3Dee - Database of Protein Domain Definitions

You have supplied PDB code 1urp

Class	Transport
Compound	Mol_id: 1; Molecule: D-ribose-binding Protein; Chain: A, B, C, D; Engineered: Yes; Biological_unit: Monomer
Author	A.J.Bjorkman,S.L.Mowbray
Model type	XRAY
Resolution	2.300000

[PDB file header]

Domain Definitions

Default Definition

This definition is from AUTO.1 produced automatically by alignment with 2gbp

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Domain Segment FROM TO See Domain Enter Classification

1urpa-1 1 A:1:- A:103:- Rasmol Enter

2 A:236:- A:270:-

Class (from SCOP) : Alpha and beta (a/b)
(from 3Dee) : Alpha and beta (a/b)

Fold (from SCOP) : Periplasmic binding protein-like I
(from 3Dee) : Periplasmic binding protein-like I Domain I

1urpa-2 1 A:104:- A:235:- Rasmol Enter

2 A:271:- A:271:-

Class (from SCOP) : Alpha and beta (a/b)
(from 3Dee) : Alpha and beta (a/b)

Fold (from SCOP) : Periplasmic binding protein-like I
(from 3Dee) : Periplasmic binding protein-like I Domain II

Domain	Segment	FROM	TO	See Domain	Enter Classification
1urpa-1	1	A:1:-	A:103:-	Rasmol	Enter
2	A:236:-	A:270:-
Class	(from SCOP) : Alpha and beta (a/b) (from 3Dee) : Alpha and beta (a/b)
Fold	(from SCOP) : Periplasmic binding protein-like I (from 3Dee) : Periplasmic binding protein-like I Domain I
1urpa-2	1	A:104:-	A:235:-	Rasmol	Enter
2	A:271:-	A:271:-
Class	(from SCOP) : Alpha and beta (a/b) (from 3Dee) : Alpha and beta (a/b)
Fold	(from SCOP) : Periplasmic binding protein-like I (from 3Dee) : Periplasmic binding protein-like I Domain II

[Show alternative domain definitions for this chain]

Domain Definitions

Default Definition

This definition is from AUTO.1 produced automatically by alignment with 2gbp

[View domains]

Domain Segment FROM TO See Domain Enter Classification

1urpb-1 1 B:1:- B:103:- Rasmol Enter

2 B:236:- B:270:-

Class (from SCOP) : Alpha and beta (a/b)
(from 3Dee) : Alpha and beta (a/b)

Fold (from SCOP) : Periplasmic binding protein-like I
(from 3Dee) : Periplasmic binding protein-like I Domain I

1urpb-2 1 B:104:- B:235:- Rasmol Enter

2 B:271:- B:271:-

Class (from SCOP) : Alpha and beta (a/b)
(from 3Dee) : Alpha and beta (a/b)

Fold (from SCOP) : Periplasmic binding protein-like I
(from 3Dee) : Periplasmic binding protein-like I Domain II

Domain	Segment	FROM	TO	See Domain	Enter Classification
1urpb-1	1	B:1:-	B:103:-	Rasmol	Enter
2	B:236:-	B:270:-
Class	(from SCOP) : Alpha and beta (a/b) (from 3Dee) : Alpha and beta (a/b)
Fold	(from SCOP) : Periplasmic binding protein-like I (from 3Dee) : Periplasmic binding protein-like I Domain I
1urpb-2	1	B:104:-	B:235:-	Rasmol	Enter
2	B:271:-	B:271:-
Class	(from SCOP) : Alpha and beta (a/b) (from 3Dee) : Alpha and beta (a/b)
Fold	(from SCOP) : Periplasmic binding protein-like I (from 3Dee) : Periplasmic binding protein-like I Domain II

[Show alternative domain definitions for this chain]

Domain Definitions

Default Definition

This definition is from AUTO.1 produced automatically by alignment with 2gbp

[View domains]

Domain Segment FROM TO See Domain Enter Classification

1urpc-1 1 C:1:- C:103:- Rasmol Enter

2 C:236:- C:270:-

Class (from SCOP) : Alpha and beta (a/b)
(from 3Dee) : Alpha and beta (a/b)

Fold (from SCOP) : Periplasmic binding protein-like I
(from 3Dee) : Periplasmic binding protein-like I Domain I

1urpc-2 1 C:104:- C:235:- Rasmol Enter

2 C:271:- C:271:-

Class (from SCOP) : Alpha and beta (a/b)
(from 3Dee) : Alpha and beta (a/b)

Fold (from SCOP) : Periplasmic binding protein-like I
(from 3Dee) : Periplasmic binding protein-like I Domain II

Domain	Segment	FROM	TO	See Domain	Enter Classification
1urpc-1	1	C:1:-	C:103:-	Rasmol	Enter
2	C:236:-	C:270:-
Class	(from SCOP) : Alpha and beta (a/b) (from 3Dee) : Alpha and beta (a/b)
Fold	(from SCOP) : Periplasmic binding protein-like I (from 3Dee) : Periplasmic binding protein-like I Domain I
1urpc-2	1	C:104:-	C:235:-	Rasmol	Enter
2	C:271:-	C:271:-
Class	(from SCOP) : Alpha and beta (a/b) (from 3Dee) : Alpha and beta (a/b)
Fold	(from SCOP) : Periplasmic binding protein-like I (from 3Dee) : Periplasmic binding protein-like I Domain II

[Show alternative domain definitions for this chain]

Domain Definitions

Default Definition

This definition is from AUTO.1 produced automatically by alignment with 2gbp

[View domains]

Domain Segment FROM TO See Domain Enter Classification

1urpd-1 1 D:1:- D:103:- Rasmol Enter

2 D:236:- D:270:-

Class (from SCOP) : Alpha and beta (a/b)
(from 3Dee) : Alpha and beta (a/b)

Fold (from SCOP) : Periplasmic binding protein-like I
(from 3Dee) : Periplasmic binding protein-like I Domain I

1urpd-2 1 D:104:- D:235:- Rasmol Enter

2 D:271:- D:271:-

Class (from SCOP) : Alpha and beta (a/b)
(from 3Dee) : Alpha and beta (a/b)

Fold (from SCOP) : Periplasmic binding protein-like I
(from 3Dee) : Periplasmic binding protein-like I Domain II

Domain	Segment	FROM	TO	See Domain	Enter Classification
1urpd-1	1	D:1:-	D:103:-	Rasmol	Enter
2	D:236:-	D:270:-
Class	(from SCOP) : Alpha and beta (a/b) (from 3Dee) : Alpha and beta (a/b)
Fold	(from SCOP) : Periplasmic binding protein-like I (from 3Dee) : Periplasmic binding protein-like I Domain I
1urpd-2	1	D:104:-	D:235:-	Rasmol	Enter
2	D:271:-	D:271:-
Class	(from SCOP) : Alpha and beta (a/b) (from 3Dee) : Alpha and beta (a/b)
Fold	(from SCOP) : Periplasmic binding protein-like I (from 3Dee) : Periplasmic binding protein-like I Domain II

[Show alternative domain definitions for this chain]

3dee@compbio.dundee.ac.uk