Peter Troshin:  Peter is supported by a number of grants including the BBSRC Structural Proteomics Inititiative to develop computational systems based on webservices and other technologies.  Photo soon!

Peter joined the group on 1st July 2009

Nick Schurch: Nick is a member of the  Data Analysis Group (DAG) a sub-group of the Barton Group.  He is supported by funding from the Scottish Universities Life Science Alliance (SULSA)  as part of our venture to carry out innovative data analysis for high data content/high -throughput techniques such as proteomics mass-spectrometry and next generation DNA sequencing.

Nick, like Marek, has also made the transition from astronomy to biology.  Nick studied for an MSci in physics at the University of Bristol, before completing his astrophysics Ph.D. at the University of Leicester.  Nick has had postdoc positions on three continents (Europe, USA and Asia) culminating with a UK-China Fellowshiop for Excellence with the Institute for High Energy Physics in Beijing, China, before joining the Data Analysis Group.  Nick has always had a strong interest in biology (despite studying physics) and is particularly looking forward to working in a field with more immediate relevance to the world!  Nick enjoys playing bridge and football and is a lifelong Liverpool fan and is also looking forward to improving on the (very) little Mandarin he picked up in China.

Nick joined the DAG on 1st May 2009

Marek Gierlinski: Marek is a member of the Data Analysis Group (DAG) a sub-group of the Barton Group.  He is supported by funding from the Wellcome Trust Centre for Gene Regulation and Expression as part of our joint venture to carry out innovative data analysis for high data content/high-throughput techniques such as proteomics mass-spectrometry and next generation DNA sequencing.

Marek was born and educated in Poland. He graduated from the Jagiellonian University in Krakow and completed his PhD in astrophysics at N. Copernicus Centre in Warsaw. He moved to Durham in 2000 as a postdoc and stayed there until 2009 in a succession of research and teaching positions. His main interest there was weird astrophysical objects: black holes and neutron stars. 2009 marked a dramatic change in his career: switching to Bioinformatics. One huge step for a man…

Marek joined the DAG on 23rd March 2009

Pieta Schofield: Pieta is a member of the Data Analysis Group (DAG) a sub-group of the Barton Group.  Pieta is supported by funding from the Wellcome Trust Centre for Gene Regulation and Expression as part of our joint venture to carry out innovative data analysis for high data content/high-throughput techniques such as proteomics mass-spectrometry and next generation DNA sequencing.

After working as a programmer and systems analyst for various finance sector companies, Pieta spent five years working as systems manager for the Parke-Davis Neuroscience Research Centre in Cambridge. She then returned to academia completing a PhD in mathematical biology at the University of Dundee in 2002. Since then she completed a Wellcome Trust Training Fellowship in Mathematical Biology, switching theoretical insects for the real thing.  Pieta joined the Data Analysis Group in January 2009 from the SCRI where she developed methods for thermographic detection of plant stress.

Pietà joined the DAG on 1st January 2009

Dan Bolser: Post Doc with David Martin working on BBSRC funded  Potato genome sequencing project in collaboration with the Scottish Crop Research Institute.

Dan joined David's  group on 21st July 2008.

Mark McDowall: BBSRC Funded
Ph.D. Student.

Mark did his undergraduate degree at the University of Durham in Molecular Biology and Biochemistry.   Realising that he enjoyed computers more than pipettes and  gels, he went to the University of York to do an MRes in Bioinformatics.       After taking a year out working in the IT department at the City of York  Council he jumped ship and ventured north to start a Ph.D. on the prediction of protein-protein interactions.

When he is not programming or reading papers he enjoys photography, walking,  cycling and badminton, plus when he gets the chance,  jive and ballroom dancing.

Mark joined the group on 10th September 2007.

Chris Cole:  Senior Bioinformatics Research Officer and founder member of the Data Analysis Group.

As another ex-Simon Hubbard group member (like Ian) Chris found the attraction of Dundee too great to miss.  He dragged his family along with him, although, his wife was happy to be back in Scotland!

Chris left the bench after a traumatising Ph.D. and has been 'doing' Bioinformatics ever since. In that time he has worked on protein-protein interface prediction, homology modelling, Prion protein structure analysis and various aspects of proteomics. Now in Dundee Chris works on a variety of projects, but mainly in the realm of protein structure. Under his remit in the Scottish Bioinformatics Research Network, Chris is always happy to discuss interesting problems which may have a Bioinformatics angle.
 

Chris joined the group on 1st Feb 2006 and then became the founding member of the Data Analysis Group.

Michelle Scott - Canadian Institutes of Health Research (CIHR) funded fellow.

