AMAS is a program to analyse multiple alignments of protein sequences. It allows the identification of functional residues by comparison of sub
-groups of sequences arranged on a tree. AMAS runs alscript to generate pretty coloured alignments that look a bit like this:
Also see the Java program JalView that implements many of the ideas from AMAS, but allows for interactive fiddling with the alignment.
sequences. It allows the identification of functional residues by comparison of sub
-groups of sequences arranged on a tree. AMAS runs