|
|
3 Dee - Database of Protein Domain Definitions |
| Classes | % of representative set |
|---|---|
| undefined | 38.46 |
| Small proteins | 2.20 |
| Alpha and beta (a/b) | 7.69 |
| Alpha and beta (a+b) | 49.45 |
| All beta | 1.10 |
| All alpha | 1.10 |
| Breakdown into folds | % of cluster | % of class |
|---|---|---|
| undefined | ||
| undefined from 3Dee | 38.46 | 5.50 |
| Small proteins | ||
Ovomucoid/PCI-1 like inhibitors | 1.10 | 0.87 |
| RING finger domain from 3Dee | 1.10 | 0.87 |
| Alpha and beta (a/b) | ||
| Nucleotidyltransferases Domain I | 2.20 | 0.73 |
| PLP-dependent transferases Domain I | 1.10 | 0.36 |
| PLP-dependent transferases Domain II | 1.10 | 0.36 |
| PLP-dependent transferases smaller domain | 3.30 | 1.09 |
| Alpha and beta (a+b) | ||
| 2,3-Dihydroxybiphenyl dioxygenase (DHDB, BPHC enzyme) from 3Dee | 2.20 | 1.04 |
| Chorismate mutase from 3Dee | 1.10 | 0.52 |
| Cytochrome b5 | 1.10 | 0.52 |
| DCoH-like | 2.20 | 1.04 |
| Elongation Factor domain III from 3Dee | 2.20 | 1.04 |
| Ferredoxin-like | 21.98 | 10.36 |
| Hedgehog/DD-peptidase | 1.10 | 0.52 |
| Histidine-containing phosphocarrier proteins (HPr) | 1.10 | 0.52 |
| IF3-like | 1.10 | 0.52 |
| KH-domain | 1.10 | 0.52 |
| Phosphate binding protein-like inserted domain from 3Dee | 1.10 | 0.52 |
| Protein kinases (PK), catalytic core N terminal Domain from 3Dee | 3.30 | 1.55 |
| Ribosomal protein L7/12, C-terminal fragment | 1.10 | 0.52 |
| Ribosomal protein S5 domain 2-like | 1.10 | 0.52 |
| S-adenosylmethionine synthetase. MAT outer domain | 3.30 | 1.55 |
| TBP-like | 1.10 | 0.52 |
| Tautomerase/MIF | 2.20 | 1.04 |
| Thymidine phosphorylase Domain III from 3Dee | 1.10 | 0.52 |
| All beta | ||
| Barrel-sandwich hybrid | 1.10 | 0.45 |
| All alpha | ||
| Acyl carrier protein from 3Dee | 1.10 | 0.49 |
| 1acp-1 | [seq. related domains] | All alpha |
Acyl carrier protein |
| 1bncb-4 | [seq. related domains] | All beta |
Barrel-sandwich hybrid |
| 1comc-1 | [seq. related domains] | Alpha and beta (a+b) |
Chorismate mutase |
| 1dcph-1 | [seq. related domains] | Alpha and beta (a+b) |
DCoH-like |
| 1xxcf-1 | [seq. related domains] | Alpha and beta (a+b) |
DCoH-like |
| 1efgc-1 | [seq. related domains] | Alpha and beta (a+b) |
Elongation Factor domain III |
| 1efgb-1 | [seq. related domains] | Alpha and beta (a+b) |
Elongation Factor domain III |
| 1spbp-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1fxrb-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1kdnc-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1dhmb-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1acmd-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 2fxb-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1psdb-3 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1regy-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1vjw-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1pyta-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 2pii-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 2acy-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1rcxv-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1elo-5 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1eayd-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1up1-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1mla-2 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1mli-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1auda-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1ris-1 | [seq. related domains] | Alpha and beta (a+b) |
Ferredoxin-like |
| 1vhh-1 | [seq. related domains] | Alpha and beta (a+b) |
Hedgehog/DD-peptidase |
| 1jem-1 | [seq. related domains] | Alpha and beta (a+b) |
Histidine-containing phosphocarrier proteins (HPr) |
| 1tig-1 | [seq. related domains] | Alpha and beta (a+b) |
IF3-like |
| 1vih-1 | [seq. related domains] | Alpha and beta (a+b) |
KH-domain |
| 1knyb-1 | [seq. related domains] | Alpha and beta (a/b) |
Nucleotidyltransferases Domain I |
| 2bpgb-2 | [seq. related domains] | Alpha and beta (a/b) |
Nucleotidyltransferases Domain I |
| 1an1i-1 | [seq. related domains] | Small proteins |
Ovomucoid/PCI-1 like inhibitors |
| 1ajsb-1 | [seq. related domains] | Alpha and beta (a/b) |
