# Predicting Locally stable structures of large sequences
[RNA Secondary Structure Folding]

Collaboration diagram for Predicting Locally stable structures of large sequences:

## Modules
| Local MFE structure Prediction and Z-scores
| Partition functions for locally stable secondary structures
| Local MFE consensus structures for Sequence Alignments

## Detailed Description

Local structures can be predicted by a modified version of the fold() algorithm that restricts the span of all base pairs.