3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 4.043

Ascend tree (bring in more domains)

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Classes% of representative set
undefined 12.12
Alpha and beta (a/b) 87.88
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 12.12 0.63
Alpha and beta (a/b)
beta/alpha (TIM)-barrel from 3Dee 87.88 10.58

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1xiab-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1aq0b-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1jul-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1cec-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1fdzd-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1eceb-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1dtn-2 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
2oneb-2 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
2xyl-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1bgmp-4 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1a0ed-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
2ebn-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1pyk-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1ag1t-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1a3wb-2 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
2hvm-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1pii-2 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1ctn-2 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1vjs-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1xiaa-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
2tsya-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1ad4b-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1cwn-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1adod-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1ak5-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1rcxv-2 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1dorb-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1al8-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1dik-4 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
2tmdb-1 [seq. related domains] Alpha and beta (a/b) beta/alpha (TIM)-barrel
1ucwb-1 [seq. related domains] undefined undefined
1pud-1 [seq. related domains] undefined undefined
1zen-1 [seq. related domains] undefined undefined

View superpositions of "checked" domains

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk