3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 2.368

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Classes% of representative set
undefined 19.44
Small proteins 72.22
Peptides 8.33
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 19.44 1.10
Small proteins
Classic zinc finger from 3Dee 61.11 19.13
Insulin-like from SCOP 11.11 3.48
Peptides
Coagulation factor VIII, membrane-binding peptide from 3Dee 2.78 2.04
Gelsolin fragment (residues 150-169) from 3Dee 2.78 2.04
Parathyroid hormone fragment (residues 1-37) from 3Dee 2.78 2.04

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

7znf-1 [seq. related domains] Small proteins Classic zinc finger
1znf-1 [seq. related domains] Small proteins Classic zinc finger
1a1ja-3 [seq. related domains] Small proteins Classic zinc finger
1ubdc-1 [seq. related domains] Small proteins Classic zinc finger
1tf6d-1 [seq. related domains] Small proteins Classic zinc finger
1ubdc-3 [seq. related domains] Small proteins Classic zinc finger
1sp1-1 [seq. related domains] Small proteins Classic zinc finger
1tf3a-3 [seq. related domains] Small proteins Classic zinc finger
2adr-1 [seq. related domains] Small proteins Classic zinc finger
1ubdc-4 [seq. related domains] Small proteins Classic zinc finger
1sp2-1 [seq. related domains] Small proteins Classic zinc finger
1a1ja-1 [seq. related domains] Small proteins Classic zinc finger
1arf-1 [seq. related domains] Small proteins Classic zinc finger
2adr-2 [seq. related domains] Small proteins Classic zinc finger
1tf6d-4 [seq. related domains] Small proteins Classic zinc finger
1bbo-1 [seq. related domains] Small proteins Classic zinc finger
1tf6d-5 [seq. related domains] Small proteins Classic zinc finger
1tf6d-6 [seq. related domains] Small proteins Classic zinc finger
1znm-1 [seq. related domains] Small proteins Classic zinc finger
1tf3a-1 [seq. related domains] Small proteins Classic zinc finger
1tf3a-2 [seq. related domains] Small proteins Classic zinc finger
1ubdc-2 [seq. related domains] Small proteins Classic zinc finger
1fac-1 [seq. related domains] Peptides Coagulation factor VIII, membrane-binding peptide
1sol-1 [seq. related domains] Peptides Gelsolin fragment (residues 150-169)
6rlxd-1 [seq. related domains] Small proteins Insulin-like
1bonb-1 [seq. related domains] Small proteins Insulin-like
1zwg-1 [seq. related domains] Peptides Parathyroid hormone fragment (residues 1-37)
1aie-1 [seq. related domains] undefined undefined
1fsv-1 [seq. related domains] undefined undefined
3leu-1 [seq. related domains] undefined undefined
1alg-1 [seq. related domains] undefined undefined
1rmd-2 [seq. related domains] undefined undefined
1hcw-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1bona-1 [seq. related domains] Small proteins Insulin-like
6rlxc-1 [seq. related domains] Small proteins Insulin-like
1melb-2 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk