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# /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/duplex.h

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    00001 #ifndef __VIENNA_RNA_PACKAGE_DUPLEX_H__
    00002 #define __VIENNA_RNA_PACKAGE_DUPLEX_H__
    00003
    00004 #include "data_structures.h"
    00005
    00012 duplexT duplexfold( const char *s1,
    00013                     const char *s2);
    00014
    00015 duplexT *duplex_subopt( const char *s1,
    00016                         const char *s2,
    00017                         int delta,
    00018                         int w);
    00019
    00020 duplexT aliduplexfold(const char *s1[],
    00021                       const char *s2[]);
    00022
    00023 duplexT *aliduplex_subopt(const char *s1[],
    00024                           const char *s2[],
    00025                           int delta,
    00026                           int w);
    00027
    00028 #endif