\hypertarget{part__func__co_8h_source}{
\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/part\_\-func\_\-co.h}
}


\begin{footnotesize}\begin{alltt}
00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_PART\_FUNC\_CO\_H\_\_}
00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_PART\_FUNC\_CO\_H\_\_}
00003 \textcolor{preprocessor}{}
00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data_structures.h}"}
00005 
00006 \textcolor{preprocessor}{#ifdef \_\_GNUC\_\_}
00007 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func \_\_attribute\_\_ ((deprecated))}
00008 \textcolor{preprocessor}{}\textcolor{preprocessor}{#else}
00009 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func}
00010 \textcolor{preprocessor}{}\textcolor{preprocessor}{#endif}
00011 \textcolor{preprocessor}{}
00055 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{group__pf__cofold_gaff27888c4088cc1f60fd59cbd589474c}{mirnatog};
00056 
00060 \textcolor{keyword}{extern} \textcolor{keywordtype}{double} \hyperlink{group__pf__cofold_gac2d1851a710a8561390861155ca988fe}{F_monomer}[2];
00061 
00080 \hyperlink{structcofoldF}{cofoldF} \hyperlink{group__pf__cofold_gaa86a5f998789ed71813d23d7307a791b}{co_pf_fold}( \textcolor{keywordtype}{char} *sequence,
00081                     \textcolor{keywordtype}{char} *structure);
00082 
00100 \hyperlink{structcofoldF}{cofoldF} \hyperlink{group__pf__cofold_gabd873b450832ab5f21101fc5ab354d21}{co_pf_fold_par}( \textcolor{keywordtype}{char} *sequence,
00101                         \textcolor{keywordtype}{char} *structure,
00102                         \hyperlink{structpf__paramT}{pf_paramT} *parameters,
00103                         \textcolor{keywordtype}{int} calculate\_bppm,
00104                         \textcolor{keywordtype}{int} is\_constrained);
00105 
00115 FLT\_OR\_DBL *\hyperlink{group__pf__cofold_ga11f0252c1d2c4697253ff4b5bd392d3c}{export_co_bppm}(\textcolor{keywordtype}{void});
00116 
00120 \textcolor{keywordtype}{void}    \hyperlink{group__pf__cofold_gade3ce34ae8214811374b1d28a40dc247}{free_co_pf_arrays}(\textcolor{keywordtype}{void});
00121 
00136 \textcolor{keywordtype}{void}    \hyperlink{group__pf__cofold_ga6e0f36c1f9b7d9dd4bfbad914c1119e5}{update_co_pf_params}(\textcolor{keywordtype}{int} length);
00137 
00157 \textcolor{keywordtype}{void}    \hyperlink{group__pf__cofold_ga117d880df45bef444d5e2785ffa40a53}{update_co_pf_params_par}(\textcolor{keywordtype}{int} length,
00158                                 \hyperlink{structpf__paramT}{pf_paramT} *parameters);
00159 
00177 \textcolor{keywordtype}{void}    \hyperlink{group__pf__cofold_ga15ae04ac5ab84e876dcf0093120cb617}{compute_probabilities}(\textcolor{keywordtype}{double} FAB,
00178                               \textcolor{keywordtype}{double} FEA,
00179                               \textcolor{keywordtype}{double} FEB,
00180                               \textcolor{keyword}{struct} \hyperlink{structplist}{plist}  *prAB,
00181                               \textcolor{keyword}{struct} \hyperlink{structplist}{plist}  *prA,
00182                               \textcolor{keyword}{struct} \hyperlink{structplist}{plist}  *prB,
00183                               \textcolor{keywordtype}{int} Alength);
00184 
00203 \hyperlink{structConcEnt}{ConcEnt} *\hyperlink{group__pf__cofold_ga5545cb936ac4ff93c7d699d46e72e8c7}{get_concentrations}(\textcolor{keywordtype}{double} FEAB,
00204                             \textcolor{keywordtype}{double} FEAA,
00205                             \textcolor{keywordtype}{double} FEBB,
00206                             \textcolor{keywordtype}{double} FEA,
00207                             \textcolor{keywordtype}{double} FEB,
00208                             \textcolor{keywordtype}{double} *startconc);
00209 
00210 
00215 \textcolor{comment}{/*}
00216 \textcolor{comment}{#################################################}
00217 \textcolor{comment}{# DEPRECATED FUNCTIONS                          #}
00218 \textcolor{comment}{#################################################}
00219 \textcolor{comment}{*/}
00220 
00226 DEPRECATED(\hyperlink{structplist}{plist}  *\hyperlink{part__func__co_8h_a334de3c96e2186abfbdc0eaea6d08b14}{get_plist}( \textcolor{keyword}{struct} \hyperlink{structplist}{plist} *pl,
00227                               \textcolor{keywordtype}{int} length,
00228                               \textcolor{keywordtype}{double} cut\_off));
00233 DEPRECATED(\textcolor{keywordtype}{void}   \hyperlink{part__func__co_8h_aa12dda9dd6179cdd22bcce87c0682c07}{init_co_pf_fold}(\textcolor{keywordtype}{int} length));
00234 
00235 \textcolor{preprocessor}{#endif}
\end{alltt}\end{footnotesize}
