\hypertarget{group__local__fold}{
\section{Predicting Locally stable structures of large sequences}
\label{group__local__fold}\index{Predicting Locally stable structures of large sequences@{Predicting Locally stable structures of large sequences}}
}


Collaboration diagram for Predicting Locally stable structures of large sequences:\nopagebreak
\begin{figure}[H]
\begin{center}
\leavevmode
\includegraphics[width=413pt]{group__local__fold}
\end{center}
\end{figure}
\subsection*{Modules}
\begin{DoxyCompactItemize}
\item 
\hyperlink{group__local__mfe__fold}{Local MFE structure Prediction and Z-\/scores}
\item 
\hyperlink{group__local__pf__fold}{Partition functions for locally stable secondary structures}
\item 
\hyperlink{group__local__consensus__fold}{Local MFE consensus structures for Sequence Alignments}
\end{DoxyCompactItemize}


\subsection{Detailed Description}
Local structures can be predicted by a modified version of the \hyperlink{group__mfe__fold_gaadafcb0f140795ae62e5ca027e335a9b}{fold()} algorithm that restricts the span of all base pairs. 