3Dee - Database of Protein Domain Definitions


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SCOP-like Classification

Class

All alpha

Fold number of domains in representative set number of domains in representative set as a % number of domains in entire database number of domains in entire database as a %
4-helical cytokines from SCOP 10 0.58 54 0.29
4-helical cytokines Short chain from 3Dee 2 0.12 8 0.04
4-helical cytokines fragment from 3Dee 1 0.06 4 0.02
6-phosphogluconate & Acyl-CoA dehydrogenases, C-terminal domain from 3Dee 1 0.06 5 0.03
Acyl carrier protein from 3Dee 1 0.06 1 0.01
Acyl-CoA binding protein from 3Dee 1 0.06 2 0.01
Acyl-CoA dehydrogenase (flavoprotein), N-terminal domain from 3Dee 1 0.06 22 0.12
Aldehyde ferredoxin oxidoreductase, C-terminal domain from 3Dee 1 0.06 2 0.01
Aldehyde ferredoxin oxidoreductase, middle domain from 3Dee 1 0.06 2 0.01
Anaphylotoxins (complement system) from SCOP 1 0.06 3 0.02
Annexin Domain from 3Dee 2 0.12 115 0.61
Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain I from 3Dee 1 0.06 1 0.01
Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain II from 3Dee 1 0.06 1 0.01
Apolipophorin-III from SCOP 1 0.06 1 0.01
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin from SCOP 3 0.17 13 0.07
Bluetongue virus coat protein vp7 (BTV-10 vp7), alpha-helical domain from SCOP 1 0.06 6 0.03
Chorismate mutase II from SCOP 2 0.12 12 0.06
Citrate synthase Domain I from 3Dee 2 0.12 23 0.12
Citrate synthase Domain II from 3Dee 2 0.12 23 0.12
Cytochrome P450 from SCOP 2 0.12 34 0.18
Cytochrome c from SCOP 9 0.52 81 0.43
DNA polymerase beta, N-terminal (8 kD)-domain from 3Dee 1 0.06 6 0.03
DNA-binding 3-helical bundle from 3Dee 15 0.87 77 0.41
Diphtheria toxin repressor (DtxR) dimerization domain from 3Dee 1 0.06 4 0.02
Disulphide-bond formation facilitator (DSBA), insertion domain from SCOP 1 0.06 15 0.08
Double-stranded beta-helix, helical domain from 3Dee 1 0.06 27 0.14
EF-hand from 3Dee 9 0.52 182 0.96
Ectatomin, A & B chains from SCOP 1 0.06 2 0.01
Endonuclease III from 3Dee 2 0.12 2 0.01
FIS protein from 3Dee 1 0.06 10 0.05
Ferritin like from 3Dee 6 0.35 79 0.42
Four-helical up-and-down bundle from SCOP 12 0.70 101 0.53
Globin-like from SCOP 7 0.41 457 2.42
Glutathione S-transferases, C-terminal domain from SCOP 2 0.12 90 0.48
Glycosyltransferases of the superhelical fold Domain I from 3Dee 2 0.12 16 0.08
Glycosyltransferases of the superhelical fold Domain II from 3Dee 2 0.12 16 0.08
GroEL, the ATPase domain from 3Dee 1 0.06 36 0.19
HMG-box from SCOP 2 0.12 11 0.06
Helix-loop-helix DNA-binding domain from SCOP 1 0.06 4 0.02
Heme-dependent peroxidases Domain I from 3Dee 2 0.12 73 0.39
Heme-dependent peroxidases Domain II from 3Dee 2 0.12 73 0.39
Heme-linked catalases C-terminal domain from 3Dee 1 0.06 7 0.04
Heme-linked catalases N-terminal fragment from 3Dee 1 0.06 11 0.06
Hemocyanin, N-terminal domain from SCOP 2 0.12 11 0.06
Hemocyanin, middle domain I from 3Dee 4 0.23 11 0.06
Hemocyanin, middle domain II from 3Dee 1 0.06 11 0.06
Hexokinase all helical domain from 3Dee 1 0.06 2 0.01
Histone-fold from SCOP 2 0.12 4 0.02
Immunoglobulin-binding protein A, fragment B from 3Dee 2 0.12 12 0.06
Inserted domain into FAD (also NAD)-binding motif for Glucose oxidase from 3Dee 1 0.06 1 0.01
Isoprenyl diphosphate synthases from 3Dee 1 0.06 5 0.03
Lipoxigenase-1, A DNA topoisomerase I domain from 3Dee 1 0.06 3 0.02
Lipoxigenase-1, C-terminal domain from 3Dee 1 0.06 3 0.02
Long alpha-hairpin from SCOP 6 0.35 58 0.31
Lysin from SCOP 1 0.06 3 0.02
Met repressor-like from SCOP 3 0.17 32 0.17
Methane monooxygenase hydrolase, gamma subunit from 3Dee 1 0.06 6 0.03
Methionine synthase domain from 3Dee 1 0.06 2 0.01
Mu transposase, DNA-binding domain from 3Dee 1 0.06 2 0.01
N-terminal nucleophile aminohydrolases (Ntn hydrolases) B chain Domain from 3Dee 1 0.06 20 0.11
Nucleotidyltransferases Domain III from 3Dee 1 0.06 103 0.55
Oligomers of long helices from 3Dee 15 0.87 84 0.44
P-loop containing nucleotide triphosphate hydrolases all helical domain from 3Dee 1 0.06 17 0.09
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase domain from 3Dee 2 0.12 5 0.03
Pheromone proteins from 3Dee 1 0.06 1 0.01
Phospholipase A2 from 3Dee 2 0.12 70 0.37
Photosynthetic reaction centre (cytochrome subunit) from 3Dee 1 0.06 4 0.02
Prokaryotic histone-like protein from 3Dee 2 0.12 8 0.04
Pyruvate oxidase and decarboxylase, C terminal domain from 3Dee 1 0.06 4 0.02
ROP protein from 3Dee 1 0.06 5 0.03
Restriction endonucleases helical domain from 3Dee 1 0.06 4 0.02
Retroviral matrix proteins from SCOP 1 0.06 8 0.04
Spectrin repeat unit from 3Dee 1 0.06 5 0.03
T4 endonuclease V from SCOP 1 0.06 5 0.03
Thermolysin-like metalloproteases, C-terminal domain from SCOP 2 0.12 24 0.13
Thymidine phosphorylase Domain I from 3Dee 1 0.06 1 0.01
Transducin (alpha subunit), insertion domain from SCOP 1 0.06 23 0.12
Trp repressor from SCOP 1 0.06 16 0.08
Tyrosyl-tRNA synthetase, middle domain from 3Dee 1 0.06 8 0.04
Uteroglobin-like from SCOP 1 0.06 6 0.03
Winged DNA binding like from 3Dee 2 0.12 2 0.01
beta-Lactamase/D-ala carboxypeptidase Domain II from 3Dee 1 0.06 23 0.12
beta-Lactamase/D-ala carboxypeptidasea inserted domain from 3Dee 1 0.06 4 0.02
lambda repressor-like DNA-binding domains from SCOP 8 0.47 61 0.32
p53 tetramerization domain from SCOP 1 0.06 50 0.26
small domain attached to TIM barrel from 3Dee 2 0.12 4 0.02
the C-terminal domain of RNA polymerase alpha subunit from 3Dee 1 0.06 1 0.01
Total 203 11.84 2444 12.93


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3dee@compbio.dundee.ac.uk