3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 1.155

Ascend tree (bring in more domains)

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Classes% of representative set
undefined 26.14
Alpha and beta (a+b) 3.41
All beta 70.45
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 26.14 3.62
Alpha and beta (a+b)
Cell cycle regulatory proteins from SCOP 1.14 0.52
RuBisCO, small subunit from SCOP 1.14 0.52
Subtilisin inhibitor from SCOP 1.14 0.52
All beta
Colipase binding domain-like from 3Dee 2.27 0.89
Common fold of diphtheria toxin/transcription factors/cytochrome f from SCOP 2.27 0.89
Crystallins/protein S from 3Dee 2.27 0.89
Cupredoxins from SCOP 3.41 1.34
Double-stranded beta-helix, jelly-roll domain from 3Dee 1.14 0.45
Immunoglobulin-like beta-sandwich from SCOP 50.00 19.64
Prealbumin-like from SCOP 2.27 0.89
alpha-Amylase inhibitor from 3Dee 1.14 0.45
alpha-Amylases, beta-sheet domain from 3Dee 4.55 1.79
beta-Clip from 3Dee 1.14 0.45

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1dktb-1 [seq. related domains] Alpha and beta (a+b) Cell cycle regulatory proteins
1rp1-2 [seq. related domains] All beta Colipase binding domain-like
1yge-1 [seq. related domains] All beta Colipase binding domain-like
1exh-1 [seq. related domains] All beta Common fold of diphtheria toxin/transcription factors/cytochrome f
1prs-2 [seq. related domains] All beta Crystallins/protein S
1a5db-2 [seq. related domains] All beta Crystallins/protein S
2cbp-1 [seq. related domains] All beta Cupredoxins
1iuz-1 [seq. related domains] All beta Cupredoxins
1adwb-1 [seq. related domains] All beta Cupredoxins
1wapv-1 [seq. related domains] All beta Double-stranded beta-helix, jelly-roll domain
2msph-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1cfb-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1dant-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1tiu-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1bgmp-3 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1wiqb-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1zxq-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1bhgb-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1fieb-4 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1dant-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1ramb-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1wiu-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1hnf-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1suh-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1ten-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1euu-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1jrhi-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1hwgc-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1ebpb-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1a25b-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
3dpa-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1bgmp-5 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1fieb-5 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1a8jl-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1cid-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1pamb-3 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
3dpa-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1neu-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1wiqb-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1zxq-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1cfb-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1gog-3 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1cid-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1jrhl-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1itbb-3 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1hwgc-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1fnf-3 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
2ncm-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1ctn-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1pamb-4 [seq. related domains] All beta Prealbumin-like
2tryb-1 [seq. related domains] All beta Prealbumin-like
1rcxw-1 [seq. related domains] Alpha and beta (a+b) RuBisCO, small subunit
3ssi-1 [seq. related domains] Alpha and beta (a+b) Subtilisin inhibitor
2ait-1 [seq. related domains] All beta alpha-Amylase inhibitor
6taa-2 [seq. related domains] All beta alpha-Amylases, beta-sheet domain
1dhka-2 [seq. related domains] All beta alpha-Amylases, beta-sheet domain
1vjs-3 [seq. related domains] All beta alpha-Amylases, beta-sheet domain
1pamb-2 [seq. related domains] All beta alpha-Amylases, beta-sheet domain
1dun-1 [seq. related domains] All beta beta-Clip
1ad2-1 [seq. related domains] undefined undefined
1itbb-1 [seq. related domains] undefined undefined
1rhoc-1 [seq. related domains] undefined undefined
1ksr-1 [seq. related domains] undefined undefined
1whp-1 [seq. related domains] undefined undefined
2amg-2 [seq. related domains] undefined undefined
1acc-4 [seq. related domains] undefined undefined
1ebpb-1 [seq. related domains] undefined undefined
1qbb-1 [seq. related domains] undefined undefined
1wkt-1 [seq. related domains] undefined undefined
1lktf-3 [seq. related domains] undefined undefined
1cto-1 [seq. related domains] undefined undefined
4kbpd-1 [seq. related domains] undefined undefined
1qbb-4 [seq. related domains] undefined undefined
1ag4-1 [seq. related domains] undefined undefined
1ah1-1 [seq. related domains] undefined undefined
2snwb-1 [seq. related domains] undefined undefined
1tul-1 [seq. related domains] undefined undefined
1svb-2 [seq. related domains] undefined undefined
1itbb-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1ycsa-1 [seq. related domains] All beta Common fold of diphtheria toxin/transcription factors/cytochrome f
1azvb-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1fieb-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1eso-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1ncob-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1ll1-4 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1xbrb-1 [seq. related domains] undefined undefined
1a02n-1 [seq. related domains] undefined undefined
1ramb-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk