3Dee - Database of Protein Domain Definitions

You have supplied PDB code 1toc

Class	Complex (Hydrolase/INHIBITOR)
Compound	Mol_id: 1; Molecule: Thrombin; Chain: A, B, C, D, E, F, G, H; Ec: 3.4.21.5; Mol_id: 2; Molecule: Ornithodorin; Chain: R, S, T, U; Engineered: Yes
Author	A.Van de locht,R.Huber,W.Bode
Model type	XRAY
Resolution	3.100000

[PDB file header]

Domain Definitions

Default Definition

This definition is from UDE.1 Thu Jul 1 17:43:59 BST 1999

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Domain Segment FROM TO See Domain Enter Classification

1toca-1 1 A:1:B A:11:- Rasmol Enter

2 B:24:- B:121:-

3 B:234:- B:247:-

Class (from SCOP) : All beta
(from 3Dee) : All beta

Fold (from SCOP) : Trypsin-like serine proteases
(from 3Dee) : Trypsin-like serine proteases Domain I

1toca-2 1 A:12:- A:14:L Rasmol Enter

2 B:16:- B:23:-

3 B:122:- B:233:-

Class (from SCOP) : All beta
(from 3Dee) : All beta

Fold (from SCOP) : Trypsin-like serine proteases
(from 3Dee) : Trypsin-like serine proteases Domain II

Domain	Segment	FROM	TO	See Domain	Enter Classification
1toca-1	1	A:1:B	A:11:-	Rasmol	Enter
2	B:24:-	B:121:-
3	B:234:-	B:247:-
Class	(from SCOP) : All beta (from 3Dee) : All beta
Fold	(from SCOP) : Trypsin-like serine proteases (from 3Dee) : Trypsin-like serine proteases Domain I
1toca-2	1	A:12:-	A:14:L	Rasmol	Enter
2	B:16:-	B:23:-
3	B:122:-	B:233:-
Class	(from SCOP) : All beta (from 3Dee) : All beta
Fold	(from SCOP) : Trypsin-like serine proteases (from 3Dee) : Trypsin-like serine proteases Domain II

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Domain Definitions

Default Definition

This definition is from UDE Thu Jul 1 17:46:09 BST 1999

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Domain Segment FROM TO See Domain Enter Classification

1tocb-1 1 A:1:B A:11:- Rasmol Enter

2 B:24:- B:121:-

3 B:234:- B:247:-

Class (from SCOP) : All beta
(from 3Dee) : All beta

Fold (from SCOP) : Trypsin-like serine proteases
(from 3Dee) : Trypsin-like serine proteases Domain I

1tocb-2 1 A:12:- A:14:L Rasmol Enter

2 B:16:- B:23:-

3 B:122:- B:233:-

Class (from SCOP) : All beta
(from 3Dee) : All beta

Fold (from SCOP) : Trypsin-like serine proteases
(from 3Dee) : Trypsin-like serine proteases Domain II

Domain	Segment	FROM	TO	See Domain	Enter Classification
1tocb-1	1	A:1:B	A:11:-	Rasmol	Enter
2	B:24:-	B:121:-
3	B:234:-	B:247:-
Class	(from SCOP) : All beta (from 3Dee) : All beta
Fold	(from SCOP) : Trypsin-like serine proteases (from 3Dee) : Trypsin-like serine proteases Domain I
1tocb-2	1	A:12:-	A:14:L	Rasmol	Enter
2	B:16:-	B:23:-
3	B:122:-	B:233:-
Class	(from SCOP) : All beta (from 3Dee) : All beta
Fold	(from SCOP) : Trypsin-like serine proteases (from 3Dee) : Trypsin-like serine proteases Domain II

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Domain Definitions

Default Definition

This definition is from UDE Fri May 7 16:52:40 BST 1999

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Domain Segment FROM TO See Domain Enter Classification

1tocr-1 1 R:1:A R:54:- Rasmol Enter

Class (from SCOP) : Small proteins

Fold (from SCOP) : BPTI-like

1tocr-2 1 R:55:- R:119:- Rasmol Enter

Class (from SCOP) : Small proteins

Fold (from SCOP) : BPTI-like

Domain	Segment	FROM	TO	See Domain	Enter Classification
1tocr-1	1	R:1:A	R:54:-	Rasmol	Enter
Class	(from SCOP) : Small proteins
Fold	(from SCOP) : BPTI-like
1tocr-2	1	R:55:-	R:119:-	Rasmol	Enter
Class	(from SCOP) : Small proteins
Fold	(from SCOP) : BPTI-like

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Domain Definitions

Default Definition

This definition is from UDE.1 Thu Jul 1 17:36:33 BST 1999

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Domain Segment FROM TO See Domain Enter Classification

1tocc-1 1 C:1:B C:11:- Rasmol Enter

2 D:24:- D:121:-

3 D:234:- D:247:-

Class (from SCOP) : All beta
(from 3Dee) : All beta

Fold (from SCOP) : Trypsin-like serine proteases
(from 3Dee) : Trypsin-like serine proteases Domain I

1tocc-2 1 C:12:- C:14:L Rasmol Enter

2 D:16:- D:23:-

3 D:122:- D:233:-

Class (from SCOP) : All beta
(from 3Dee) : All beta

Fold (from SCOP) : Trypsin-like serine proteases
(from 3Dee) : Trypsin-like serine proteases Domain II

Domain	Segment	FROM	TO	See Domain	Enter Classification
1tocc-1	1	C:1:B	C:11:-	Rasmol	Enter
2	D:24:-	D:121:-
3	D:234:-	D:247:-
Class	(from SCOP) : All beta (from 3Dee) : All beta
Fold	(from SCOP) : Trypsin-like serine proteases (from 3Dee) : Trypsin-like serine proteases Domain I
1tocc-2	1	C:12:-	C:14:L	Rasmol	Enter
2	D:16:-	D:23:-
3	D:122:-	D:233:-
Class	(from SCOP) : All beta (from 3Dee) : All beta
Fold	(from SCOP) : Trypsin-like serine proteases (from 3Dee) : Trypsin-like serine proteases Domain II

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Domain Definitions

Default Definition

This definition is from UDE Thu Jul 1 17:39:20 BST 1999

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Domain Segment FROM TO See Domain Enter Classification

1tocd-1 1 C:1:B C:11:- Rasmol Enter

2 D:24:- D:121:-

3 D:234:- D:247:-

Class (from SCOP) : All beta
(from 3Dee) : All beta

Fold (from SCOP) : Trypsin-like serine proteases
(from 3Dee) : Trypsin-like serine proteases Domain I

1tocd-2 1 C:12:- C:14:L Rasmol Enter

2 D:16:- D:23:-

3 D:122:- D:233:-

Class (from SCOP) : All beta
(from 3Dee) : All beta

Fold (from SCOP) : Trypsin-like serine proteases
(from 3Dee) : Trypsin-like serine proteases Domain II

Domain	Segment	FROM	TO	See Domain	Enter Classification
1tocd-1	1	C:1:B	C:11:-	Rasmol	Enter
2	D:24:-	D:121:-
3	D:234:-	D:247:-
Class	(from SCOP) : All beta (from 3Dee) : All beta
Fold	(from SCOP) : Trypsin-like serine proteases (from 3Dee) : Trypsin-like serine proteases Domain I
1tocd-2	1	C:12:-	C:14:L	Rasmol	Enter
2	D:16:-	D:23:-
3	D:122:-	D:233:-
Class	(from SCOP) : All beta (from 3Dee) : All beta
Fold	(from SCOP) : Trypsin-like serine proteases (from 3Dee) : Trypsin-like serine proteases Domain II

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Domain Definitions

Default Definition

This definition is from AUTO.1 produced automatically by alignment with 1tocr

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Domain Segment FROM TO See Domain Enter Classification

1tocs-1 1 S:1:A S:54:- Rasmol Enter

Class (from SCOP) : Small proteins

Fold (from SCOP) : BPTI-like

1tocs-2 1 S:55:- S:119:- Rasmol Enter

Class (from SCOP) : Small proteins

Fold (from SCOP) : BPTI-like

Domain	Segment	FROM	TO	See Domain	Enter Classification
1tocs-1	1	S:1:A	S:54:-	Rasmol	Enter
Class	(from SCOP) : Small proteins
Fold	(from SCOP) : BPTI-like
1tocs-2	1	S:55:-	S:119:-	Rasmol	Enter
Class	(from SCOP) : Small proteins
Fold	(from SCOP) : BPTI-like