After a bachelor degree in biochemistry at the Universite de Montreal and a Masters in biochemistry and molecular biology under the supervision of Karl Riabowol at the University of
Calgary near the beautiful Canadian Rockies, Michelle decided that she missed math and physics.  As a consequence, she undertook a degree in computer engineering at McGill University in Montreal.  After two years, she switched to a PhD in bioinformatics/biochemistry at McGill under the co-supervision of Mike Hallett and David Thomas, studying protein subcellular localization.  She moved to Dundee in the fall of 2005 to work as a CIHR post-doctoral fellow.  Michelle is interested in protein-protein interaction networks with a particular focus on the nucleolus.

Starting date: 1st December 2005

Christelle Robert - Scottish Crop Research Institute (SCRI) student based at SCRI with primary supervision by Frank Wright and Leighton Pritchard at the SCRI but co-supervised by Geoff.

Jim Procter -After working on the  BBSRC VAMSAS project, Jim is now funded by the EU ENFIN project to work on various aspects of systems biology software applied to biological data.

His BBSRC Funded   postdoctoral RA position was to work on the Visualisation and Analysis of Biological Sequences Alignments and structures project.  In particular the development of Jalview and the VAMSAS exchange API.

Jim came across the water from the University of Hamburg's ZBH to implement bioinformatics analysis web services for Jalview, as part of the BBSRC funded VAMSAS project.  After spending a number of years working on protein structure comparison and structure prediction, his dream is never to have to write a script again - but concedes that he might be being a little bit too hopeful there...

Starting Date:  1st November 2004.

 Tom Walsh - did his first degree in Biochemistry at Trinity College Dublin and then moved to University College Dublin for a PhD on modelling cytokine receptor complexes. He moved to Dundee in 2002 to work on the EC funded project TEMBLOR.

TEMBLOR is funded by European Community Contract No. QLRI-CT-2001-00015 for "TEMBLOR"  under the specific RTD programme "Quality  of Life and Management of Living Resources" Tom maintains the group's MSD  installation and his other interests include writing a Perl library for interfacing with the SCOP database hierarchy running STAMP searches in parallel on the group's computing cluster and building a database of pairwise structure comparisons of SCOP domains.

From 1st July 2005 Tom has transferred to a SHEFC funded position as part of the Scottish Bioinformatics Research Network (SBRN).

Tom claims to be able to program in Fortran and play the accordion but the group has so far been spared these dubious accomplishments.  In his spare time he enjoys collecting useless trivia.

David Martin    - Is the Post Genomics and Molecular Interactions Centre Bioinformatics Scientific Officer. David graduated with a degree in Chemistry from Kings College London in 1991. He completed a PhD in protein structure/function at the MRC Clinical Sciences Centre, Hammersmith  in Ted Tuddenham's group before taking up an EMBO postdoctoral fellowship in Oslo. An EU TMR fellowship as part of the GeneQuiz project allowed David to develop his bioinformatics skills and he took the position as Head of the Norwegian EMBNet node  at the University of Oslo in August 1999. Following his move to Dundee in March 2001 David has a broad responsibility to develop bioinformatics support, training and services for the emerging data intensive science that is going on in the School of Life Sciences.  David's scientific interests include genome annotation and data management. He has developed the GOtcha Tool which annotates sequences with GO term.  He also  collects genomes to annotate, preferably ones from nasty organisms such as Malaria and Sleeping Sickness. His interest is in improving the annotations, working out how to tell the annotations have improved (not as easy as you might think) and looking at these anntoations in a systems biology context.

His external interests seem to involve rebuilding cars, houses and boats when he isn't out in the mountains or enjoying family life.  He also plays the clarinet and saxophone but not as well as you'd want to be listening to.

Geoff Barton did his first degree in Biochemistry at the University of Manchester. He then did a Ph.D. supervised by Mike Sternberg in the Department of Crystallography, Birkbeck College, University of London before spending two years as an ICRF Fellow working with Chris Rawlings at the Imperial Cancer Research Fund Labs. in London. In 1989 he was awarded a Royal Society University Research Fellowship to work in the Lab of Molecular Biophysics, University of Oxford. From April 1995 until October 1997, Geoff was also Head of Genome Informatics at the Wellcome Trust Centre for Human Genetics.  

From 1st October 1997-July 2001 Geoff was a Research and Development Team Leader at the EMBL European Bioinformatics Institute.  

From 1st January 1998-July 2001 Geoff was also  head of the European Macromolecular Structure Database at EBI.  

From 30th March 2001 Geoff has been Professor of Bioinformatics at the School of Life Sciences, University of Dundee.  Geoff moved to Dundee full-time in July 2001 and is now co-director (with Mike Ferguson) of the Post Genomics and Molecular Interactions Centre.

Geoff used to spend his leisure time working with the Men in Black, he then teamed up with the The Three Musketeers  but  in Oct 2009  joined The Swimmers.  In July 2005 he also discovered tennis and after finding like-minded musical colleagues in Dundee,  revived his love of flute playing.