\hypertarget{LPfold_8h}{
\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/LPfold.h File Reference}
\label{LPfold_8h}\index{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/LPfold.h@{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/LPfold.h}}
}


Function declarations of partition function variants of the Lfold algorithm.  
Include dependency graph for LPfold.h:\nopagebreak
\begin{figure}[H]
\begin{center}
\leavevmode
\includegraphics[width=209pt]{LPfold_8h__incl}
\end{center}
\end{figure}
\subsection*{Functions}
\begin{DoxyCompactItemize}
\item 
void \hyperlink{group__local__pf__fold_ga5a019014d37fe6105131dfc2fc447880}{update\_\-pf\_\-paramsLP} (int length)
\item 
\hyperlink{structplist}{plist} $\ast$ \hyperlink{group__local__pf__fold_gaa1ecd401617ebc748a0220026543c777}{pfl\_\-fold} (char $\ast$sequence, int winSize, int pairSize, float cutoffb, double $\ast$$\ast$pU, struct \hyperlink{structplist}{plist} $\ast$$\ast$dpp2, FILE $\ast$pUfp, FILE $\ast$spup)
\begin{DoxyCompactList}\small\item\em Compute partition functions for locally stable secondary structures. \item\end{DoxyCompactList}\item 
\hypertarget{group__local__pf__fold_gab354507e8028f3e1c52ef96bb1eb9df8}{
\hyperlink{structplist}{plist} $\ast$ \hyperlink{group__local__pf__fold_gab354507e8028f3e1c52ef96bb1eb9df8}{pfl\_\-fold\_\-par} (char $\ast$sequence, int winSize, int pairSize, float cutoffb, double $\ast$$\ast$pU, struct \hyperlink{structplist}{plist} $\ast$$\ast$dpp2, FILE $\ast$pUfp, FILE $\ast$spup, \hyperlink{structpf__paramT}{pf\_\-paramT} $\ast$parameters)}
\label{group__local__pf__fold_gab354507e8028f3e1c52ef96bb1eb9df8}

\begin{DoxyCompactList}\small\item\em Compute partition functions for locally stable secondary structures. \item\end{DoxyCompactList}\item 
void \hyperlink{group__local__pf__fold_ga0bcb751860bbf34e3dfee8c2fbdb3ef3}{putoutpU\_\-prob} (double $\ast$$\ast$pU, int length, int ulength, FILE $\ast$fp, int energies)
\begin{DoxyCompactList}\small\item\em Writes the unpaired probabilities (pU) or opening energies into a file. \item\end{DoxyCompactList}\item 
void \hyperlink{group__local__pf__fold_ga9acb00ee10e96b1ca4ea394cd8bcec75}{putoutpU\_\-prob\_\-bin} (double $\ast$$\ast$pU, int length, int ulength, FILE $\ast$fp, int energies)
\begin{DoxyCompactList}\small\item\em Writes the unpaired probabilities (pU) or opening energies into a binary file. \item\end{DoxyCompactList}\item 
void \hyperlink{LPfold_8h_ae85bf55053e9fb295208be322e0fa07a}{init\_\-pf\_\-foldLP} (int length)
\end{DoxyCompactItemize}


\subsection{Detailed Description}
Function declarations of partition function variants of the Lfold algorithm. 

\subsection{Function Documentation}
\hypertarget{LPfold_8h_ae85bf55053e9fb295208be322e0fa07a}{
\index{LPfold.h@{LPfold.h}!init\_\-pf\_\-foldLP@{init\_\-pf\_\-foldLP}}
\index{init\_\-pf\_\-foldLP@{init\_\-pf\_\-foldLP}!LPfold.h@{LPfold.h}}
\subsubsection[{init\_\-pf\_\-foldLP}]{\setlength{\rightskip}{0pt plus 5cm}void init\_\-pf\_\-foldLP (int {\em length})}}
\label{LPfold_8h_ae85bf55053e9fb295208be322e0fa07a}
Dunno if this function was ever used by external programs linking to RNAlib, but it was declared PUBLIC before. Anyway, never use this function as it will be removed soon and does nothing at all 