3 Dee - Database of Protein Domain Definitions

The current cluster is formed at a score of 0.351

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• Classes

• All alpha folds
• All beta folds
• Alpha and beta (a+b) folds
• Small proteins folds
• undefined folds

• Cluster 1
• Cluster 2

Breakdown into folds	% of cluster	% of class
undefined
undefined from 3Dee	22.58	3.30
Small proteins
Ascaris trypsin inhibitor from 3Dee	1.08	0.87
BPTI-like from SCOP	3.23	2.61
Blood coagulation inhibitor (disintegrin) from SCOP	1.08	0.87
Complement control module from 3Dee	1.08	0.87
Defensin-like from SCOP	4.30	3.48
EGF-like module from 3Dee	4.30	3.48
Fibronectin type I module from SCOP	2.15	1.74
Fibronectin type II module from 3Dee	1.08	0.87
Glucocorticoid receptor-like (DNA-binding domain) from SCOP	2.15	1.74
Ligand-binding domain of low-density lipoprotein receptor from SCOP	1.08	0.87
Neurotoxin III (ATX III) from SCOP	1.08	0.87
Ovomucoid/PCI-1 like inhibitors from SCOP	1.08	0.87
Protein kinase cystein-rich domain (cys2) from 3Dee	1.08	0.87
Proteinase inhibitor PMP-C from SCOP	1.08	0.87
Rubredoxin-like from SCOP	2.15	1.74
Small inhibitors, toxins, lectins from 3Dee	23.66	19.13
Thrombin inhibitors from 3Dee	2.15	1.74
Trefoil from SCOP	1.08	0.87
Zn2/Cys6 DNA-binding domain from SCOP	2.15	1.74
Alpha and beta (a+b)
A DNA topoisomerase I domain from 3Dee	1.08	0.52
C-type lectin from 3Dee	3.23	1.55
Lysozyme-like Domain II from 3Dee	2.15	1.04
All beta
P-loop containing nucleotide triphosphate hydrolases small insert from 3Dee	2.15	0.89
Viral coat and capsid proteins from SCOP	3.23	1.34
All alpha
Heme-linked catalases N-terminal fragment from 3Dee	1.08	0.49
Hemocyanin, middle domain I from 3Dee	4.30	1.97
Prokaryotic histone-like protein from 3Dee	1.08	0.49
Pyruvate oxidase and decarboxylase, C terminal domain from 3Dee	1.08	0.49
small domain attached to TIM barrel from 3Dee	1.08	0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1yua-1	[seq. related domains]	Alpha and beta (a+b)	A DNA topoisomerase I domain
1atb-1	[seq. related domains]	Small proteins	Ascaris trypsin inhibitor
2ech-1	[seq. related domains]	Small proteins	Blood coagulation inhibitor (disintegrin)
1vve-1	[seq. related domains]	Small proteins	Complement control module
2bds-1	[seq. related domains]	Small proteins	Defensin-like
1dfnb-1	[seq. related domains]	Small proteins	Defensin-like
1apf-1	[seq. related domains]	Small proteins	Defensin-like
1bnb-1	[seq. related domains]	Small proteins	Defensin-like
1faxl-1	[seq. related domains]	Small proteins	EGF-like module
1xdtr-1	[seq. related domains]	Small proteins	EGF-like module
1tpg-2	[seq. related domains]	Small proteins	EGF-like module
1zaq-1	[seq. related domains]	Small proteins	EGF-like module
1tpn-1	[seq. related domains]	Small proteins	Fibronectin type I module
1fbr-2	[seq. related domains]	Small proteins	Fibronectin type I module
5gata-1	[seq. related domains]	Small proteins	Glucocorticoid receptor-like (DNA-binding domain)
1iml-1	[seq. related domains]	Small proteins	Glucocorticoid receptor-like (DNA-binding domain)
8cata-1	[seq. related domains]	All alpha	Heme-linked catalases N-terminal fragment
1hc2-2	[seq. related domains]	All alpha	Hemocyanin, middle domain I
1nol-2	[seq. related domains]	All alpha	Hemocyanin, middle domain I
1ll1-2	[seq. related domains]	All alpha	Hemocyanin, middle domain I
1oxy-2	[seq. related domains]	All alpha	Hemocyanin, middle domain I
1ajj-1	[seq. related domains]	Small proteins	Ligand-binding domain of low-density lipoprotein receptor
256l-2	[seq. related domains]	Alpha and beta (a+b)	Lysozyme-like Domain II
1lsg-2	[seq. related domains]	Alpha and beta (a+b)	Lysozyme-like Domain II
1ans-1	[seq. related domains]	Small proteins	Neurotoxin III (ATX III)
1tih-1	[seq. related domains]	Small proteins	Ovomucoid/PCI-1 like inhibitors
1zip-2	[seq. related domains]	All beta	P-loop containing nucleotide triphosphate hydrolases small insert
1ankb-2	[seq. related domains]	All beta	P-loop containing nucleotide triphosphate hydrolases small insert
