3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 0.717

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Classes% of representative set
undefined 14.29
Alpha and beta (a+b) 78.57
All beta 3.57
All alpha 3.57
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 14.29 0.63
Alpha and beta (a+b)
A DNA topoisomerase I domain from 3Dee 7.14 1.04
Cystatin-like from SCOP 35.71 5.18
Microbal ribonucleases from 3Dee 10.71 1.55
Profilin-like from SCOP 3.57 0.52
RNA bacteriophage capsid protein from SCOP 7.14 1.04
beta-Lactamase/D-ala carboxypeptidase Domain I from 3Dee 3.57 0.52
dsRBD & PDA domains from SCOP 10.71 1.55
All beta
Streptavidin-like from SCOP 3.57 0.45
All alpha
Lipoxigenase-1, A DNA topoisomerase I domain from 3Dee 3.57 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1vcc-1 [seq. related domains] Alpha and beta (a+b) A DNA topoisomerase I domain
1yua-2 [seq. related domains] Alpha and beta (a+b) A DNA topoisomerase I domain
1dvd-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1spub-2 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1askb-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1a90-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1ksib-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1iskb-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1spub-3 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1std-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1udii-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
4mond-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1yge-3 [seq. related domains] All alpha Lipoxigenase-1, A DNA topoisomerase I domain
1a2pc-1 [seq. related domains] Alpha and beta (a+b) Microbal ribonucleases
1rghb-1 [seq. related domains] Alpha and beta (a+b) Microbal ribonucleases
5birb-1 [seq. related domains] Alpha and beta (a+b) Microbal ribonucleases
1mvbc-1 [seq. related domains] Alpha and beta (a+b) RNA bacteriophage capsid protein
1qbec-1 [seq. related domains] Alpha and beta (a+b) RNA bacteriophage capsid protein
1swgd-1 [seq. related domains] All beta Streptavidin-like
1stu-1 [seq. related domains] Alpha and beta (a+b) dsRBD & PDA domains
1ah5-3 [seq. related domains] Alpha and beta (a+b) dsRBD & PDA domains
1pkp-1 [seq. related domains] Alpha and beta (a+b) dsRBD & PDA domains
1sfe-1 [seq. related domains] undefined undefined
1aqzb-1 [seq. related domains] undefined undefined
1ospo-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1hlup-1 [seq. related domains] Alpha and beta (a+b) Profilin-like
1tem-1 [seq. related domains] Alpha and beta (a+b) beta-Lactamase/D-ala carboxypeptidase Domain I
1a6jb-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk