\hypertarget{2Dfold_8h}{
\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dfold.h File Reference}
\label{2Dfold_8h}\index{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dfold.h@{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dfold.h}}
}
Include dependency graph for 2Dfold.h:\nopagebreak
\begin{figure}[H]
\begin{center}
\leavevmode
\includegraphics[width=210pt]{2Dfold_8h__incl}
\end{center}
\end{figure}
\subsection*{Functions}
\begin{DoxyCompactItemize}
\item 
\hyperlink{structTwoDfold__vars}{TwoDfold\_\-vars} $\ast$ \hyperlink{group__kl__neighborhood__mfe_gac9284f132cf0eaa0a2f43590eda05488}{get\_\-TwoDfold\_\-variables} (const char $\ast$seq, const char $\ast$structure1, const char $\ast$structure2, int \hyperlink{fold__vars_8h_af9202a1a09f5828dc731e2d9a10fa111}{circ})
\begin{DoxyCompactList}\small\item\em Get a structure of type \hyperlink{structTwoDfold__vars}{TwoDfold\_\-vars} prefilled with current global settings. \item\end{DoxyCompactList}\item 
void \hyperlink{group__kl__neighborhood__mfe_ga05bf4f31d216b1b160fd2d3d68e9b487}{destroy\_\-TwoDfold\_\-variables} (\hyperlink{structTwoDfold__vars}{TwoDfold\_\-vars} $\ast$our\_\-variables)
\begin{DoxyCompactList}\small\item\em Destroy a \hyperlink{structTwoDfold__vars}{TwoDfold\_\-vars} datastructure without memory loss. \item\end{DoxyCompactList}\item 
\hyperlink{structTwoDfold__solution}{TwoDfold\_\-solution} $\ast$ \hyperlink{group__kl__neighborhood__mfe_ga47da790166020558d27323aef489703e}{TwoDfoldList} (\hyperlink{structTwoDfold__vars}{TwoDfold\_\-vars} $\ast$vars, int distance1, int distance2)
\begin{DoxyCompactList}\small\item\em Compute MFE's and representative for distance partitioning. \item\end{DoxyCompactList}\item 
char $\ast$ \hyperlink{group__kl__neighborhood__mfe_gaf4dc05bf8fc1ea53acd7aeb798ba80c2}{TwoDfold\_\-backtrack\_\-f5} (unsigned int j, int k, int l, \hyperlink{structTwoDfold__vars}{TwoDfold\_\-vars} $\ast$vars)
\begin{DoxyCompactList}\small\item\em Backtrack a minimum free energy structure from a 5' section of specified length. \item\end{DoxyCompactList}\end{DoxyCompactItemize}


\subsection{Detailed Description}
