3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 3.221

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Classes% of representative set
undefined 16.13
Small proteins 77.42
Peptides 6.45
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 16.13 0.79
Small proteins
Classic zinc finger from 3Dee 70.97 19.13
Insulin-like from SCOP 6.45 1.74
Peptides
Coagulation factor VIII, membrane-binding peptide from 3Dee 3.23 2.04
Gelsolin fragment (residues 150-169) from 3Dee 3.23 2.04

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1fac-1 [seq. related domains] Peptides Coagulation factor VIII, membrane-binding peptide
1sol-1 [seq. related domains] Peptides Gelsolin fragment (residues 150-169)
6rlxd-1 [seq. related domains] Small proteins Insulin-like
1bonb-1 [seq. related domains] Small proteins Insulin-like
1hcw-1 [seq. related domains] undefined undefined
1alg-1 [seq. related domains] undefined undefined
1aie-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

7znf-1 [seq. related domains] Small proteins Classic zinc finger
1znf-1 [seq. related domains] Small proteins Classic zinc finger
1a1ja-3 [seq. related domains] Small proteins Classic zinc finger
1ubdc-1 [seq. related domains] Small proteins Classic zinc finger
1tf6d-1 [seq. related domains] Small proteins Classic zinc finger
1ubdc-3 [seq. related domains] Small proteins Classic zinc finger
1sp1-1 [seq. related domains] Small proteins Classic zinc finger
1a1ja-1 [seq. related domains] Small proteins Classic zinc finger
1arf-1 [seq. related domains] Small proteins Classic zinc finger
2adr-2 [seq. related domains] Small proteins Classic zinc finger
1tf6d-4 [seq. related domains] Small proteins Classic zinc finger
1tf6d-5 [seq. related domains] Small proteins Classic zinc finger
1bbo-1 [seq. related domains] Small proteins Classic zinc finger
1tf6d-6 [seq. related domains] Small proteins Classic zinc finger
1znm-1 [seq. related domains] Small proteins Classic zinc finger
1tf3a-1 [seq. related domains] Small proteins Classic zinc finger
1tf3a-2 [seq. related domains] Small proteins Classic zinc finger
1ubdc-2 [seq. related domains] Small proteins Classic zinc finger
1tf3a-3 [seq. related domains] Small proteins Classic zinc finger
2adr-1 [seq. related domains] Small proteins Classic zinc finger
1ubdc-4 [seq. related domains] Small proteins Classic zinc finger
1sp2-1 [seq. related domains] Small proteins Classic zinc finger
1fsv-1 [seq. related domains] undefined undefined
1rmd-2 [seq. related domains] undefined undefined

View superpositions of "checked" domains

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3dee@compbio.dundee.ac.uk