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Domain Definitions

Default Definition

This definition is from UDE.1 Thu Jul 1 18:06:36 BST 1999

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Domain Segment FROM TO See Domain Enter Classification

1toce-1 1 E:1:B E:11:- Rasmol Enter

2 F:24:- F:121:-

3 F:234:- F:247:-

Class (from SCOP) : All beta
(from 3Dee) : All beta

Fold (from SCOP) : Trypsin-like serine proteases
(from 3Dee) : Trypsin-like serine proteases Domain I

1toce-2 1 E:12:- E:14:L Rasmol Enter

2 F:16:- F:23:-

3 F:122:- F:233:-

Class (from SCOP) : All beta
(from 3Dee) : All beta

Fold (from SCOP) : Trypsin-like serine proteases
(from 3Dee) : Trypsin-like serine proteases Domain II

Domain	Segment	FROM	TO	See Domain	Enter Classification
1toce-1	1	E:1:B	E:11:-	Rasmol	Enter
2	F:24:-	F:121:-
3	F:234:-	F:247:-
Class	(from SCOP) : All beta (from 3Dee) : All beta
Fold	(from SCOP) : Trypsin-like serine proteases (from 3Dee) : Trypsin-like serine proteases Domain I
1toce-2	1	E:12:-	E:14:L	Rasmol	Enter
2	F:16:-	F:23:-
3	F:122:-	F:233:-
Class	(from SCOP) : All beta (from 3Dee) : All beta
Fold	(from SCOP) : Trypsin-like serine proteases (from 3Dee) : Trypsin-like serine proteases Domain II

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Domain Definitions

Default Definition

This definition is from UDE Thu Jul 1 18:09:38 BST 1999

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Domain Segment FROM TO See Domain Enter Classification

1tocf-1 1 E:1:B E:11:- Rasmol Enter

2 F:24:- F:121:-

3 F:234:- F:247:-

Class (from SCOP) : All beta
(from 3Dee) : All beta

Fold (from SCOP) : Trypsin-like serine proteases
(from 3Dee) : Trypsin-like serine proteases Domain I

1tocf-2 1 E:12:- E:14:L Rasmol Enter

2 F:16:- F:23:-

3 F:122:- F:233:-

Class (from SCOP) : All beta
(from 3Dee) : All beta

Fold (from SCOP) : Trypsin-like serine proteases
(from 3Dee) : Trypsin-like serine proteases Domain II

Domain	Segment	FROM	TO	See Domain	Enter Classification
1tocf-1	1	E:1:B	E:11:-	Rasmol	Enter
2	F:24:-	F:121:-
3	F:234:-	F:247:-
Class	(from SCOP) : All beta (from 3Dee) : All beta
Fold	(from SCOP) : Trypsin-like serine proteases (from 3Dee) : Trypsin-like serine proteases Domain I
1tocf-2	1	E:12:-	E:14:L	Rasmol	Enter
2	F:16:-	F:23:-
3	F:122:-	F:233:-
Class	(from SCOP) : All beta (from 3Dee) : All beta
Fold	(from SCOP) : Trypsin-like serine proteases (from 3Dee) : Trypsin-like serine proteases Domain II

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Domain Definitions

Default Definition

This definition is from AUTO.1 produced automatically by alignment with 1tocr

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Domain Segment FROM TO See Domain Enter Classification

1toct-1 1 T:1:A T:54:- Rasmol Enter

Class (from SCOP) : Small proteins

Fold (from SCOP) : BPTI-like

1toct-2 1 T:55:- T:119:- Rasmol Enter

Class (from SCOP) : Small proteins

Fold (from SCOP) : BPTI-like

Domain	Segment	FROM	TO	See Domain	Enter Classification
1toct-1	1	T:1:A	T:54:-	Rasmol	Enter
Class	(from SCOP) : Small proteins
Fold	(from SCOP) : BPTI-like
1toct-2	1	T:55:-	T:119:-	Rasmol	Enter
Class	(from SCOP) : Small proteins
Fold	(from SCOP) : BPTI-like

