\hypertarget{group__energy__parameters__convert}{
\section{Converting energy parameter files}
\label{group__energy__parameters__convert}\index{Converting energy parameter files@{Converting energy parameter files}}
}


Convert energy parameter files into the latest format.  


Collaboration diagram for Converting energy parameter files:\nopagebreak
\begin{figure}[H]
\begin{center}
\leavevmode
\includegraphics[width=248pt]{group__energy__parameters__convert}
\end{center}
\end{figure}
\subsection*{Files}
\begin{DoxyCompactItemize}
\item 
file \hyperlink{convert__epars_8h}{convert\_\-epars.h}


\begin{DoxyCompactList}\small\item\em Functions and definitions for energy parameter file format conversion. \item\end{DoxyCompactList}\end{DoxyCompactItemize}
\subsection*{Defines}
\begin{DoxyCompactItemize}
\item 
\#define \hyperlink{group__energy__parameters__convert_ga8dc6aee5a806c49b71557152f9616bc4}{VRNA\_\-CONVERT\_\-OUTPUT\_\-ALL}~1U
\item 
\#define \hyperlink{group__energy__parameters__convert_gaf66fe2cb11dfcfd32d791049c254a8a4}{VRNA\_\-CONVERT\_\-OUTPUT\_\-HP}~2U
\item 
\#define \hyperlink{group__energy__parameters__convert_gad23522d63f8d4c50d5a5deee9bee3ef2}{VRNA\_\-CONVERT\_\-OUTPUT\_\-STACK}~4U
\item 
\#define \hyperlink{group__energy__parameters__convert_gaa892c7b4957459090f3e08da298cc347}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-HP}~8U
\item 
\#define \hyperlink{group__energy__parameters__convert_ga4ff223fb1f9c62cd92d9ab811ad03d55}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT}~16U
\item 
\#define \hyperlink{group__energy__parameters__convert_gaf5d3743219f83c6348155cd81e755bbb}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-1N}~32U
\item 
\#define \hyperlink{group__energy__parameters__convert_ga78382ec622ba99e0ac2262317bdd7316}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-23}~64U
\item 
\#define \hyperlink{group__energy__parameters__convert_gae67af9f1cdf7baf2865481282a5d1034}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-MULTI}~128U
\item 
\#define \hyperlink{group__energy__parameters__convert_gaf14ead7ef1fdbe725ade653750fc51e3}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-EXT}~256U
\item 
\#define \hyperlink{group__energy__parameters__convert_ga036ffd996d8c8a9acf631760dd1da24b}{VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE5}~512U
\item 
\#define \hyperlink{group__energy__parameters__convert_ga34a8a5479ef885834ef32f3fb43d79bc}{VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE3}~1024U
\item 
\#define \hyperlink{group__energy__parameters__convert_ga079aafefd5f8ab57ee5120099a34bd25}{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-11}~2048U
\item 
\#define \hyperlink{group__energy__parameters__convert_gacf770881d9034431ebe741642342a1f9}{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-21}~4096U
\item 
\#define \hyperlink{group__energy__parameters__convert_gaa307671e2631cdacad9cbe4c6583b05f}{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-22}~8192U
\item 
\#define \hyperlink{group__energy__parameters__convert_ga7092fe0be4de6f02cc0bf08e81af726a}{VRNA\_\-CONVERT\_\-OUTPUT\_\-BULGE}~16384U
\item 
\#define \hyperlink{group__energy__parameters__convert_gac5c2289fdf8ff1b980976d1613ff943a}{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT}~32768U
\item 
\#define \hyperlink{group__energy__parameters__convert_gaf2c8755d64eff3852aa45df9ac80a4fe}{VRNA\_\-CONVERT\_\-OUTPUT\_\-ML}~65536U
\item 
\#define \hyperlink{group__energy__parameters__convert_ga46d5b1535ae86060b6317565b7c6b40b}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MISC}~131072U
\item 
\#define \hyperlink{group__energy__parameters__convert_gaa1ff48a79642d69579d1766561ec6db6}{VRNA\_\-CONVERT\_\-OUTPUT\_\-SPECIAL\_\-HP}~262144U
\item 
\#define \hyperlink{group__energy__parameters__convert_ga0d4e8a836bb4864ab5129c085dbf592d}{VRNA\_\-CONVERT\_\-OUTPUT\_\-VANILLA}~524288U
\item 
\#define \hyperlink{group__energy__parameters__convert_ga2eb0462f16939ddacdaf751a88d675ce}{VRNA\_\-CONVERT\_\-OUTPUT\_\-NINIO}~1048576U
\item 
\#define \hyperlink{group__energy__parameters__convert_gac86976e9c2a55b3a6481ea60044f6098}{VRNA\_\-CONVERT\_\-OUTPUT\_\-DUMP}~2097152U
\end{DoxyCompactItemize}
\subsection*{Functions}
\begin{DoxyCompactItemize}
\item 
void \hyperlink{group__energy__parameters__convert_gafbe538bc4eb2cf2a33326e1010005f8a}{convert\_\-parameter\_\-file} (const char $\ast$iname, const char $\ast$oname, unsigned int options)
\end{DoxyCompactItemize}


