3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 1.251

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Classes% of representative set
undefined 31.37
Alpha and beta (a/b) 68.63
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 31.37 5.03
Alpha and beta (a/b)
Aspartate carbamoyltransferase, Catalytic-chain from 3Dee 1.96 0.73
Biotin carboxylase N-terminal domain-like from SCOP 2.94 1.09
CheB methylesterase domain (C-terminal residues 152-349) from 3Dee 0.98 0.36
FAD (also NAD)-binding motif from 3Dee 4.90 1.82
Ferredoxin reductase-like, C-terminal NADP-linked domain from SCOP 3.92 1.46
Flavodoxin-like from SCOP 11.76 4.38
Glutaminase/Asparaginase Domain I from 3Dee 0.98 0.36
Glutaminase/Asparaginase Domain II from 3Dee 0.98 0.36
Glycinamide ribonucleotide transformylase Domain I from 3Dee 0.98 0.36
Integrin A (or I) domain from SCOP 0.98 0.36
NAD(P)-binding Rossmann-fold domains from SCOP 9.80 3.65
Nitrogenase iron-molybdenum protein, alpha and beta chains domain III from 3Dee 1.96 0.73
Nitrogenase iron-molybdenum protein, beta and alpha chains domain II from 3Dee 0.98 0.36
Nitrogenase iron-molybdenum protein, beta chain domain I from 3Dee 0.98 0.36
P-loop containing nucleotide triphosphate hydrolases from SCOP 0.98 0.36
Periplasmic binding protein-like I Domain I from 3Dee 5.88 2.19
Periplasmic binding protein-like I Domain II from 3Dee 4.90 1.82
Phosphofructokinase Domain I from 3Dee 0.98 0.36
Phosphofructokinase Domain II from 3Dee 0.98 0.36
Phosphoglucomutase, first 3 domains from SCOP 0.98 0.36
Phosphotyrosine protein phosphatases I from 3Dee 0.98 0.36
Pyruvate kinase, C-terminal domain from SCOP 1.96 0.73
Pyruvate oxidase and decarboxylase, middle domain from 3Dee 1.96 0.73
Transketolase, C-terminal domain from 3Dee 0.98 0.36
Type I DNA topoisomerase Rossmann-fold like domain from 3Dee 0.98 0.36
Uracil-DNA glycosylase from 3Dee 0.98 0.36
beta-Glucosyltransferase & glycogen phosphorylase Domain I from 3Dee 0.98 0.36
beta-Glucosyltransferase & glycogen phosphorylase Domain II from 3Dee 0.98 0.36

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1akmc-1 [seq. related domains] Alpha and beta (a/b) Aspartate carbamoyltransferase, Catalytic-chain
1akmc-2 [seq. related domains] Alpha and beta (a/b) Aspartate carbamoyltransferase, Catalytic-chain
1bncb-1 [seq. related domains] Alpha and beta (a/b) Biotin carboxylase N-terminal domain-like
1gsh-1 [seq. related domains] Alpha and beta (a/b) Biotin carboxylase N-terminal domain-like
1iow-1 [seq. related domains] Alpha and beta (a/b) Biotin carboxylase N-terminal domain-like
1a2ob-1 [seq. related domains] Alpha and beta (a/b) CheB methylesterase domain (C-terminal residues 152-349)
2tmdb-3 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
1fcdb-2 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
1joa-2 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
3grt-2 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
1vdc-2 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
1quf-2 [seq. related domains] Alpha and beta (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain
1fdr-2 [seq. related domains] Alpha and beta (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain
1ndh-2 [seq. related domains] Alpha and beta (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain
2pia-2 [seq. related domains] Alpha and beta (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain
1ag9b-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
4cat-2 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1psdb-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1scue-3 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1scud-2 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1fsp-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1oxmb-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1ordb-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1reqc-3 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
2reqd-3 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
2nadb-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1dxy-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
4ecad-1 [seq. related domains] Alpha and beta (a/b) Glutaminase/Asparaginase Domain I
4ecad-2 [seq. related domains] Alpha and beta (a/b) Glutaminase/Asparaginase Domain II
1garb-1 [seq. related domains] Alpha and beta (a/b) Glycinamide ribonucleotide transformylase Domain I
1atzb-1 [seq. related domains] Alpha and beta (a/b) Integrin A (or I) domain
1a7kd-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1scud-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
