\hypertarget{part__func__up_8h_source}{
\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/part\_\-func\_\-up.h}
}


\begin{footnotesize}\begin{alltt}
00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_PART\_FUNC\_UP\_H\_\_}
00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_PART\_FUNC\_UP\_H\_\_}
00003 \textcolor{preprocessor}{}
00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data_structures.h}"}
00005 
00006 \textcolor{preprocessor}{#define   RNA\_UP\_MODE\_1   1U}
00007 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define   RNA\_UP\_MODE\_2   2U}
00008 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define   RNA\_UP\_MODE\_3   4U}
00009 \textcolor{preprocessor}{}
00055 \hyperlink{structpu__contrib}{pu_contrib} *\hyperlink{group__up__cofold_ga5b4ee40e190d2f633cd01cf0d2fe93cf}{pf_unstru}(\textcolor{keywordtype}{char} *sequence,
00056                       \textcolor{keywordtype}{int} max\_w);
00057 
00100 \hyperlink{structinteract}{interact} *\hyperlink{group__up__cofold_ga1aa0aa02bc3a724f87360c03097afd00}{pf_interact}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *s1,
00101                       \textcolor{keyword}{const} \textcolor{keywordtype}{char} *s2,
00102                       \hyperlink{structpu__contrib}{pu_contrib} *p\_c,
00103                       \hyperlink{structpu__contrib}{pu_contrib} *p\_c2,
00104                       \textcolor{keywordtype}{int} max\_w,
00105                       \textcolor{keywordtype}{char} *cstruc,
00106                       \textcolor{keywordtype}{int} incr3,
00107                       \textcolor{keywordtype}{int} incr5);
00108 
00112 \textcolor{keywordtype}{void} \hyperlink{group__up__cofold_gadde308fd5f696dc271b1532aa96fd12f}{free_interact}(\hyperlink{structinteract}{interact} *pin);
00113 
00117 \textcolor{keywordtype}{int} Up\_plot(\hyperlink{structpu__contrib}{pu_contrib} *p\_c,
00118             \hyperlink{structpu__contrib}{pu_contrib} *p\_c\_sh,
00119             \hyperlink{structinteract}{interact} *pint,
00120             \textcolor{keywordtype}{char} *ofile,
00121             \textcolor{keywordtype}{int} **unpaired\_values,
00122             \textcolor{keywordtype}{char} *select\_contrib,
00123             \textcolor{keywordtype}{char} *head,
00124             \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} mode);
00125 
00129 \hyperlink{structpu__contrib}{pu_contrib}  *get\_pu\_contrib\_struct( \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} n,
00130                                     \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} w);
00131 
00135 \textcolor{keywordtype}{void}        \hyperlink{group__up__cofold_gac20bd61824981d45ce0dc9934aa56df8}{free_pu_contrib_struct}(\hyperlink{structpu__contrib}{pu_contrib} *pu);
00136 
00141 \textcolor{preprocessor}{#endif}
\end{alltt}\end{footnotesize}
