- Main Page
- Related Pages
- Modules
- Data Structures
- Files

- File List
- Globals

# /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/RNAstruct.h

Go to the documentation of this file.

    00001 #ifndef __VIENNA_RNA_PACKAGE_RNASTRUCT_H__
    00002 #define __VIENNA_RNA_PACKAGE_RNASTRUCT_H__
    00003
    00024 #define STRUC     2000
    00025
    00033 char *b2HIT(const char *structure);             /* Full   -> HIT    [incl. root] */
    00034
    00042 char *b2C(const char *structure);               /* Full   -> Coarse [incl. root] */
    00043
    00052 char *b2Shapiro(const char *structure);         /* Full -> weighted Shapiro [i.r.] */
    00053
    00060 char *add_root(const char *structure);                   /* {Tree} -> ({Tree}R)          */
    00061
    00069 char  *expand_Shapiro(const char *coarse);
    00070
    00071 /* add S for stacks to coarse struct */
    00079 char  *expand_Full(const char *structure);      /* Full   -> FFull         */
    00080
    00088 char  *unexpand_Full(const char *ffull);        /* FFull  -> Full          */
    00089
    00096 char  *unweight(const char *wcoarse);           /* remove weights from coarse struct */
    00097
    00107 void   unexpand_aligned_F(char *align[2]);
    00108
    00119 void   parse_structure(const char *structure);  /* make structure statistics */
    00120
    00125 extern int    loop_size[STRUC];       /* loop sizes of a structure */
    00126
    00130 extern int    helix_size[STRUC];      /* helix sizes of a structure */
    00131
    00135 extern int    loop_degree[STRUC];     /* loop degrees of a structure */
    00136
    00140 extern int    loops;                  /* n of loops and stacks */
    00141
    00145 extern int    unpaired;
    00146
    00150 extern int    pairs;        /* n of unpaired digits and pairs */
    00151
    00152 #endif