\hypertarget{subopt_8h_source}{
\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/subopt.h}
}


\begin{footnotesize}\begin{alltt}
00001 \textcolor{comment}{/* subopt.h */}
00002 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_SUBOPT\_H\_\_}
00003 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_SUBOPT\_H\_\_}
00004 \textcolor{preprocessor}{}
00005 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data_structures.h}"}
00006 
00007 \textcolor{preprocessor}{#define MAXDOS 1000}
00008 \textcolor{preprocessor}{}
00043 \hyperlink{structSOLUTION}{SOLUTION} *\hyperlink{group__subopt__wuchty_ga700f662506a233e42dd7fda74fafd40e}{subopt} (\textcolor{keywordtype}{char} *seq,
00044                   \textcolor{keywordtype}{char} *structure,
00045                   \textcolor{keywordtype}{int} delta,
00046                   FILE *fp);
00047 
00053 \hyperlink{structSOLUTION}{SOLUTION} *\hyperlink{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}{subopt_par}( \textcolor{keywordtype}{char} *seq,
00054                       \textcolor{keywordtype}{char} *structure,
00055                       \hyperlink{structparamT}{paramT} *parameters,
00056                       \textcolor{keywordtype}{int} delta,
00057                       \textcolor{keywordtype}{int} is\_constrained,
00058                       \textcolor{keywordtype}{int} is\_circular,
00059                       FILE *fp);
00060 
00075 \hyperlink{structSOLUTION}{SOLUTION} *\hyperlink{group__subopt__wuchty_ga8634516e4740e0b6c9a46d2bae940340}{subopt_circ} ( \textcolor{keywordtype}{char} *seq,
00076                         \textcolor{keywordtype}{char} *sequence,
00077                         \textcolor{keywordtype}{int} delta,
00078                         FILE *fp);
00079 
00086 \textcolor{keyword}{extern}  \textcolor{keywordtype}{int}     \hyperlink{group__subopt__wuchty_ga873cf8ed69e0437f8efa8b1fec854a0e}{subopt_sorted};
00087 
00088 
00095 \textcolor{keyword}{extern}  \textcolor{keywordtype}{double}  \hyperlink{group__subopt__wuchty_ga5e57d914bcb5feeecdf520e25313fcfe}{print_energy};
00096 
00113 \textcolor{keyword}{extern}  \textcolor{keywordtype}{int}     \hyperlink{group__dos_ga937634a76b46a22530a74906f1957a9e}{density_of_states}[\hyperlink{data__structures_8h_a5ec740b80afb4906ba4311dbd8ddbd89}{MAXDOS}+1];
00114  \textcolor{comment}{/* End of group dos */}
00116 
00117 \textcolor{preprocessor}{#endif}
\end{alltt}\end{footnotesize}
