\hypertarget{structpair__info}{
\section{pair\_\-info Struct Reference}
\label{structpair__info}\index{pair\_\-info@{pair\_\-info}}
}


A base pair info structure.  
\subsection*{Data Fields}
\begin{DoxyCompactItemize}
\item 
\hypertarget{structpair__info_a7905e17da6a6cc48230ee6205628ed7f}{
unsigned \hyperlink{structpair__info_a7905e17da6a6cc48230ee6205628ed7f}{i}}
\label{structpair__info_a7905e17da6a6cc48230ee6205628ed7f}

\begin{DoxyCompactList}\small\item\em nucleotide position i \item\end{DoxyCompactList}\item 
\hypertarget{structpair__info_a35665817b5792703ff4325e1bcbe5e21}{
unsigned \hyperlink{structpair__info_a35665817b5792703ff4325e1bcbe5e21}{j}}
\label{structpair__info_a35665817b5792703ff4325e1bcbe5e21}

\begin{DoxyCompactList}\small\item\em nucleotide position j \item\end{DoxyCompactList}\item 
\hypertarget{structpair__info_af0895ea40ec0c23bfe8aa2c3babf0e80}{
float \hyperlink{structpair__info_af0895ea40ec0c23bfe8aa2c3babf0e80}{p}}
\label{structpair__info_af0895ea40ec0c23bfe8aa2c3babf0e80}

\begin{DoxyCompactList}\small\item\em Probability. \item\end{DoxyCompactList}\item 
\hypertarget{structpair__info_ab3aa7a54e6976f46e69c6ffcddd0e782}{
float \hyperlink{structpair__info_ab3aa7a54e6976f46e69c6ffcddd0e782}{ent}}
\label{structpair__info_ab3aa7a54e6976f46e69c6ffcddd0e782}

\begin{DoxyCompactList}\small\item\em Pseudo entropy for $ p(i,j) = S_i + S_j - p_ij*ln(p_ij) $. \item\end{DoxyCompactList}\item 
\hypertarget{structpair__info_a23fc316453d179474bed7f6ed2489723}{
short \hyperlink{structpair__info_a23fc316453d179474bed7f6ed2489723}{bp} \mbox{[}8\mbox{]}}
\label{structpair__info_a23fc316453d179474bed7f6ed2489723}

\begin{DoxyCompactList}\small\item\em Frequencies of pair\_\-types. \item\end{DoxyCompactList}\item 
\hypertarget{structpair__info_a4da3d6c9042500c16c4b06e0bbc48190}{
char \hyperlink{structpair__info_a4da3d6c9042500c16c4b06e0bbc48190}{comp}}
\label{structpair__info_a4da3d6c9042500c16c4b06e0bbc48190}

\begin{DoxyCompactList}\small\item\em 1 iff pair is in mfe structure \item\end{DoxyCompactList}\end{DoxyCompactItemize}


\subsection{Detailed Description}
A base pair info structure. For each base pair (i,j) with i,j in \mbox{[}0, n-\/1\mbox{]} the structure lists:
\begin{DoxyItemize}
\item its probability 'p'
\item an entropy-\/like measure for its well-\/definedness 'ent'
\item the frequency of each type of pair in 'bp\mbox{[}\mbox{]}' + 'bp\mbox{[}0\mbox{]}' contains the number of non-\/compatible sequences + 'bp\mbox{[}1\mbox{]}' the number of CG pairs, etc. 
\end{DoxyItemize}

The documentation for this struct was generated from the following file:\begin{DoxyCompactItemize}
\item 
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/\hyperlink{data__structures_8h}{data\_\-structures.h}\end{DoxyCompactItemize}
