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# /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/subopt.h

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    00001 /* subopt.h */
    00002 #ifndef __VIENNA_RNA_PACKAGE_SUBOPT_H__
    00003 #define __VIENNA_RNA_PACKAGE_SUBOPT_H__
    00004
    00005 #include "data_structures.h"
    00006
    00007 #define MAXDOS 1000
    00008
    00043 SOLUTION *subopt (char *seq,
    00044                   char *structure,
    00045                   int delta,
    00046                   FILE *fp);
    00047
    00053 SOLUTION *subopt_par( char *seq,
    00054                       char *structure,
    00055                       paramT *parameters,
    00056                       int delta,
    00057                       int is_constrained,
    00058                       int is_circular,
    00059                       FILE *fp);
    00060
    00075 SOLUTION *subopt_circ ( char *seq,
    00076                         char *sequence,
    00077                         int delta,
    00078                         FILE *fp);
    00079
    00086 extern  int     subopt_sorted;
    00087
    00088
    00095 extern  double  print_energy;
    00096
    00113 extern  int     density_of_states[MAXDOS+1];
    00114  /* End of group dos */
    00116
    00117 #endif