\hypertarget{group__local__mfe__fold}{
\section{Local MFE structure Prediction and Z-\/scores}
\label{group__local__mfe__fold}\index{Local MFE structure Prediction and Z-\/scores@{Local MFE structure Prediction and Z-\/scores}}
}


Collaboration diagram for Local MFE structure Prediction and Z-\/scores:\nopagebreak
\begin{figure}[H]
\begin{center}
\leavevmode
\includegraphics[width=280pt]{group__local__mfe__fold}
\end{center}
\end{figure}
\subsection*{Functions}
\begin{DoxyCompactItemize}
\item 
float \hyperlink{group__local__mfe__fold_ga16e5a70e60835bb969eaecbe6482f1be}{Lfold} (const char $\ast$string, char $\ast$structure, int maxdist)
\begin{DoxyCompactList}\small\item\em The local analog to \hyperlink{group__mfe__fold_gaadafcb0f140795ae62e5ca027e335a9b}{fold()}. \item\end{DoxyCompactList}\item 
float \hyperlink{group__local__mfe__fold_gab6d79eecc180f586679f7b85cce5cbe9}{Lfoldz} (const char $\ast$string, char $\ast$structure, int maxdist, int zsc, double min\_\-z)
\end{DoxyCompactItemize}


\subsection{Function Documentation}
\hypertarget{group__local__mfe__fold_ga16e5a70e60835bb969eaecbe6482f1be}{
\index{local\_\-mfe\_\-fold@{local\_\-mfe\_\-fold}!Lfold@{Lfold}}
\index{Lfold@{Lfold}!local_mfe_fold@{local\_\-mfe\_\-fold}}
\subsubsection[{Lfold}]{\setlength{\rightskip}{0pt plus 5cm}float Lfold (const char $\ast$ {\em string}, \/  char $\ast$ {\em structure}, \/  int {\em maxdist})}}
\label{group__local__mfe__fold_ga16e5a70e60835bb969eaecbe6482f1be}


The local analog to \hyperlink{group__mfe__fold_gaadafcb0f140795ae62e5ca027e335a9b}{fold()}. Computes the minimum free energy structure including only base pairs with a span smaller than 'maxdist'


\begin{DoxyParams}{Parameters}
\item[{\em string}]\item[{\em structure}]\item[{\em maxdist}]\end{DoxyParams}
\hypertarget{group__local__mfe__fold_gab6d79eecc180f586679f7b85cce5cbe9}{
\index{local\_\-mfe\_\-fold@{local\_\-mfe\_\-fold}!Lfoldz@{Lfoldz}}
\index{Lfoldz@{Lfoldz}!local_mfe_fold@{local\_\-mfe\_\-fold}}
\subsubsection[{Lfoldz}]{\setlength{\rightskip}{0pt plus 5cm}float Lfoldz (const char $\ast$ {\em string}, \/  char $\ast$ {\em structure}, \/  int {\em maxdist}, \/  int {\em zsc}, \/  double {\em min\_\-z})}}
\label{group__local__mfe__fold_gab6d79eecc180f586679f7b85cce5cbe9}

\begin{DoxyParams}{Parameters}
\item[{\em string}]\item[{\em structure}]\item[{\em maxdist}]\item[{\em zsc}]\item[{\em min\_\-z}]\end{DoxyParams}