\subsection{Detailed Description}
Convert energy parameter files into the latest format. To preserve some backward compatibility the RNAlib also provides functions to convert energy parameter files from the format used in version 1.4-\/1.8 into the new format used since version 2.0 

\subsection{Define Documentation}
\hypertarget{group__energy__parameters__convert_ga8dc6aee5a806c49b71557152f9616bc4}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-ALL@{VRNA\_\-CONVERT\_\-OUTPUT\_\-ALL}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-ALL@{VRNA\_\-CONVERT\_\-OUTPUT\_\-ALL}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-ALL}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-ALL~1U}}
\label{group__energy__parameters__convert_ga8dc6aee5a806c49b71557152f9616bc4}
Flag to indicate printing of a complete parameter set \hypertarget{group__energy__parameters__convert_gaf66fe2cb11dfcfd32d791049c254a8a4}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-HP@{VRNA\_\-CONVERT\_\-OUTPUT\_\-HP}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-HP@{VRNA\_\-CONVERT\_\-OUTPUT\_\-HP}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-HP}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-HP~2U}}
\label{group__energy__parameters__convert_gaf66fe2cb11dfcfd32d791049c254a8a4}
Flag to indicate printing of hairpin contributions \hypertarget{group__energy__parameters__convert_gad23522d63f8d4c50d5a5deee9bee3ef2}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-STACK@{VRNA\_\-CONVERT\_\-OUTPUT\_\-STACK}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-STACK@{VRNA\_\-CONVERT\_\-OUTPUT\_\-STACK}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-STACK}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-STACK~4U}}
\label{group__energy__parameters__convert_gad23522d63f8d4c50d5a5deee9bee3ef2}
Flag to indicate printing of base pair stack contributions \hypertarget{group__energy__parameters__convert_gaa892c7b4957459090f3e08da298cc347}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-HP@{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-HP}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-HP@{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-HP}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-HP}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-HP~8U}}
\label{group__energy__parameters__convert_gaa892c7b4957459090f3e08da298cc347}
Flag to indicate printing of hairpin mismatch contribution \hypertarget{group__energy__parameters__convert_ga4ff223fb1f9c62cd92d9ab811ad03d55}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT@{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT@{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT~16U}}
\label{group__energy__parameters__convert_ga4ff223fb1f9c62cd92d9ab811ad03d55}
Flag to indicate printing of interior loop mismatch contribution \hypertarget{group__energy__parameters__convert_gaf5d3743219f83c6348155cd81e755bbb}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-1N@{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-1N}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-1N@{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-1N}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-1N}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-1N~32U}}
\label{group__energy__parameters__convert_gaf5d3743219f83c6348155cd81e755bbb}
Flag to indicate printing of 1:n interior loop mismatch contribution \hypertarget{group__energy__parameters__convert_ga78382ec622ba99e0ac2262317bdd7316}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-23@{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-23}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-23@{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-23}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-23}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-23~64U}}
\label{group__energy__parameters__convert_ga78382ec622ba99e0ac2262317bdd7316}
