3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 1.616

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Classes% of representative set
undefined 28.57
Alpha and beta (a+b) 71.43
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 28.57 1.57
Alpha and beta (a+b)
DCoH-like from SCOP 5.71 1.04
Ferredoxin-like from SCOP 54.29 9.84
Histidine-containing phosphocarrier proteins (HPr) from SCOP 2.86 0.52
KH-domain from SCOP 2.86 0.52
Ribosomal protein L7/12, C-terminal fragment from SCOP 2.86 0.52
TBP-like from SCOP 2.86 0.52

It is formed by merging the following clusters

Cluster 0

All domains in cluster 0 sub-divide into single membered clusters

1regy-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like

Cluster 1

Descend tree into cluster 1

1xxcf-1 [seq. related domains] Alpha and beta (a+b) DCoH-like
1dcph-1 [seq. related domains] Alpha and beta (a+b) DCoH-like
1fxrb-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1up1-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1acmd-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1psdb-3 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1elo-5 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1vjw-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
2acy-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1rcxv-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1eayd-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1mla-2 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
2pii-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1spbp-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1pyta-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
2fxb-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1dhmb-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1ris-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1auda-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1mli-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1jem-1 [seq. related domains] Alpha and beta (a+b) Histidine-containing phosphocarrier proteins (HPr)
1vih-1 [seq. related domains] Alpha and beta (a+b) KH-domain
1ctf-1 [seq. related domains] Alpha and beta (a+b) Ribosomal protein L7/12, C-terminal fragment
1aisa-2 [seq. related domains] Alpha and beta (a+b) TBP-like
2aw0-1 [seq. related domains] undefined undefined
2ppsc-1 [seq. related domains] undefined undefined
1fohd-2 [seq. related domains] undefined undefined
1hmva-2 [seq. related domains] undefined undefined
2u1a-1 [seq. related domains] undefined undefined
1xer-1 [seq. related domains] undefined undefined
5aop-1 [seq. related domains] undefined undefined
5aop-3 [seq. related domains] undefined undefined
1cg2d-2 [seq. related domains] undefined undefined
2fmr-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.


3dee@compbio.dundee.ac.uk