- Main Page
- Related Pages
- Modules
- Data Structures
- Files

- File List
- Globals

# /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/energy_const.h

Go to the documentation of this file.

    00001 #ifndef __VIENNA_RNA_PACKAGE_ENERGY_CONST_H__
    00002 #define __VIENNA_RNA_PACKAGE_ENERGY_CONST_H__
    00003
    00004 #include <limits.h>
    00005
    00012 #define GASCONST 1.98717  /* in [cal/K] */
    00013
    00014 #define K0  273.15
    00015
    00016 #define INF 10000000 /* (INT_MAX/10) */
    00017
    00018 #define EMAX (INF/10)
    00019
    00020 #define FORBIDDEN 9999
    00021
    00022 #define BONUS 10000
    00023
    00024 #define NBPAIRS 7
    00025
    00026 #define TURN 3
    00027
    00028 #define MAXLOOP 30
    00029
    00030 #define   VRNA_GQUAD_MISMATCH_PENALTY   300   /* penalty for incompatible nucleotides in an alignment that destruct a gquad layer */
    00031 #define   VRNA_GQUAD_MISMATCH_NUM_ALI   1   /* maximum number of mismatching sequences in the alignment when gquad should be formed */
    00032
    00033 #endif