The AMAS Analysis of Multiply Aligned Sequences - User Guide and AMAS Server. 

AMAS is a program to analyse multiple alignments of protein sequences. It allows the identification of functional residues by comparison of sub-groups of sequences arranged on a tree .  AMAS runs alscript to generate pretty coloured alignments that look a bit like this:

Also see the Java program JalView that implements many of the ideas from AMAS, but allows for interactive fiddling with the alignment. 

This site was last updated: Thursday, 23 June, 2005

Geoff Barton, Bioinformatics and Computational Biology Research, University of Dundee, Scotland