Flag to indicate printing of 2:3 interior loop mismatch contribution \hypertarget{group__energy__parameters__convert_gae67af9f1cdf7baf2865481282a5d1034}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-MULTI@{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-MULTI}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-MULTI@{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-MULTI}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-MULTI}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-MULTI~128U}}
\label{group__energy__parameters__convert_gae67af9f1cdf7baf2865481282a5d1034}
Flag to indicate printing of multi loop mismatch contribution \hypertarget{group__energy__parameters__convert_gaf14ead7ef1fdbe725ade653750fc51e3}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-EXT@{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-EXT}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-EXT@{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-EXT}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-EXT}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-EXT~256U}}
\label{group__energy__parameters__convert_gaf14ead7ef1fdbe725ade653750fc51e3}
Flag to indicate printing of exterior loop mismatch contribution \hypertarget{group__energy__parameters__convert_ga036ffd996d8c8a9acf631760dd1da24b}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE5@{VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE5}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE5@{VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE5}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE5}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE5~512U}}
\label{group__energy__parameters__convert_ga036ffd996d8c8a9acf631760dd1da24b}
Flag to indicate printing of 5' dangle conctribution \hypertarget{group__energy__parameters__convert_ga34a8a5479ef885834ef32f3fb43d79bc}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE3@{VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE3}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE3@{VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE3}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE3}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE3~1024U}}
\label{group__energy__parameters__convert_ga34a8a5479ef885834ef32f3fb43d79bc}
Flag to indicate printing of 3' dangle contribution \hypertarget{group__energy__parameters__convert_ga079aafefd5f8ab57ee5120099a34bd25}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-11@{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-11}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-11@{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-11}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-11}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-11~2048U}}
\label{group__energy__parameters__convert_ga079aafefd5f8ab57ee5120099a34bd25}
Flag to indicate printing of 1:1 interior loop contribution \hypertarget{group__energy__parameters__convert_gacf770881d9034431ebe741642342a1f9}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-21@{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-21}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-21@{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-21}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-21}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-21~4096U}}
\label{group__energy__parameters__convert_gacf770881d9034431ebe741642342a1f9}
Flag to indicate printing of 2:1 interior loop contribution \hypertarget{group__energy__parameters__convert_gaa307671e2631cdacad9cbe4c6583b05f}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-22@{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-22}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-22@{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-22}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-22}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-22~8192U}}
\label{group__energy__parameters__convert_gaa307671e2631cdacad9cbe4c6583b05f}
Flag to indicate printing of 2:2 interior loop contribution \hypertarget{group__energy__parameters__convert_ga7092fe0be4de6f02cc0bf08e81af726a}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-BULGE@{VRNA\_\-CONVERT\_\-OUTPUT\_\-BULGE}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-BULGE@{VRNA\_\-CONVERT\_\-OUTPUT\_\-BULGE}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-BULGE}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-BULGE~16384U}}
