3 Dee - Database of Protein Domain Definitions

The current cluster is formed at a score of 4.117

Ascend tree (bring in more domains)

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• Classes

• Alpha and beta (a+b) folds
• undefined folds

• Cluster 1
• Cluster 2
• Cluster 3

Breakdown into folds	% of cluster	% of class
undefined
undefined from 3Dee	21.05	0.63
Alpha and beta (a+b)
DCoH-like from SCOP	10.53	1.04
Ferredoxin-like from SCOP	63.16	6.22
TBP-like from SCOP	5.26	0.52

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1pyta-1	[seq. related domains]	Alpha and beta (a+b)	Ferredoxin-like
1psdb-3	[seq. related domains]	Alpha and beta (a+b)	Ferredoxin-like
2acy-1	[seq. related domains]	Alpha and beta (a+b)	Ferredoxin-like
1eayd-1	[seq. related domains]	Alpha and beta (a+b)	Ferredoxin-like
1mla-2	[seq. related domains]	Alpha and beta (a+b)	Ferredoxin-like
1spbp-1	[seq. related domains]	Alpha and beta (a+b)	Ferredoxin-like
1dhmb-1	[seq. related domains]	Alpha and beta (a+b)	Ferredoxin-like
1ris-1	[seq. related domains]	Alpha and beta (a+b)	Ferredoxin-like
1auda-1	[seq. related domains]	Alpha and beta (a+b)	Ferredoxin-like
1mli-1	[seq. related domains]	Alpha and beta (a+b)	Ferredoxin-like
1elo-5	[seq. related domains]	Alpha and beta (a+b)	Ferredoxin-like
2pii-1	[seq. related domains]	Alpha and beta (a+b)	Ferredoxin-like
2aw0-1	[seq. related domains]	undefined	undefined
2u1a-1	[seq. related domains]	undefined	undefined
1cg2d-2	[seq. related domains]	undefined	undefined

Cluster 2

Descend tree into cluster 2

1dcph-1	[seq. related domains]	Alpha and beta (a+b)	DCoH-like
1xxcf-1	[seq. related domains]	Alpha and beta (a+b)	DCoH-like

Cluster 3

Descend tree into cluster 3

1aisa-2	[seq. related domains]	Alpha and beta (a+b)	TBP-like
1hmva-2	[seq. related domains]	undefined	undefined

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View superpositions of "checked" domains

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