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# /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/PS_dot.h

Go to the documentation of this file.

    00001 #ifndef __VIENNA_RNA_PACKAGE_PS_DOT_H__
    00002 #define __VIENNA_RNA_PACKAGE_PS_DOT_H__
    00003
    00004 #include "data_structures.h"
    00005 #include "plot_layouts.h"
    00006
    00007 #ifdef __GNUC__
    00008 #define DEPRECATED(func) func __attribute__ ((deprecated))
    00009 #else
    00010 #define DEPRECATED(func) func
    00011 #endif
    00012
    00019 /* write PostScript drawing of structure to file with annotation */
    00020 int PS_rna_plot_snoop_a(char *string,
    00021                         char *structure,
    00022                         char *ssfile,
    00023                         int *relative_access,
    00024                         const char *seqs[]);
    00025
    00038 int PS_rna_plot(char *string,
    00039                 char *structure,
    00040                 char *file);
    00041
    00060 int PS_rna_plot_a(char *string,
    00061                   char *structure,
    00062                   char *file,
    00063                   char *pre,
    00064                   char *post);
    00065
    00066 int PS_rna_plot_a_gquad(char *string,
    00067                         char *structure,
    00068                         char *ssfile,
    00069                         char *pre,
    00070                         char *post);
    00071
    00084 int gmlRNA( char *string,
    00085             char *structure,
    00086             char *ssfile,
    00087             char option);
    00088
    00099 int ssv_rna_plot( char *string,
    00100                   char *structure,
    00101                   char *ssfile);
    00102
    00111 int svg_rna_plot( char *string,
    00112                   char *structure,
    00113                   char *ssfile);
    00114
    00123 int xrna_plot(char *string,
    00124               char *structure,
    00125               char *ssfile);
    00126
    00127 int PS_color_dot_plot(char *string,
    00128                       cpair *pi,
    00129                       char *filename);
    00130
    00131 int PS_color_dot_plot_turn( char *seq,
    00132                             cpair *pi,
    00133                             char *filename,
    00134                             int winSize);
    00135
    00155 int PS_dot_plot_list( char *seq,
    00156                       char *filename,
    00157                       plist *pl,
    00158                       plist *mf,
    00159                       char *comment);
    00160
    00161 int PS_dot_plot_turn( char *seq,
    00162                       struct plist *pl,
    00163                       char *filename,
    00164                       int winSize);
    00165
    00166 int PS_color_aln( const char *structure,
    00167                   const char *filename,
    00168                   const char *seqs[],
    00169                   const char *names[]);
    00170
    00174 int aliPS_color_aln(const char *structure,
    00175                     const char *filename,
    00176                     const char *seqs[],
    00177                     const char *names[]);
    00178
    00179
    00195 DEPRECATED(int PS_dot_plot( char *string,
    00196                             char *file));
    00197 #endif