3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 1.183

Ascend tree (bring in more domains)

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Classes% of representative set
undefined 25.93
Alpha and beta (a/b) 70.37
Alpha and beta (a+b) 3.70
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 25.93 1.10
Alpha and beta (a/b)
Flavodoxin-like from SCOP 3.70 0.36
N-carbamoylsarcosine amidohydrolase from 3Dee 3.70 0.36
NAD(P)-binding Rossmann-fold domains from SCOP 11.11 1.09
P-loop containing nucleotide triphosphate hydrolases from SCOP 33.33 3.28
Thiamin-binding from 3Dee 18.52 1.82
Alpha and beta (a+b)
P-loop containing nucleotide triphosphate hydrolases, small a+b insert from 3Dee 3.70 0.52

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1ese-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1nbac-1 [seq. related domains] Alpha and beta (a/b) N-carbamoylsarcosine amidohydrolase
1zid-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1dira-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1fdw-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1ankb-1 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1guab-1 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1gp2a-2 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1fts-2 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1dai-1 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1n2ch-1 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1elo-1 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1tmkb-1 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1aipf-2 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1bif-1 [seq. related domains] undefined undefined
1udc-1 [seq. related domains] undefined undefined
1wab-1 [seq. related domains] undefined undefined
1ble-1 [seq. related domains] undefined undefined
1fsz-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

2recf-1 [seq. related domains] Alpha and beta (a+b) P-loop containing nucleotide triphosphate hydrolases, small a+b insert
1ypdb-1 [seq. related domains] Alpha and beta (a/b) Thiamin-binding
1powb-1 [seq. related domains] Alpha and beta (a/b) Thiamin-binding
1ypdb-3 [seq. related domains] Alpha and beta (a/b) Thiamin-binding
1powb-3 [seq. related domains] Alpha and beta (a/b) Thiamin-binding
1ay0b-2 [seq. related domains] Alpha and beta (a/b) Thiamin-binding
1a5t-1 [seq. related domains] undefined undefined
1skyb-2 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk