3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 1.861

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Classes% of representative set
undefined 20.51
Small proteins 66.67
Peptides 12.82
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 20.51 1.26
Small proteins
Classic zinc finger from 3Dee 56.41 19.13
Insulin-like from SCOP 10.26 3.48
Peptides
Coagulation factor VIII, membrane-binding peptide from 3Dee 2.56 2.04
Gelsolin fragment (residues 150-169) from 3Dee 2.56 2.04
Parathyroid hormone fragment (residues 1-37) from 3Dee 2.56 2.04
Protein kinases (PK) Inhibitor from 3Dee 5.13 4.08

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

7znf-1 [seq. related domains] Small proteins Classic zinc finger
1znf-1 [seq. related domains] Small proteins Classic zinc finger
1a1ja-3 [seq. related domains] Small proteins Classic zinc finger
1ubdc-1 [seq. related domains] Small proteins Classic zinc finger
1tf6d-1 [seq. related domains] Small proteins Classic zinc finger
1ubdc-3 [seq. related domains] Small proteins Classic zinc finger
1sp1-1 [seq. related domains] Small proteins Classic zinc finger
1ubdc-2 [seq. related domains] Small proteins Classic zinc finger
1tf3a-3 [seq. related domains] Small proteins Classic zinc finger
2adr-1 [seq. related domains] Small proteins Classic zinc finger
1ubdc-4 [seq. related domains] Small proteins Classic zinc finger
1sp2-1 [seq. related domains] Small proteins Classic zinc finger
1arf-1 [seq. related domains] Small proteins Classic zinc finger
2adr-2 [seq. related domains] Small proteins Classic zinc finger
1tf6d-4 [seq. related domains] Small proteins Classic zinc finger
1a1ja-1 [seq. related domains] Small proteins Classic zinc finger
1tf6d-5 [seq. related domains] Small proteins Classic zinc finger
1bbo-1 [seq. related domains] Small proteins Classic zinc finger
1tf6d-6 [seq. related domains] Small proteins Classic zinc finger
1znm-1 [seq. related domains] Small proteins Classic zinc finger
1tf3a-1 [seq. related domains] Small proteins Classic zinc finger
1tf3a-2 [seq. related domains] Small proteins Classic zinc finger
1fac-1 [seq. related domains] Peptides Coagulation factor VIII, membrane-binding peptide
1sol-1 [seq. related domains] Peptides Gelsolin fragment (residues 150-169)
1bonb-1 [seq. related domains] Small proteins Insulin-like
6rlxd-1 [seq. related domains] Small proteins Insulin-like
6rlxc-1 [seq. related domains] Small proteins Insulin-like
1bona-1 [seq. related domains] Small proteins Insulin-like
1zwg-1 [seq. related domains] Peptides Parathyroid hormone fragment (residues 1-37)
1hcw-1 [seq. related domains] undefined undefined
1fsv-1 [seq. related domains] undefined undefined
3leu-1 [seq. related domains] undefined undefined
1aie-1 [seq. related domains] undefined undefined
1alg-1 [seq. related domains] undefined undefined
1rmd-2 [seq. related domains] undefined undefined
1melb-2 [seq. related domains] undefined undefined
1p1p-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1cdkj-1 [seq. related domains] Peptides Protein kinases (PK) Inhibitor
1fmoi-1 [seq. related domains] Peptides Protein kinases (PK) Inhibitor

Enter PDB code - optionally suffixing the code with the chain id.


3dee@compbio.dundee.ac.uk