains]	undefined	undefined
2af8-1	[seq. related domains]	undefined	undefined

Cluster 2

Descend tree into cluster 2

2abk-1	[seq. related domains]	All alpha	Endonuclease III
1lynb-1	[seq. related domains]	All alpha	Lysin
1lsg-1	[seq. related domains]	Alpha and beta (a+b)	Lysozyme-like Domain I
1sly-3	[seq. related domains]	undefined	undefined

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