Version 2.07c - 23rd December 2010

Add new MASK commands:

MASK MATCH ALL <string>

This sets up a MASK where every character that matches a character in the string is masked.

MASK MASKID ALL <n>

Counts the number of masked characters at a position and if >= n keeps the mask. If < n then the mask 
is reset for that column.  This is useful to highlight all positions that have at least n hydrophobic amino acids. 

Version 2.07b - 14th November 2002

Add  CONSERVATION_SAVE  <filename>

option to save conservation numbers calculated in alscript
Update affiliation to Dundee


Version 2.07a  - 23 March 2000

No substantive changes - just some reorganisation of the files in the 
distribution.


Version 2.07   - 9 July 1999

Minor changes to makefiles to allow compilation of all modules under Linux.  Addition
of cygwin .dll file to allow the code to run under windows.

Please see the README_WINDOWS file.

Version 2.06

Includes options by Morten Kjeldgaard <mok@imsb.au.dk>

small arrow up          filled/hollow   (@fsuparrow/@suparrow)
small arrow down        filled/hollow   (@fsdownarrow/@sdownarrow)
diamond                 filled/hollow   (@fdiamond/@diamond)
bar                     filled/hollow   (@fbar/@bar)
                                                                             
Thanks to Morten for making these additions available.


 