2dpg-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1ldg-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1drw-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1dapb-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1bdmb-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1dxy-2 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
2pgd-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1ykfd-2 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1miod-3 [seq. related domains] Alpha and beta (a/b) Nitrogenase iron-molybdenum protein, alpha and beta chains domain III
1mioc-3 [seq. related domains] Alpha and beta (a/b) Nitrogenase iron-molybdenum protein, alpha and beta chains domain III
1miod-2 [seq. related domains] Alpha and beta (a/b) Nitrogenase iron-molybdenum protein, beta and alpha chains domain II
1miod-1 [seq. related domains] Alpha and beta (a/b) Nitrogenase iron-molybdenum protein, beta chain domain I
1gky-1 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1pea-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
2liv-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
1ba2b-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
1dbqb-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
1bap-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
1lbgd-6 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
2liv-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1ba2b-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1bap-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1pea-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1dbqb-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
2pfkd-1 [seq. related domains] Alpha and beta (a/b) Phosphofructokinase Domain I
2pfkd-2 [seq. related domains] Alpha and beta (a/b) Phosphofructokinase Domain II
1lxtb-1 [seq. related domains] Alpha and beta (a/b) Phosphoglucomutase, first 3 domains
1pnt-1 [seq. related domains] Alpha and beta (a/b) Phosphotyrosine protein phosphatases I
1a3wb-1 [seq. related domains] Alpha and beta (a/b) Pyruvate kinase, C-terminal domain
1pyk-3 [seq. related domains] Alpha and beta (a/b) Pyruvate kinase, C-terminal domain
1powb-2 [seq. related domains] Alpha and beta (a/b) Pyruvate oxidase and decarboxylase, middle domain
1ypdb-2 [seq. related domains] Alpha and beta (a/b) Pyruvate oxidase and decarboxylase, middle domain
1ecl-1 [seq. related domains] Alpha and beta (a/b) Type I DNA topoisomerase Rossmann-fold like domain
2bgu-1 [seq. related domains] Alpha and beta (a/b) beta-Glucosyltransferase & glycogen phosphorylase Domain I
2bgu-2 [seq. related domains] Alpha and beta (a/b) beta-Glucosyltransferase & glycogen phosphorylase Domain II
1jud-1 [seq. related domains] undefined undefined
1fuif-1 [seq. related domains] undefined undefined
1ad2-2 [seq. related domains] undefined undefined
4dmr-2 [seq. related domains] undefined undefined
1aup-3 [seq. related domains] undefined undefined
1yvel-1 [seq. related domains] undefined undefined
1atib-2 [seq. related domains] undefined undefined
1jdbk-4 [seq. related domains] undefined undefined
1a98b-1 [seq. related domains] undefined undefined
1lci-1 [seq. related domains] undefined undefined
1buz-1 [seq. related domains] undefined undefined
1kmnd-2 [seq. related domains] undefined undefined
1lehb-3 [seq. related domains] undefined undefined
1vhrb-2 [seq. related domains] undefined undefined
1e2b-1 [seq. related domains] undefined undefined
1lci-2 [seq. related domains] undefined undefined
1delb-1 [seq. related domains] undefined undefined
1uag-3 [seq. related domains] undefined undefined
1jdbk-6 [seq. related domains] undefined undefined
1fmtb-1 [seq. related domains] undefined undefined
1rvvz-1 [seq. related domains] undefined undefined
2frvl-1 [seq. related domains] undefined undefined
1ofgf-1 [seq. related domains] undefined undefined
1lbeb-2 [seq. related domains] undefined undefined
1pdo-1 [seq. related domains] undefined undefined
1efvb-3 [seq. related domains] undefined undefined
1ak1-2 [seq. related domains] undefined undefined
1ak1-1 [seq. related domains] undefined undefined
1auxb-1 [seq. related domains] undefined undefined
1uag-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1ay0b-3 [seq. related domains] Alpha and beta (a/b) Transketolase, C-terminal domain
1akz-1 [seq. related domains] Alpha and beta (a/b) Uracil-DNA glycosylase
1bgw-1 [seq. related domains] undefined undefined
1muga-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk