\section{Data Structures}
Here are the data structures with brief descriptions:\begin{DoxyCompactList}
\item\contentsline{section}{\hyperlink{structbondT}{bondT} (Base pair )}{\pageref{structbondT}}{}
\item\contentsline{section}{\hyperlink{structbondTEn}{bondTEn} (Base pair with associated energy )}{\pageref{structbondTEn}}{}
\item\contentsline{section}{\hyperlink{structcofoldF}{cofoldF} }{\pageref{structcofoldF}}{}
\item\contentsline{section}{\hyperlink{structConcEnt}{ConcEnt} }{\pageref{structConcEnt}}{}
\item\contentsline{section}{\hyperlink{structconstrain}{constrain} (Constraints for cofolding )}{\pageref{structconstrain}}{}
\item\contentsline{section}{\hyperlink{structCOORDINATE}{COORDINATE} (This is a workarround for the SWIG Perl Wrapper RNA plot function that returns an array of type \hyperlink{structCOORDINATE}{COORDINATE} )}{\pageref{structCOORDINATE}}{}
\item\contentsline{section}{\hyperlink{structcpair}{cpair} (This datastructure is used as input parameter in functions of PS\_\-dot.c )}{\pageref{structcpair}}{}
\item\contentsline{section}{\hyperlink{structduplexT}{duplexT} }{\pageref{structduplexT}}{}
\item\contentsline{section}{\hyperlink{structdupVar}{dupVar} }{\pageref{structdupVar}}{}
\item\contentsline{section}{\hyperlink{structfolden}{folden} }{\pageref{structfolden}}{}
\item\contentsline{section}{\hyperlink{structinteract}{interact} }{\pageref{structinteract}}{}
\item\contentsline{section}{\hyperlink{structintermediate__t}{intermediate\_\-t} }{\pageref{structintermediate__t}}{}
\item\contentsline{section}{\hyperlink{structINTERVAL}{INTERVAL} (Sequence interval stack element used in subopt.c )}{\pageref{structINTERVAL}}{}
\item\contentsline{section}{\hyperlink{structLIST}{LIST} }{\pageref{structLIST}}{}
\item\contentsline{section}{\hyperlink{structLST__BUCKET}{LST\_\-BUCKET} }{\pageref{structLST__BUCKET}}{}
\item\contentsline{section}{\hyperlink{structmodel__detailsT}{model\_\-detailsT} (The data structure that contains the complete model details used throughout the calculations )}{\pageref{structmodel__detailsT}}{}
\item\contentsline{section}{\hyperlink{structmove__t}{move\_\-t} }{\pageref{structmove__t}}{}
\item\contentsline{section}{\hyperlink{structPAIR}{PAIR} (Base pair data structure used in subopt.c )}{\pageref{structPAIR}}{}
\item\contentsline{section}{\hyperlink{structpair__info}{pair\_\-info} (A base pair info structure )}{\pageref{structpair__info}}{}
\item\contentsline{section}{\hyperlink{structpairpro}{pairpro} }{\pageref{structpairpro}}{}
\item\contentsline{section}{\hyperlink{structparamT}{paramT} (The datastructure that contains temperature scaled energy parameters )}{\pageref{structparamT}}{}
\item\contentsline{section}{\hyperlink{structpath__t}{path\_\-t} }{\pageref{structpath__t}}{}
\item\contentsline{section}{\hyperlink{structpf__paramT}{pf\_\-paramT} (The datastructure that contains temperature scaled Boltzmann weights of the energy parameters )}{\pageref{structpf__paramT}}{}
\item\contentsline{section}{\hyperlink{structplist}{plist} (This datastructure is used as input parameter in functions of \hyperlink{PS__dot_8h}{PS\_\-dot.h} and others )}{\pageref{structplist}}{}
\item\contentsline{section}{\hyperlink{structPostorder__list}{Postorder\_\-list} }{\pageref{structPostorder__list}}{}
\item\contentsline{section}{\hyperlink{structpu__contrib}{pu\_\-contrib} (Contributions to p\_\-u )}{\pageref{structpu__contrib}}{}
\item\contentsline{section}{\hyperlink{structpu__out}{pu\_\-out} (Collection of all free\_\-energy of beeing unpaired values for output )}{\pageref{structpu__out}}{}
\item\contentsline{section}{\hyperlink{structsect}{sect} (Stack of partial structures for backtracking )}{\pageref{structsect}}{}
\item\contentsline{section}{\hyperlink{structsnoopT}{snoopT} }{\pageref{structsnoopT}}{}
\item\contentsline{section}{\hyperlink{structSOLUTION}{SOLUTION} (Solution element from subopt.c )}{\pageref{structSOLUTION}}{}
\item\contentsline{section}{\hyperlink{structstruct__en}{struct\_\-en} }{\pageref{structstruct__en}}{}
\item\contentsline{section}{\hyperlink{structsvm__model}{svm\_\-model} }{\pageref{structsvm__model}}{}
\item\contentsline{section}{\hyperlink{structswString}{swString} }{\pageref{structswString}}{}
\item\contentsline{section}{\hyperlink{structTree}{Tree} }{\pageref{structTree}}{}
\item\contentsline{section}{\hyperlink{structTwoDfold__solution}{TwoDfold\_\-solution} (Solution element returned from TwoDfoldList )}{\pageref{structTwoDfold__solution}}{}
\item\contentsline{section}{\hyperlink{structTwoDfold__vars}{TwoDfold\_\-vars} (Variables compound for 2Dfold MFE folding )}{\pageref{structTwoDfold__vars}}{}
\item\contentsline{section}{\hyperlink{structTwoDpfold__solution}{TwoDpfold\_\-solution} (Solution element returned from TwoDpfoldList )}{\pageref{structTwoDpfold__solution}}{}
\item\contentsline{section}{\hyperlink{structTwoDpfold__vars}{TwoDpfold\_\-vars} (Variables compound for 2Dfold partition function folding )}{\pageref{structTwoDpfold__vars}}{}
\end{DoxyCompactList}
