3Dee - Database of Protein Domain Definitions

SCOP-like Classification

Class

Fold	number of domains in representative set	number of domains in representative set as a %	number of domains in entire database	number of domains in entire database as a %
4-bladed beta-propeller from SCOP	1	0.06	5	0.03
6-bladed beta-propeller from SCOP	3	0.17	49	0.26
7-bladed beta-propeller from SCOP	3	0.17	27	0.14
Acid proteases Domain I from 3Dee	4	0.23	270	1.43
Acid proteases Domain II from 3Dee	2	0.12	82	0.43
Acyl-CoA dehydrogenase (flavoprotein), middle domain, barrel like from 3Dee	1	0.06	22	0.12
Adenovirus type 5 fiber protein, knob domain from 3Dee	1	0.06	1	0.01
Bacteriochlorophyl A protein from SCOP	1	0.06	3	0.02
Barrel-sandwich hybrid from SCOP	7	0.41	27	0.14
Barwin-like endoglucanases from 3Dee	1	0.06	2	0.01
Carbonic anhydrase from SCOP	1	0.06	108	0.57
Colipase binding domain-like from 3Dee	2	0.12	11	0.06
Common fold of diphtheria toxin/transcription factors/cytochrome f from SCOP	4	0.23	18	0.10
ConA-like lectins/glucanases from SCOP	6	0.35	245	1.30
Crystallins/protein S from 3Dee	2	0.12	33	0.17
Cupredoxins from SCOP	9	0.52	216	1.14
Cyclophilin from 3Dee	1	0.06	71	0.38
Double-stranded beta-helix, jelly-roll domain from 3Dee	4	0.23	97	0.51
Elongation factor Tu (EF-Tu), the C-terminal domain from 3Dee	1	0.06	13	0.07
Galactose-binding domain-like from SCOP	4	0.23	25	0.13
Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain from 3Dee	1	0.06	7	0.04
Glycosyl-asparaginase from 3Dee	1	0.06	3	0.02
GroES-like from SCOP	1	0.06	76	0.40
Immunoglobulin-like beta-sandwich from SCOP	46	2.68	1384	7.32
Lipocalins from SCOP	4	0.23	70	0.37
Mu transposase, C-terminal domain from 3Dee	1	0.06	3	0.02
Near-membrane domain of membrane proteins from 3Dee	1	0.06	34	0.18
Neurophysin II from SCOP	1	0.06	4	0.02
OB-fold from SCOP	13	0.76	142	0.75
P-loop containing nucleotide triphosphate hydrolases small insert from 3Dee	2	0.12	22	0.12
PH domain-like from SCOP	2	0.12	8	0.04
Prealbumin-like from SCOP	3	0.17	246	1.30
Pyruvate kinase beta-barrel domain from SCOP	2	0.12	9	0.05
Reductase/elongation factor common domain from 3Dee	6	0.35	29	0.15
SH3-like barrel from SCOP	4	0.23	69	0.37
Segmented RNA-genome viruses' proteins from SCOP	1	0.06	37	0.20
Segmented RNA-genome viruses' proteins Bluetongue virus coat protein central domain from 3Dee	1	0.06	9	0.05
Single-stranded left-handed beta-helix Domain I from 3Dee	1	0.06	1	0.01
Single-stranded left-handed beta-helix Domain II from 3Dee	1	0.06	1	0.01
Single-stranded right-handed beta-helix from SCOP	2	0.12	11	0.06
Streptavidin-like from SCOP	2	0.12	90	0.48
Supersandwich from SCOP	2	0.12	31	0.16
Thaumatin from 3Dee	1	0.06	5	0.03
Trypsin-like serine proteases Domain I from 3Dee	4	0.23	475	2.51
Trypsin-like serine proteases Domain II from 3Dee	3	0.17	475	2.51
Tumor necrosis factor from 3Dee	2	0.12	14	0.07
Tumor necrosis factor receptor Domain II from 3Dee	1	0.06	5	0.03
Type I DNA topoisomerase beta barrel domain from 3Dee	1	0.06	1	0.01
Viral coat and capsid proteins from SCOP	35	2.04	321	1.70
alpha-Amylase inhibitor from 3Dee	1	0.06	4	0.02
alpha-Amylases, beta-sheet domain from 3Dee	4	0.23	33	0.17
alpha-Subunit of urease, composite domain from SCOP	1	0.06	19	0.10
beta-Clip from 3Dee	2	0.12	25	0.13
beta-Prism I from SCOP	2	0.12	4	0.02
beta-Prism II from SCOP	1	0.06	11	0.06
beta-Roll from SCOP	1	0.06	6	0.03
beta-Trefoil from SCOP	9	0.52	77	0.41
Total	224	13.06	5086	26.92