3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 0.700

Ascend tree (bring in more domains)

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Classes% of representative set
undefined 41.89
Alpha and beta (a/b) 2.70
Alpha and beta (a+b) 52.70
All beta 1.35
All alpha 1.35
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 41.89 4.87
Alpha and beta (a/b)
Nucleotidyltransferases Domain I from 3Dee 2.70 0.73
Alpha and beta (a+b)
Chorismate mutase from 3Dee 1.35 0.52
DCoH-like from SCOP 2.70 1.04
Ferredoxin-like from SCOP 27.03 10.36
Hedgehog/DD-peptidase from SCOP 1.35 0.52
Histidine-containing phosphocarrier proteins (HPr) from SCOP 1.35 0.52
IF3-like from SCOP 1.35 0.52
KH-domain from SCOP 1.35 0.52
Phosphate binding protein-like inserted domain from 3Dee 1.35 0.52
Protein kinases (PK), catalytic core N terminal Domain from 3Dee 4.05 1.55
Ribosomal protein L7/12, C-terminal fragment from SCOP 1.35 0.52
S-adenosylmethionine synthetase. MAT outer domain from 3Dee 4.05 1.55
TBP-like from SCOP 1.35 0.52
Tautomerase/MIF from SCOP 2.70 1.04
Thymidine phosphorylase Domain III from 3Dee 1.35 0.52
All beta
Barrel-sandwich hybrid from SCOP 1.35 0.45
All alpha
Acyl carrier protein from 3Dee 1.35 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1acp-1 [seq. related domains] All alpha Acyl carrier protein
1comc-1 [seq. related domains] Alpha and beta (a+b) Chorismate mutase
1xxcf-1 [seq. related domains] Alpha and beta (a+b) DCoH-like
1dcph-1 [seq. related domains] Alpha and beta (a+b) DCoH-like
1eayd-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1up1-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1fxrb-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1kdnc-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1mla-2 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1acmd-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1elo-5 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1psdb-3 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1rcxv-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1vjw-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1regy-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
2fxb-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
2pii-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
2acy-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1pyta-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1spbp-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1dhmb-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1ris-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1auda-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1mli-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1vhh-1 [seq. related domains] Alpha and beta (a+b) Hedgehog/DD-peptidase
1jem-1 [seq. related domains] Alpha and beta (a+b) Histidine-containing phosphocarrier proteins (HPr)
1tig-1 [seq. related domains] Alpha and beta (a+b) IF3-like
1vih-1 [seq. related domains] Alpha and beta (a+b) KH-domain
1knyb-1 [seq. related domains] Alpha and beta (a/b) Nucleotidyltransferases Domain I
2bpgb-2 [seq. related domains] Alpha and beta (a/b) Nucleotidyltransferases Domain I
1rkm-2 [seq. related domains] Alpha and beta (a+b) Phosphate binding protein-like inserted domain
1ir3a-1 [seq. related domains] Alpha and beta (a+b) Protein kinases (PK), catalytic core N terminal Domain
1aq1-2 [seq. related domains] Alpha and beta (a+b) Protein kinases (PK), catalytic core N terminal Domain
2csn-1 [seq. related domains] Alpha and beta (a+b) Protein kinases (PK), catalytic core N terminal Domain
1ctf-1 [seq. related domains] Alpha and beta (a+b) Ribosomal protein L7/12, C-terminal fragment
1fugb-1 [seq. related domains] Alpha and beta (a+b) S-adenosylmethionine synthetase. MAT outer domain
1fugb-2 [seq. related domains] Alpha and beta (a+b) S-adenosylmethionine synthetase. MAT outer domain
1fugb-3 [seq. related domains] Alpha and beta (a+b) S-adenosylmethionine synthetase. MAT outer domain
1aisa-2 [seq. related domains] Alpha and beta (a+b) TBP-like
1otgc-1 [seq. related domains] Alpha and beta (a+b) Tautomerase/MIF
1otff-3 [seq. related domains] Alpha and beta (a+b) Tautomerase/MIF
1cg2d-2 [seq. related domains] undefined undefined
1hqi-1 [seq. related domains] undefined undefined
1vdeb-2 [seq. related domains] undefined undefined
1cumb-1 [seq. related domains] undefined undefined
2fmr-1 [seq. related domains] undefined undefined
1lbu-2 [seq. related domains] undefined undefined
1erk-2 [seq. related domains] undefined undefined
1a06-2 [seq. related domains] undefined undefined
1mifc-2 [seq. related domains] undefined undefined
2ppsc-1 [seq. related domains] undefined undefined
1bgw-3 [seq. related domains] undefined undefined
1vdeb-3 [seq. related domains] undefined undefined
1elo-3 [seq. related domains] undefined undefined
1fohd-2 [seq. related domains] undefined undefined
2tbd-1 [seq. related domains] undefined undefined
1af5-1 [seq. related domains] undefined undefined
1hmva-2 [seq. related domains] undefined undefined
5aop-1 [seq. related domains] undefined undefined
1dapb-2 [seq. related domains] undefined undefined
2u1a-1 [seq. related domains] undefined undefined
1xer-1 [seq. related domains] undefined undefined
5aop-3 [seq. related domains] undefined undefined
1vaob-1 [seq. related domains] undefined undefined
1lci-4 [seq. related domains] undefined undefined
1fit-1 [seq. related domains] undefined undefined
1an7b-1 [seq. related domains] undefined undefined
1fsz-2 [seq. related domains] undefined undefined
4rhn-1 [seq. related domains] undefined undefined
2aw0-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1bncb-4 [seq. related domains] All beta Barrel-sandwich hybrid
1tpt-3 [seq. related domains] Alpha and beta (a+b) Thymidine phosphorylase Domain III
1hdj-1 [seq. related domains] undefined undefined
1qapb-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.


3dee@compbio.dundee.ac.uk