3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 3.060

Ascend tree (bring in more domains)

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Classes% of representative set
undefined 21.74
Alpha and beta (a/b) 78.26
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 21.74 1.57
Alpha and beta (a/b)
Aspartate carbamoyltransferase, Catalytic-chain from 3Dee 4.35 0.73
CheB methylesterase domain (C-terminal residues 152-349) from 3Dee 2.17 0.36
Flavodoxin-like from SCOP 21.74 3.65
Integrin A (or I) domain from SCOP 2.17 0.36
NAD(P)-binding Rossmann-fold domains from SCOP 19.57 3.28
Periplasmic binding protein-like I Domain I from 3Dee 13.04 2.19
Periplasmic binding protein-like I Domain II from 3Dee 10.87 1.82
Phosphofructokinase Domain I from 3Dee 2.17 0.36
Phosphotyrosine protein phosphatases I from 3Dee 2.17 0.36

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1akmc-1 [seq. related domains] Alpha and beta (a/b) Aspartate carbamoyltransferase, Catalytic-chain
1a2ob-1 [seq. related domains] Alpha and beta (a/b) CheB methylesterase domain (C-terminal residues 152-349)
1scue-3 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1ag9b-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1reqc-3 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
2reqd-3 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1fsp-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
2nadb-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1scud-2 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1dxy-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1psdb-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1oxmb-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1atzb-1 [seq. related domains] Alpha and beta (a/b) Integrin A (or I) domain
1lbgd-6 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
1dbqb-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
1pea-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
1ba2b-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
2liv-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
1bap-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
1ba2b-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
2liv-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1bap-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1dbqb-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1pea-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
2pfkd-1 [seq. related domains] Alpha and beta (a/b) Phosphofructokinase Domain I
1pnt-1 [seq. related domains] Alpha and beta (a/b) Phosphotyrosine protein phosphatases I
1auxb-1 [seq. related domains] undefined undefined
2frvl-1 [seq. related domains] undefined undefined
1lci-2 [seq. related domains] undefined undefined
1fmtb-1 [seq. related domains] undefined undefined
1rvvz-1 [seq. related domains] undefined undefined
1fuif-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1akmc-2 [seq. related domains] Alpha and beta (a/b) Aspartate carbamoyltransferase, Catalytic-chain
1a7kd-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
2dpg-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
2pgd-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1dxy-2 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1ldg-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1bdmb-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1drw-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1scud-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1dapb-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1lehb-3 [seq. related domains] undefined undefined
1aup-3 [seq. related domains] undefined undefined
1yvel-1 [seq. related domains] undefined undefined
1ofgf-1 [seq. related domains] undefined undefined

View superpositions of "checked" domains

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3dee@compbio.dundee.ac.uk