# Deprecated List

Global base_pair
  Do not use this variable anymore!

Global centroid
  This function is deprecated and should not be used anymore as it is not threadsafe!

Global energy_of_circ_struct

  This function is deprecated and should not be used in future programs Use energy_of_circ_structure() instead!

Global energy_of_struct

  This function is deprecated and should not be used in future programs! Use energy_of_structure() instead!

Global energy_of_struct_pt

  This function is deprecated and should not be used in future programs! Use energy_of_structure_pt() instead!

Global expHairpinEnergy
  Use exp_E_Hairpin() from loop_energies.h instead

Global expLoopEnergy
  Use exp_E_IntLoop() from loop_energies.h instead

Global get_plist
  { This function is deprecated and will be removed soon!} use assign_plist_from_pr() instead!

Global HairpinE
  {This function is deprecated and will be removed soon. Use E_Hairpin() instead!}

Global iindx
  Do not use this variable anymore!

Global init_co_pf_fold
  { This function is deprecated and will be removed soon!}

Global init_pf_fold
  This function is obsolete and will be removed soon!

Global initialize_cofold
  {This function is obsolete and will be removed soon!}

Global initialize_fold

  {This function is deprecated and will be removed soon!}

Global LoopEnergy
  {This function is deprecated and will be removed soon. Use E_IntLoop() instead!}

Global Make_bp_profile

  This function is deprecated and will be removed soon! See Make_bp_profile_bppm() for a replacement

Global mean_bp_dist
  This function is not threadsafe and should not be used anymore. Use mean_bp_distance() instead!

Global pr
  Do not use this variable anymore!

Global PS_dot_plot
  This function is deprecated and will be removed soon! Use PS_dot_plot_list() instead!