\hypertarget{fold__vars_8h_source}{
\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/fold\_\-vars.h}
}


\begin{footnotesize}\begin{alltt}
00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_FOLD\_VARS\_H\_\_}
00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_FOLD\_VARS\_H\_\_}
00003 \textcolor{preprocessor}{}
00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data_structures.h}"}
00005 
00012 \textcolor{preprocessor}{#define PUBLIC}
00013 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define PRIVATE static}
00014 \textcolor{preprocessor}{}
00018 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{fold__vars_8h_a0afc287c2464866d94858c39175154af}{fold_constrained};
00019 
00027 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{fold__vars_8h_a097eccaabd6ae8b4fef83cccff85bb5d}{noLonelyPairs};
00028 
00050 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_a72b511ed1201f7e23ec437e468790d74}{dangles};
00051 
00055 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_abf380d09e4f1ab94fc6af57cf0ad5d32}{noGU};
00056 
00060 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_aa8d1c7b92489179e1eafa562b7bdd259}{no_closingGU};
00061 
00067 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_a4f6265bdf0ead7ff4628a360adbfd77e}{tetra_loop};
00068 
00076 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_afb1ef1166da85092ae8a325e02dcae71}{energy_set};
00077 
00081 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_af9202a1a09f5828dc731e2d9a10fa111}{circ};
00082 
00086 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_af2763d55a74663a5e60652b8880baa5b}{csv};
00087 
00091 \textcolor{keyword}{extern} \textcolor{keywordtype}{int} \hyperlink{fold__vars_8h_ac408868ba00671cbc7d1d535105af045}{oldAliEn};
00095 \textcolor{keyword}{extern} \textcolor{keywordtype}{int} \hyperlink{fold__vars_8h_a0656afca1d2853f9ee6591172f5638de}{ribo};            
00096 
00101 \textcolor{keyword}{extern} \textcolor{keywordtype}{char} *\hyperlink{fold__vars_8h_a5dbaa0cca2c8c82048a0f0e38e164944}{RibosumFile};   
00102 
00110 \textcolor{keyword}{extern} \textcolor{keywordtype}{char} *\hyperlink{fold__vars_8h_a2695d91cc535d09c2eae5c3884e2ec64}{nonstandards};
00111 
00118 \textcolor{keyword}{extern} \textcolor{keywordtype}{double} \hyperlink{fold__vars_8h_ab4b11c8d9c758430960896bc3fe82ead}{temperature};
00119 
00124 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_af349001ad3b4d008d0051d935b1b6261}{james_rule};
00125 
00129 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold_8h_a80c3c5fd35e7479704cc91d2d0367743}{logML};
00130 
00142 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold_8h_ab9b2c3a37a5516614c06d0ab54b97cda}{cut_point};
00143 
00150 \textcolor{keyword}{extern} \hyperlink{structbondT}{bondT}  *\hyperlink{fold__vars_8h_a0244a629b5ab4f58b77590c3dfd130dc}{base_pair};
00151 
00157 \textcolor{keyword}{extern} FLT\_OR\_DBL *\hyperlink{fold__vars_8h_a0f5757427fd5f2f79d6fca0081cd5a52}{pr};
00158 
00165 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}   *\hyperlink{fold__vars_8h_a92089ae3a51b5d75a14ce9cc29cc8317}{iindx};
00166 
00178 \textcolor{keyword}{extern} \textcolor{keywordtype}{double} \hyperlink{fold__vars_8h_ad3b22044065acc6dee0af68931b52cfd}{pf_scale};
00179 
00186 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{fold__vars_8h_ad512b5dd4dbec60faccfe137bb474489}{do_backtrack};
00187 
00195 \textcolor{keyword}{extern} \textcolor{keywordtype}{char} \hyperlink{fold__vars_8h_a83bdb43472a259c71e69fa9f70f420c3}{backtrack_type};
00196 
00200 \textcolor{keyword}{extern} \textcolor{keywordtype}{int} \hyperlink{fold__vars_8h_a25f2bdcdf56e813d288845484a13d704}{gquad};
00201 
00202 
00203 \textcolor{keywordtype}{char} * option\_string(\textcolor{keywordtype}{void});
00204 
00215 \textcolor{keywordtype}{void} \hyperlink{fold__vars_8h_a4c3257186a796182462f18a5480ac8b3}{set_model_details}(\hyperlink{structmodel__detailsT}{model_detailsT} *md);
00216 
00217 \textcolor{preprocessor}{#endif}
\end{alltt}\end{footnotesize}