\label{group__energy__parameters__convert_ga7092fe0be4de6f02cc0bf08e81af726a}
Flag to indicate printing of bulge loop contribution \hypertarget{group__energy__parameters__convert_gac5c2289fdf8ff1b980976d1613ff943a}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-INT@{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT@{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-INT~32768U}}
\label{group__energy__parameters__convert_gac5c2289fdf8ff1b980976d1613ff943a}
Flag to indicate printing of interior loop contribution \hypertarget{group__energy__parameters__convert_gaf2c8755d64eff3852aa45df9ac80a4fe}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-ML@{VRNA\_\-CONVERT\_\-OUTPUT\_\-ML}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-ML@{VRNA\_\-CONVERT\_\-OUTPUT\_\-ML}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-ML}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-ML~65536U}}
\label{group__energy__parameters__convert_gaf2c8755d64eff3852aa45df9ac80a4fe}
Flag to indicate printing of multi loop contribution \hypertarget{group__energy__parameters__convert_ga46d5b1535ae86060b6317565b7c6b40b}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-MISC@{VRNA\_\-CONVERT\_\-OUTPUT\_\-MISC}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-MISC@{VRNA\_\-CONVERT\_\-OUTPUT\_\-MISC}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-MISC}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-MISC~131072U}}
\label{group__energy__parameters__convert_ga46d5b1535ae86060b6317565b7c6b40b}
Flag to indicate printing of misc contributions (such as terminalAU) \hypertarget{group__energy__parameters__convert_gaa1ff48a79642d69579d1766561ec6db6}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-SPECIAL\_\-HP@{VRNA\_\-CONVERT\_\-OUTPUT\_\-SPECIAL\_\-HP}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-SPECIAL\_\-HP@{VRNA\_\-CONVERT\_\-OUTPUT\_\-SPECIAL\_\-HP}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-SPECIAL\_\-HP}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-SPECIAL\_\-HP~262144U}}
\label{group__energy__parameters__convert_gaa1ff48a79642d69579d1766561ec6db6}
Flag to indicate printing of special hairpin contributions (tri-\/, tetra-\/, hexa-\/loops) \hypertarget{group__energy__parameters__convert_ga0d4e8a836bb4864ab5129c085dbf592d}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-VANILLA@{VRNA\_\-CONVERT\_\-OUTPUT\_\-VANILLA}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-VANILLA@{VRNA\_\-CONVERT\_\-OUTPUT\_\-VANILLA}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-VANILLA}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-VANILLA~524288U}}
\label{group__energy__parameters__convert_ga0d4e8a836bb4864ab5129c085dbf592d}
Flag to indicate printing of given parameters only\par
\begin{DoxyNote}{Note}
This option overrides all other output options, except \hyperlink{group__energy__parameters__convert_gac86976e9c2a55b3a6481ea60044f6098}{VRNA\_\-CONVERT\_\-OUTPUT\_\-DUMP} ! 
\end{DoxyNote}
\hypertarget{group__energy__parameters__convert_ga2eb0462f16939ddacdaf751a88d675ce}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-NINIO@{VRNA\_\-CONVERT\_\-OUTPUT\_\-NINIO}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-NINIO@{VRNA\_\-CONVERT\_\-OUTPUT\_\-NINIO}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-NINIO}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-NINIO~1048576U}}
\label{group__energy__parameters__convert_ga2eb0462f16939ddacdaf751a88d675ce}
Flag to indicate printing of interior loop asymmetry contribution \hypertarget{group__energy__parameters__convert_gac86976e9c2a55b3a6481ea60044f6098}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!VRNA\_\-CONVERT\_\-OUTPUT\_\-DUMP@{VRNA\_\-CONVERT\_\-OUTPUT\_\-DUMP}}
\index{VRNA\_\-CONVERT\_\-OUTPUT\_\-DUMP@{VRNA\_\-CONVERT\_\-OUTPUT\_\-DUMP}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{VRNA\_\-CONVERT\_\-OUTPUT\_\-DUMP}]{\setlength{\rightskip}{0pt plus 5cm}\#define VRNA\_\-CONVERT\_\-OUTPUT\_\-DUMP~2097152U}}
\label{group__energy__parameters__convert_gac86976e9c2a55b3a6481ea60044f6098}
Flag to indicate dumping the energy contributions from the library instead of an input file 