1hns-1	[seq. related domains]	All alpha	Prokaryotic histone-like protein
1tbo-1	[seq. related domains]	Small proteins	Protein kinase cystein-rich domain (cys2)
1pmc-1	[seq. related domains]	Small proteins	Proteinase inhibitor PMP-C
1powb-4	[seq. related domains]	All alpha	Pyruvate oxidase and decarboxylase, C terminal domain
1iro-1	[seq. related domains]	Small proteins	Rubredoxin-like
1qyp-1	[seq. related domains]	Small proteins	Rubredoxin-like
1gur-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1tabi-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
2pta-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1bah-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1agg-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1acw-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1mvj-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1azk-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1bi6h-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1scy-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1ica-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1wgtb-3	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1omg-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
2cco-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
4cpai-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1ayj-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1omn-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1chl-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1lqq-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1mcti-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1myn-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1mmc-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1dec-1	[seq. related domains]	Small proteins	Thrombin inhibitors
1hic-1	[seq. related domains]	Small proteins	Thrombin inhibitors
2pspb-2	[seq. related domains]	Small proteins	Trefoil
1dhx-5	[seq. related domains]	All beta	Viral coat and capsid proteins
1dhx-1	[seq. related domains]	All beta	Viral coat and capsid proteins
2mev2-1	[seq. related domains]	All beta	Viral coat and capsid proteins
1ajyb-3	[seq. related domains]	Small proteins	Zn2/Cys6 DNA-binding domain
1pyib-3	[seq. related domains]	Small proteins	Zn2/Cys6 DNA-binding domain
1edg-2	[seq. related domains]	All alpha	small domain attached to TIM barrel
1ae9b-2	[seq. related domains]	undefined	undefined
1fre-1	[seq. related domains]	undefined	undefined
1ag7-1	[seq. related domains]	undefined	undefined
2brz-1	[seq. related domains]	undefined	undefined
2adx-1	[seq. related domains]	undefined	undefined
1qdp-1	[seq. related domains]	undefined	undefined
1apq-1	[seq. related domains]	undefined	undefined
1ryt-2	[seq. related domains]	undefined	undefined
2vgh-1	[seq. related domains]	undefined	undefined
1ztn-1	[seq. related domains]	undefined	undefined
1dorb-2	[seq. related domains]	undefined	undefined
1pft-1	[seq. related domains]	undefined	undefined
1axh-1	[seq. related domains]	undefined	undefined
1apj-1	[seq. related domains]	undefined	undefined
1dar-3	[seq. related domains]	undefined	undefined
2bbg-1	[seq. related domains]	undefined	undefined
1aqs-1	[seq. related domains]	undefined	undefined

Cluster 2

Descend tree into cluster 2

1tocu-2	[seq. related domains]	Small proteins	BPTI-like
1tcp-1	[seq. related domains]	Small proteins	BPTI-like
1ca0i-1	[seq. related domains]	Small proteins	BPTI-like
1bcpi-1	[seq. related domains]	Alpha and beta (a+b)	C-type lectin
1preb-1	[seq. related domains]	Alpha and beta (a+b)	C-type lectin
1ixxf-2	[seq. related domains]	Alpha and beta (a+b)	C-type lectin
1pdc-1	[seq. related domains]	Small proteins	Fibronectin type II module
1tsg-1	[seq. related domains]	undefined	undefined
1aiw-1	[seq. related domains]	undefined	undefined
1div-1	[seq. related domains]	undefined	undefined
1dxgb-1	[seq. related domains]	undefined	undefined

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