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Domain Definitions

Default Definition

This definition is from UDE.1 Thu Jul 1 18:12:59 BST 1999

[View domains]

Domain Segment FROM TO See Domain Enter Classification

1tocg-1 1 G:1:B G:11:- Rasmol Enter

2 H:24:- H:121:-

3 H:234:- H:247:-

Class (from SCOP) : All beta
(from 3Dee) : All beta

Fold (from SCOP) : Trypsin-like serine proteases
(from 3Dee) : Trypsin-like serine proteases Domain I

1tocg-2 1 G:12:- G:14:L Rasmol Enter

2 H:16:- H:23:-

3 H:122:- H:233:-

Class (from SCOP) : All beta
(from 3Dee) : All beta

Fold (from SCOP) : Trypsin-like serine proteases
(from 3Dee) : Trypsin-like serine proteases Domain II

Domain	Segment	FROM	TO	See Domain	Enter Classification
1tocg-1	1	G:1:B	G:11:-	Rasmol	Enter
2	H:24:-	H:121:-
3	H:234:-	H:247:-
Class	(from SCOP) : All beta (from 3Dee) : All beta
Fold	(from SCOP) : Trypsin-like serine proteases (from 3Dee) : Trypsin-like serine proteases Domain I
1tocg-2	1	G:12:-	G:14:L	Rasmol	Enter
2	H:16:-	H:23:-
3	H:122:-	H:233:-
Class	(from SCOP) : All beta (from 3Dee) : All beta
Fold	(from SCOP) : Trypsin-like serine proteases (from 3Dee) : Trypsin-like serine proteases Domain II

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Domain Definitions

Default Definition

This definition is from UDE Thu Jul 1 18:15:16 BST 1999

[View domains]

Domain Segment FROM TO See Domain Enter Classification

1toch-1 1 G:1:B G:11:- Rasmol Enter

2 H:24:- H:121:-

3 H:234:- H:247:-

Class (from SCOP) : All beta
(from 3Dee) : All beta

Fold (from SCOP) : Trypsin-like serine proteases
(from 3Dee) : Trypsin-like serine proteases Domain I

1toch-2 1 G:12:- G:14:L Rasmol Enter

2 H:16:- H:23:-

3 H:122:- H:233:-

Class (from SCOP) : All beta
(from 3Dee) : All beta

Fold (from SCOP) : Trypsin-like serine proteases
(from 3Dee) : Trypsin-like serine proteases Domain II

Domain	Segment	FROM	TO	See Domain	Enter Classification
1toch-1	1	G:1:B	G:11:-	Rasmol	Enter
2	H:24:-	H:121:-
3	H:234:-	H:247:-
Class	(from SCOP) : All beta (from 3Dee) : All beta
Fold	(from SCOP) : Trypsin-like serine proteases (from 3Dee) : Trypsin-like serine proteases Domain I
1toch-2	1	G:12:-	G:14:L	Rasmol	Enter
2	H:16:-	H:23:-
3	H:122:-	H:233:-
Class	(from SCOP) : All beta (from 3Dee) : All beta
Fold	(from SCOP) : Trypsin-like serine proteases (from 3Dee) : Trypsin-like serine proteases Domain II

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Domain Definitions

Default Definition

This definition is from AUTO.1 produced automatically by alignment with 1tocr

[View domains]

Domain Segment FROM TO See Domain Enter Classification

1tocu-1 1 U:1:A U:54:- Rasmol Enter

Class (from SCOP) : Small proteins

Fold (from SCOP) : BPTI-like

1tocu-2 1 U:55:- U:119:- Rasmol Enter

Class (from SCOP) : Small proteins

Fold (from SCOP) : BPTI-like

Domain	Segment	FROM	TO	See Domain	Enter Classification
1tocu-1	1	U:1:A	U:54:-	Rasmol	Enter
Class	(from SCOP) : Small proteins
Fold	(from SCOP) : BPTI-like
1tocu-2	1	U:55:-	U:119:-	Rasmol	Enter
Class	(from SCOP) : Small proteins
Fold	(from SCOP) : BPTI-like

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3dee@compbio.dundee.ac.uk