\hypertarget{duplex_8h_source}{
\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/duplex.h}
}


\begin{footnotesize}\begin{alltt}
00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_DUPLEX\_H\_\_}
00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_DUPLEX\_H\_\_}
00003 \textcolor{preprocessor}{}
00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data_structures.h}"}
00005 
00012 \hyperlink{structduplexT}{duplexT} duplexfold( \textcolor{keyword}{const} \textcolor{keywordtype}{char} *s1,
00013                     \textcolor{keyword}{const} \textcolor{keywordtype}{char} *s2);
00014 
00015 \hyperlink{structduplexT}{duplexT} *duplex\_subopt( \textcolor{keyword}{const} \textcolor{keywordtype}{char} *s1,
00016                         \textcolor{keyword}{const} \textcolor{keywordtype}{char} *s2,
00017                         \textcolor{keywordtype}{int} delta,
00018                         \textcolor{keywordtype}{int} w);
00019 
00020 \hyperlink{structduplexT}{duplexT} aliduplexfold(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *s1[],
00021                       \textcolor{keyword}{const} \textcolor{keywordtype}{char} *s2[]);
00022 
00023 \hyperlink{structduplexT}{duplexT} *aliduplex\_subopt(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *s1[],
00024                           \textcolor{keyword}{const} \textcolor{keywordtype}{char} *s2[],
00025                           \textcolor{keywordtype}{int} delta,
00026                           \textcolor{keywordtype}{int} w);
00027 
00028 \textcolor{preprocessor}{#endif}
\end{alltt}\end{footnotesize}
