3 Dee - Database of Protein Domain Definitions

[Search] [HELP]

The current cluster is formed at a score of 1.464

Ascend tree (bring in more domains)

Go to (document sections)

Classes% of representative set
undefined 36.96
Alpha and beta (a+b) 60.87
All alpha 2.17
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 36.96 2.67
Alpha and beta (a+b)
DCoH-like from SCOP 4.35 1.04
Ferredoxin-like from SCOP 41.30 9.84
Histidine-containing phosphocarrier proteins (HPr) from SCOP 2.17 0.52
KH-domain from SCOP 2.17 0.52
Protein kinases (PK), catalytic core N terminal Domain from 3Dee 6.52 1.55
Ribosomal protein L7/12, C-terminal fragment from SCOP 2.17 0.52
TBP-like from SCOP 2.17 0.52
All alpha
Acyl carrier protein from 3Dee 2.17 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1acp-1 [seq. related domains] All alpha Acyl carrier protein
1dcph-1 [seq. related domains] Alpha and beta (a+b) DCoH-like
1xxcf-1 [seq. related domains] Alpha and beta (a+b) DCoH-like
1fxrb-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1up1-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1acmd-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1psdb-3 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1elo-5 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1vjw-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
2acy-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1rcxv-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1eayd-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1mla-2 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
2pii-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1spbp-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1pyta-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
2fxb-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1regy-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1dhmb-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1ris-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1auda-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1mli-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1jem-1 [seq. related domains] Alpha and beta (a+b) Histidine-containing phosphocarrier proteins (HPr)
1vih-1 [seq. related domains] Alpha and beta (a+b) KH-domain
1ctf-1 [seq. related domains] Alpha and beta (a+b) Ribosomal protein L7/12, C-terminal fragment
1aisa-2 [seq. related domains] Alpha and beta (a+b) TBP-like
2aw0-1 [seq. related domains] undefined undefined
2ppsc-1 [seq. related domains] undefined undefined
1fohd-2 [seq. related domains] undefined undefined
5aop-1 [seq. related domains] undefined undefined
1hmva-2 [seq. related domains] undefined undefined
2u1a-1 [seq. related domains] undefined undefined
1xer-1 [seq. related domains] undefined undefined
1elo-3 [seq. related domains] undefined undefined
5aop-3 [seq. related domains] undefined undefined
1cg2d-2 [seq. related domains] undefined undefined
2fmr-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1ir3a-1 [seq. related domains] Alpha and beta (a+b) Protein kinases (PK), catalytic core N terminal Domain
2csn-1 [seq. related domains] Alpha and beta (a+b) Protein kinases (PK), catalytic core N terminal Domain
1aq1-2 [seq. related domains] Alpha and beta (a+b) Protein kinases (PK), catalytic core N terminal Domain
1vdeb-3 [seq. related domains] undefined undefined
1af5-1 [seq. related domains] undefined undefined
1hqi-1 [seq. related domains] undefined undefined
1vdeb-2 [seq. related domains] undefined undefined
1erk-2 [seq. related domains] undefined undefined
1a06-2 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk