\hypertarget{svm__utils_8h_source}{
\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/svm\_\-utils.h}
}


\begin{footnotesize}\begin{alltt}
00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_SUBOPT\_H\_\_}
00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_SUBOPT\_H\_\_}
00003 \textcolor{preprocessor}{}
\hypertarget{svm__utils_8h_source_l00004}{}\hyperlink{structsvm__model}{00004} \textcolor{keyword}{typedef} \textcolor{keyword}{struct }\hyperlink{structsvm__model}{svm_model}\{
00005   \textcolor{keyword}{struct }svm\_parameter param;
00006   \textcolor{keywordtype}{int} nr\_class;
00007   \textcolor{keywordtype}{int} l;
00008   \textcolor{keyword}{struct }svm\_node **SV;
00009   \textcolor{keywordtype}{double} **sv\_coef;
00010   \textcolor{keywordtype}{double} *rho;
00011   \textcolor{keywordtype}{double} *probA;
00012   \textcolor{keywordtype}{double} *probB;
00013   \textcolor{keywordtype}{int} *label;
00014   \textcolor{keywordtype}{int} *nSV;
00015   \textcolor{keywordtype}{int} free\_sv;
00016 \} \hyperlink{structsvm__model}{svm_model};
00017 
00018 \textcolor{keyword}{extern}  \textcolor{keywordtype}{char} *avg\_model\_string;
00019 \textcolor{keyword}{extern}  \textcolor{keywordtype}{char} *sd\_model\_string;
00020 
00021 \textcolor{keywordtype}{float}     get\_z(\textcolor{keywordtype}{char} *sequence,
00022                 \textcolor{keywordtype}{double} energy);
00023 \textcolor{keywordtype}{double}    avg\_regression (\textcolor{keywordtype}{int} N,
00024                           \textcolor{keywordtype}{int} A,
00025                           \textcolor{keywordtype}{int} C,
00026                           \textcolor{keywordtype}{int} G,
00027                           \textcolor{keywordtype}{int} T,
00028                           \textcolor{keyword}{struct} \hyperlink{structsvm__model}{svm_model} *avg\_model,
00029                           \textcolor{keywordtype}{int} *info );
00030 \textcolor{keywordtype}{double}    sd\_regression  (\textcolor{keywordtype}{int} N,
00031                           \textcolor{keywordtype}{int} A,
00032                           \textcolor{keywordtype}{int} C,
00033                           \textcolor{keywordtype}{int} G,
00034                           \textcolor{keywordtype}{int} T,
00035                           \textcolor{keyword}{struct} \hyperlink{structsvm__model}{svm_model}  *sd\_model);
00036 \textcolor{keywordtype}{double}    minimal\_sd     (\textcolor{keywordtype}{int} N,
00037                           \textcolor{keywordtype}{int} A,
00038                           \textcolor{keywordtype}{int} C,
00039                           \textcolor{keywordtype}{int} G,
00040                           \textcolor{keywordtype}{int} T);
00041 \hyperlink{structsvm__model}{svm_model} *svm\_load\_model\_string(\textcolor{keywordtype}{char} *modelString);
00042 \textcolor{keywordtype}{int}       *get\_seq\_composition( \textcolor{keywordtype}{short} *S,
00043                                 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} start,
00044                                 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} stop);
00045 
00046 \textcolor{preprocessor}{#endif}
\end{alltt}\end{footnotesize}
