\hypertarget{LPfold_8h_source}{
\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/LPfold.h}
}


\begin{footnotesize}\begin{alltt}
00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_LPFOLD\_H\_\_}
00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_LPFOLD\_H\_\_}
00003 \textcolor{preprocessor}{}
00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data_structures.h}"}
00005 
00006 \textcolor{preprocessor}{#ifdef \_\_GNUC\_\_}
00007 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func \_\_attribute\_\_ ((deprecated))}
00008 \textcolor{preprocessor}{}\textcolor{preprocessor}{#else}
00009 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func}
00010 \textcolor{preprocessor}{}\textcolor{preprocessor}{#endif}
00011 \textcolor{preprocessor}{}
00029 \textcolor{keywordtype}{void} \hyperlink{group__local__pf__fold_ga5a019014d37fe6105131dfc2fc447880}{update_pf_paramsLP}(\textcolor{keywordtype}{int} length);
00030 
00037 \textcolor{keywordtype}{void} update\_pf\_paramsLP\_par(\textcolor{keywordtype}{int} length, \hyperlink{structpf__paramT}{pf_paramT} *parameters);
00038 
00076 \hyperlink{structplist}{plist} *\hyperlink{group__local__pf__fold_gaa1ecd401617ebc748a0220026543c777}{pfl_fold}(\textcolor{keywordtype}{char} *sequence,
00077                 \textcolor{keywordtype}{int} winSize,
00078                 \textcolor{keywordtype}{int} pairSize,
00079                 \textcolor{keywordtype}{float} cutoffb,
00080                 \textcolor{keywordtype}{double} **pU,
00081                 \textcolor{keyword}{struct} \hyperlink{structplist}{plist} **dpp2,
00082                 FILE *pUfp,
00083                 FILE *spup);
00084 
00091 \hyperlink{structplist}{plist} *\hyperlink{group__local__pf__fold_gab354507e8028f3e1c52ef96bb1eb9df8}{pfl_fold_par}(\textcolor{keywordtype}{char} *sequence,
00092                     \textcolor{keywordtype}{int} winSize,
00093                     \textcolor{keywordtype}{int} pairSize,
00094                     \textcolor{keywordtype}{float} cutoffb,
00095                     \textcolor{keywordtype}{double} **pU,
00096                     \textcolor{keyword}{struct} \hyperlink{structplist}{plist} **dpp2,
00097                     FILE *pUfp,
00098                     FILE *spup,
00099                     \hyperlink{structpf__paramT}{pf_paramT} *parameters);
00100 
00101 
00102 \textcolor{keywordtype}{void} putoutpU\_prob\_par( \textcolor{keywordtype}{double} **pU,
00103                         \textcolor{keywordtype}{int} length,
00104                         \textcolor{keywordtype}{int} ulength,
00105                         FILE *fp,
00106                         \textcolor{keywordtype}{int} energies,
00107                         \hyperlink{structpf__paramT}{pf_paramT} *parameters);
00108 
00109 
00124 \textcolor{keywordtype}{void}    \hyperlink{group__local__pf__fold_ga0bcb751860bbf34e3dfee8c2fbdb3ef3}{putoutpU_prob}(\textcolor{keywordtype}{double} **pU,
00125                       \textcolor{keywordtype}{int} length,
00126                       \textcolor{keywordtype}{int} ulength,
00127                       FILE *fp,
00128                       \textcolor{keywordtype}{int} energies);
00129 
00130 \textcolor{keywordtype}{void} putoutpU\_prob\_bin\_par( \textcolor{keywordtype}{double} **pU,
00131                             \textcolor{keywordtype}{int} length,
00132                             \textcolor{keywordtype}{int} ulength,
00133                             FILE *fp,
00134                             \textcolor{keywordtype}{int} energies,
00135                             \hyperlink{structpf__paramT}{pf_paramT} *parameters);
00136 
00151 \textcolor{keywordtype}{void}    \hyperlink{group__local__pf__fold_ga9acb00ee10e96b1ca4ea394cd8bcec75}{putoutpU_prob_bin}(\textcolor{keywordtype}{double} **pU,
00152                           \textcolor{keywordtype}{int} length,
00153                           \textcolor{keywordtype}{int} ulength,
00154                           FILE *fp,
00155                           \textcolor{keywordtype}{int} energies);
00156 
00162 DEPRECATED(\textcolor{keywordtype}{void} \hyperlink{LPfold_8h_ae85bf55053e9fb295208be322e0fa07a}{init_pf_foldLP}(\textcolor{keywordtype}{int} length));
00163 
00164 \textcolor{preprocessor}{#endif}
\end{alltt}\end{footnotesize}