PLP-dependent transferases Domain I |
| 2tplb-2 | [seq. related domains] | Alpha and beta (a/b) |
PLP-dependent transferases Domain II |
| 2tplb-1 | [seq. related domains] | Alpha and beta (a/b) |
PLP-dependent transferases smaller domain |
| 1ordb-3 | [seq. related domains] | Alpha and beta (a/b) |
PLP-dependent transferases smaller domain |
| 2canc-1 | [seq. related domains] | Alpha and beta (a/b) |
PLP-dependent transferases smaller domain |
| 1rkm-2 | [seq. related domains] | Alpha and beta (a+b) |
Phosphate binding protein-like inserted domain |
| 1aq1-2 | [seq. related domains] | Alpha and beta (a+b) |
Protein kinases (PK), catalytic core N terminal Domain |
| 1ir3a-1 | [seq. related domains] | Alpha and beta (a+b) |
Protein kinases (PK), catalytic core N terminal Domain |
| 2csn-1 | [seq. related domains] | Alpha and beta (a+b) |
Protein kinases (PK), catalytic core N terminal Domain |
| 1bor-1 | [seq. related domains] | Small proteins |
RING finger domain |
| 1ctf-1 | [seq. related domains] | Alpha and beta (a+b) |
Ribosomal protein L7/12, C-terminal fragment |
| 1pkp-2 | [seq. related domains] | Alpha and beta (a+b) |
Ribosomal protein S5 domain 2-like |
| 1fugb-2 | [seq. related domains] | Alpha and beta (a+b) |
S-adenosylmethionine synthetase. MAT outer domain |
| 1fugb-1 | [seq. related domains] | Alpha and beta (a+b) |
S-adenosylmethionine synthetase. MAT outer domain |
| 1fugb-3 | [seq. related domains] | Alpha and beta (a+b) |
S-adenosylmethionine synthetase. MAT outer domain |
| 1aisa-2 | [seq. related domains] | Alpha and beta (a+b) |
TBP-like |
| 1otff-3 | [seq. related domains] | Alpha and beta (a+b) |
Tautomerase/MIF |
| 1otgc-1 | [seq. related domains] | Alpha and beta (a+b) |
Tautomerase/MIF |
| 1tpt-3 | [seq. related domains] | Alpha and beta (a+b) |
Thymidine phosphorylase Domain III |
| 1an7b-1 | [seq. related domains] | undefined |
undefined |
| 1cg2d-2 | [seq. related domains] | undefined |
undefined |
| 1hqi-1 | [seq. related domains] | undefined |
undefined |
| 1vdeb-2 | [seq. related domains] | undefined |
undefined |
| 2fmr-1 | [seq. related domains] | undefined |
undefined |
| 1lbu-2 | [seq. related domains] | undefined |
undefined |
| 5aop-1 | [seq. related domains] | undefined |
undefined |
| 1a06-2 | [seq. related domains] | undefined |
undefined |
| 1af5-1 | [seq. related domains] | undefined |
undefined |
| 1rmd-1 | [seq. related domains] | undefined |
undefined |
| 5aop-3 | [seq. related domains] | undefined |
undefined |
| 2tbd-1 | [seq. related domains] | undefined |
undefined |
| 1qapb-1 | [seq. related domains] | undefined |
undefined |
| 1hdj-1 | [seq. related domains] | undefined |
undefined |
| 1elo-3 | [seq. related domains] | undefined |
undefined |
| 1fohd-2 | [seq. related domains] | undefined |
undefined |
| 1lci-4 | [seq. related domains] | undefined |
undefined |
| 4rhn-1 | [seq. related domains] | undefined |
undefined |
| 1hmva-2 | [seq. related domains] | undefined |
undefined |
| 1vdeb-3 | [seq. related domains] | undefined |
undefined |
| 2aw0-1 | [seq. related domains] | undefined |
undefined |
| 2u1a-1 | [seq. related domains] | undefined |
undefined |
| 1xer-1 | [seq. related domains] | undefined |
undefined |
| 1bgw-3 | [seq. related domains] | undefined |
undefined |
| 1vaob-1 | [seq. related domains] | undefined |
undefined |
| 2ppsc-1 | [seq. related domains] | undefined |
undefined |
| 1fsu-2 | [seq. related domains] | undefined |
undefined |
| 1mifc-2 | [seq. related domains] | undefined |
undefined |
| 1erk-2 | [seq. related domains] | undefined |
undefined |
| 1dapb-2 | [seq. related domains] | undefined |
undefined |
| 1fsz-2 | [seq. related domains] | undefined |
undefined |
| 1cumb-1 | [seq. related domains] | undefined |
undefined |
| 1fit-1 | [seq. related domains] | undefined |
undefined |
| 1han-2 | [seq. related domains] | Alpha and beta (a+b) |
2,3-Dihydroxybiphenyl dioxygenase (DHDB, BPHC enzyme) |
| 1han-1 | [seq. related domains] | Alpha and beta (a+b) |
2,3-Dihydroxybiphenyl dioxygenase (DHDB, BPHC enzyme) |
| 2axx-1 | [seq. related domains] | Alpha and beta (a+b) |
Cytochrome b5 |
| 1frod-2 | [seq. related domains] | undefined |
undefined |
| 1frod-4 | [seq. related domains] | undefined |
undefined |