\subsection{Function Documentation}
\hypertarget{group__energy__parameters__convert_gafbe538bc4eb2cf2a33326e1010005f8a}{
\index{energy\_\-parameters\_\-convert@{energy\_\-parameters\_\-convert}!convert\_\-parameter\_\-file@{convert\_\-parameter\_\-file}}
\index{convert\_\-parameter\_\-file@{convert\_\-parameter\_\-file}!energy_parameters_convert@{energy\_\-parameters\_\-convert}}
\subsubsection[{convert\_\-parameter\_\-file}]{\setlength{\rightskip}{0pt plus 5cm}void convert\_\-parameter\_\-file (const char $\ast$ {\em iname}, \/  const char $\ast$ {\em oname}, \/  unsigned int {\em options})}}
\label{group__energy__parameters__convert_gafbe538bc4eb2cf2a33326e1010005f8a}
Convert/dump a Vienna 1.8.4 formatted energy parameter file

The options argument allows to control the different output modes.\par
 Currently available options are:\par
 \hyperlink{group__energy__parameters__convert_ga8dc6aee5a806c49b71557152f9616bc4}{VRNA\_\-CONVERT\_\-OUTPUT\_\-ALL}, \hyperlink{group__energy__parameters__convert_gaf66fe2cb11dfcfd32d791049c254a8a4}{VRNA\_\-CONVERT\_\-OUTPUT\_\-HP}, \hyperlink{group__energy__parameters__convert_gad23522d63f8d4c50d5a5deee9bee3ef2}{VRNA\_\-CONVERT\_\-OUTPUT\_\-STACK}\par
 \hyperlink{group__energy__parameters__convert_gaa892c7b4957459090f3e08da298cc347}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-HP}, \hyperlink{group__energy__parameters__convert_ga4ff223fb1f9c62cd92d9ab811ad03d55}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT}, \hyperlink{group__energy__parameters__convert_gaf5d3743219f83c6348155cd81e755bbb}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-1N}\par
 \hyperlink{group__energy__parameters__convert_ga78382ec622ba99e0ac2262317bdd7316}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-23}, \hyperlink{group__energy__parameters__convert_gae67af9f1cdf7baf2865481282a5d1034}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-MULTI}, \hyperlink{group__energy__parameters__convert_gaf14ead7ef1fdbe725ade653750fc51e3}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-EXT}\par
 \hyperlink{group__energy__parameters__convert_ga036ffd996d8c8a9acf631760dd1da24b}{VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE5}, \hyperlink{group__energy__parameters__convert_ga34a8a5479ef885834ef32f3fb43d79bc}{VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE3}, \hyperlink{group__energy__parameters__convert_ga079aafefd5f8ab57ee5120099a34bd25}{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-11}\par
 \hyperlink{group__energy__parameters__convert_gacf770881d9034431ebe741642342a1f9}{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-21}, \hyperlink{group__energy__parameters__convert_gaa307671e2631cdacad9cbe4c6583b05f}{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-22}, \hyperlink{group__energy__parameters__convert_ga7092fe0be4de6f02cc0bf08e81af726a}{VRNA\_\-CONVERT\_\-OUTPUT\_\-BULGE}\par
 \hyperlink{group__energy__parameters__convert_gac5c2289fdf8ff1b980976d1613ff943a}{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT}, \hyperlink{group__energy__parameters__convert_gaf2c8755d64eff3852aa45df9ac80a4fe}{VRNA\_\-CONVERT\_\-OUTPUT\_\-ML}, \hyperlink{group__energy__parameters__convert_ga46d5b1535ae86060b6317565b7c6b40b}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MISC}\par
 \hyperlink{group__energy__parameters__convert_gaa1ff48a79642d69579d1766561ec6db6}{VRNA\_\-CONVERT\_\-OUTPUT\_\-SPECIAL\_\-HP}, \hyperlink{group__energy__parameters__convert_ga0d4e8a836bb4864ab5129c085dbf592d}{VRNA\_\-CONVERT\_\-OUTPUT\_\-VANILLA}, \hyperlink{group__energy__parameters__convert_ga2eb0462f16939ddacdaf751a88d675ce}{VRNA\_\-CONVERT\_\-OUTPUT\_\-NINIO}\par
 \hyperlink{group__energy__parameters__convert_gac86976e9c2a55b3a6481ea60044f6098}{VRNA\_\-CONVERT\_\-OUTPUT\_\-DUMP}

The defined options are fine for bitwise compare-\/ and assignment-\/operations, e. g.: pass a collection of options as a single value like this: \begin{DoxyVerb}convert_parameter_file(ifile, ofile, option_1 | option_2 | option_n) \end{DoxyVerb}



\begin{DoxyParams}{Parameters}
\item[{\em iname}]The input file name (If NULL input is read from stdin) \item[{\em oname}]The output file name (If NULL output is written to stdout) \item[{\em options}]The options (as described above) \end{DoxyParams}
