\hypertarget{2Dpfold_8h}{
\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dpfold.h File Reference}
\label{2Dpfold_8h}\index{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dpfold.h@{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dpfold.h}}
}
Include dependency graph for 2Dpfold.h:\nopagebreak
\begin{figure}[H]
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\leavevmode
\includegraphics[width=212pt]{2Dpfold_8h__incl}
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\subsection*{Functions}
\begin{DoxyCompactItemize}
\item 
\hyperlink{structTwoDpfold__vars}{TwoDpfold\_\-vars} $\ast$ \hyperlink{group__kl__neighborhood__pf_ga1aca740e2a75ab2b2951538266e53d64}{get\_\-TwoDpfold\_\-variables} (const char $\ast$seq, const char $\ast$structure1, char $\ast$structure2, int \hyperlink{fold__vars_8h_af9202a1a09f5828dc731e2d9a10fa111}{circ})
\begin{DoxyCompactList}\small\item\em Get a datastructure containing all necessary attributes and global folding switches. \item\end{DoxyCompactList}\item 
\hyperlink{structTwoDpfold__vars}{TwoDpfold\_\-vars} $\ast$ \hyperlink{group__kl__neighborhood__pf_gacc2f66da7ee62096cab629fce7112216}{get\_\-TwoDpfold\_\-variables\_\-from\_\-MFE} (\hyperlink{structTwoDfold__vars}{TwoDfold\_\-vars} $\ast$mfe\_\-vars)
\begin{DoxyCompactList}\small\item\em Get the datastructure containing all necessary attributes and global folding switches from a pre-\/filled mfe-\/datastructure. \item\end{DoxyCompactList}\item 
void \hyperlink{group__kl__neighborhood__pf_gafe994291458ee2ac34d3eb825ef62a15}{destroy\_\-TwoDpfold\_\-variables} (\hyperlink{structTwoDpfold__vars}{TwoDpfold\_\-vars} $\ast$vars)
\begin{DoxyCompactList}\small\item\em Free all memory occupied by a \hyperlink{structTwoDpfold__vars}{TwoDpfold\_\-vars} datastructure. \item\end{DoxyCompactList}\item 
\hyperlink{structTwoDpfold__solution}{TwoDpfold\_\-solution} $\ast$ \hyperlink{group__kl__neighborhood__pf_ga3e1cd3b24eb635c65181182cbb4ae3eb}{TwoDpfoldList} (\hyperlink{structTwoDpfold__vars}{TwoDpfold\_\-vars} $\ast$vars, int maxDistance1, int maxDistance2)
\begin{DoxyCompactList}\small\item\em Compute the partition function for all distance classes. \item\end{DoxyCompactList}\item 
char $\ast$ \hyperlink{group__kl__neighborhood__stochbt_gae251288f50dd4ae7d315af0085775f71}{TwoDpfold\_\-pbacktrack} (\hyperlink{structTwoDpfold__vars}{TwoDpfold\_\-vars} $\ast$vars, int d1, int d2)
\begin{DoxyCompactList}\small\item\em Sample secondary structure representatives from a set of distance classes according to their Boltzmann probability. \item\end{DoxyCompactList}\item 
char $\ast$ \hyperlink{group__kl__neighborhood__stochbt_ga13430ac6a7f90df426774f131647d2c7}{TwoDpfold\_\-pbacktrack5} (\hyperlink{structTwoDpfold__vars}{TwoDpfold\_\-vars} $\ast$vars, int d1, int d2, unsigned int length)
\begin{DoxyCompactList}\small\item\em Sample secondary structure representatives with a specified length from a set of distance classes according to their Boltzmann probability. \item\end{DoxyCompactList}\end{DoxyCompactItemize}


\subsection{Detailed Description}
