\hypertarget{params_8h_source}{
\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/params.h}
}


\begin{footnotesize}\begin{alltt}
00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_PARAMS\_H\_\_}
00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_PARAMS\_H\_\_}
00003 \textcolor{preprocessor}{}
00004 \textcolor{preprocessor}{#include "\hyperlink{energy__const_8h}{energy_const.h}"}
00005 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data_structures.h}"}
00006 
00007 \textcolor{preprocessor}{#ifdef \_\_GNUC\_\_}
00008 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func \_\_attribute\_\_ ((deprecated))}
00009 \textcolor{preprocessor}{}\textcolor{preprocessor}{#else}
00010 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func}
00011 \textcolor{preprocessor}{}\textcolor{preprocessor}{#endif}
00012 \textcolor{preprocessor}{}
00036 \hyperlink{structparamT}{paramT} *\hyperlink{group__energy__parameters_ga527ef619cd8210b84d5d53be1e0e29b6}{scale_parameters}(\textcolor{keywordtype}{void});
00037 
00052 \hyperlink{structparamT}{paramT} *\hyperlink{group__energy__parameters_gac2f3ca440b7eaf4d999fb27da949fe72}{get_scaled_parameters}(\textcolor{keywordtype}{double} temperature,
00053                               \hyperlink{structmodel__detailsT}{model_detailsT} md);
00054 
00055 \hyperlink{structparamT}{paramT} *get\_parameter\_copy(\hyperlink{structparamT}{paramT} *par);
00056 
00063 \hyperlink{structpf__paramT}{pf_paramT} *\hyperlink{group__energy__parameters_gab85f6b6da051f380371deb0d8921bdba}{get_scaled_pf_parameters}(\textcolor{keywordtype}{void});
00064 
00088 \hyperlink{structpf__paramT}{pf_paramT} *\hyperlink{group__energy__parameters_ga6fc2f3eef5a3024d44963ac59a42e39d}{get_boltzmann_factors}( \textcolor{keywordtype}{double} temperature,
00089                                   \textcolor{keywordtype}{double} betaScale,
00090                                   \hyperlink{structmodel__detailsT}{model_detailsT} md,
00091                                   \textcolor{keywordtype}{double} pf\_scale);
00092 
00101 \hyperlink{structpf__paramT}{pf_paramT} *\hyperlink{group__energy__parameters_gacba212326a051734797e65987260fdd0}{get_boltzmann_factor_copy}(\hyperlink{structpf__paramT}{pf_paramT} *parameters);
00102 
00108 \hyperlink{structpf__paramT}{pf_paramT} *\hyperlink{group__energy__parameters_gaa6a4297a2b91d6f7ae47dd61ca1862a0}{get_scaled_alipf_parameters}(\textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} n\_seq);
00109 
00116 PUBLIC \hyperlink{structpf__paramT}{pf_paramT} *\hyperlink{group__energy__parameters_gaf0c74574b40f2778556535bf9d382828}{get_boltzmann_factors_ali}(\textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} n\_seq,
00117                                             \textcolor{keywordtype}{double} temperature,
00118                                             \textcolor{keywordtype}{double} betaScale,
00119                                             \hyperlink{structmodel__detailsT}{model_detailsT} md,
00120                                             \textcolor{keywordtype}{double} pf\_scale);
00121 
00126 DEPRECATED(\hyperlink{structparamT}{paramT}     *copy\_parameters(\textcolor{keywordtype}{void}));
00127 DEPRECATED(\hyperlink{structparamT}{paramT}     *set\_parameters(\hyperlink{structparamT}{paramT} *dest));
00128 DEPRECATED(\hyperlink{structpf__paramT}{pf_paramT}  *scale\_pf\_parameters(\textcolor{keywordtype}{void}));
00129 DEPRECATED(\hyperlink{structpf__paramT}{pf_paramT}  *copy\_pf\_param(\textcolor{keywordtype}{void}));
00130 DEPRECATED(\hyperlink{structpf__paramT}{pf_paramT}  *set\_pf\_param(\hyperlink{structparamT}{paramT} *dest));
00131 
00132 
00133 
00134 \textcolor{preprocessor}{#endif}
\end{alltt}\end{footnotesize}
