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# /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/LPfold.h

Go to the documentation of this file.

    00001 #ifndef __VIENNA_RNA_PACKAGE_LPFOLD_H__
    00002 #define __VIENNA_RNA_PACKAGE_LPFOLD_H__
    00003
    00004 #include "data_structures.h"
    00005
    00006 #ifdef __GNUC__
    00007 #define DEPRECATED(func) func __attribute__ ((deprecated))
    00008 #else
    00009 #define DEPRECATED(func) func
    00010 #endif
    00011
    00029 void update_pf_paramsLP(int length);
    00030
    00037 void update_pf_paramsLP_par(int length, pf_paramT *parameters);
    00038
    00076 plist *pfl_fold(char *sequence,
    00077                 int winSize,
    00078                 int pairSize,
    00079                 float cutoffb,
    00080                 double **pU,
    00081                 struct plist **dpp2,
    00082                 FILE *pUfp,
    00083                 FILE *spup);
    00084
    00091 plist *pfl_fold_par(char *sequence,
    00092                     int winSize,
    00093                     int pairSize,
    00094                     float cutoffb,
    00095                     double **pU,
    00096                     struct plist **dpp2,
    00097                     FILE *pUfp,
    00098                     FILE *spup,
    00099                     pf_paramT *parameters);
    00100
    00101
    00102 void putoutpU_prob_par( double **pU,
    00103                         int length,
    00104                         int ulength,
    00105                         FILE *fp,
    00106                         int energies,
    00107                         pf_paramT *parameters);
    00108
    00109
    00124 void    putoutpU_prob(double **pU,
    00125                       int length,
    00126                       int ulength,
    00127                       FILE *fp,
    00128                       int energies);
    00129
    00130 void putoutpU_prob_bin_par( double **pU,
    00131                             int length,
    00132                             int ulength,
    00133                             FILE *fp,
    00134                             int energies,
    00135                             pf_paramT *parameters);
    00136
    00151 void    putoutpU_prob_bin(double **pU,
    00152                           int length,
    00153                           int ulength,
    00154                           FILE *fp,
    00155                           int energies);
    00156
    00162 DEPRECATED(void init_pf_foldLP(int length));
    00163
    00164 #endif