\hypertarget{RNAstruct_8h_source}{
\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/RNAstruct.h}
}


\begin{footnotesize}\begin{alltt}
00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_RNASTRUCT\_H\_\_}
00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_RNASTRUCT\_H\_\_}
00003 \textcolor{preprocessor}{}
00024 \textcolor{preprocessor}{#define STRUC     2000}
00025 \textcolor{preprocessor}{}
00033 \textcolor{keywordtype}{char} *\hyperlink{RNAstruct_8h_a07b7e90e712559a1992fba3ac6d21bbd}{b2HIT}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure);             \textcolor{comment}{/* Full   -> HIT    [incl. root] 
      */}
00034 
00042 \textcolor{keywordtype}{char} *\hyperlink{RNAstruct_8h_a9c80d92391f2833549a8b6dac92233f0}{b2C}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure);               \textcolor{comment}{/* Full   -> Coarse [incl. root] 
      */}
00043 
00052 \textcolor{keywordtype}{char} *\hyperlink{RNAstruct_8h_a5cd2feb367feeacad0c03cb7ddba5f10}{b2Shapiro}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure);         \textcolor{comment}{/* Full -> weighted Shapiro [i.r.
      ] */}
00053 
00060 \textcolor{keywordtype}{char} *\hyperlink{RNAstruct_8h_a880d33066dd95441e5fbb73c57ed1c3e}{add_root}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure);                   \textcolor{comment}{/* \{Tree\} -> (\{Tree\}R)  
              */}
00061 
00069 \textcolor{keywordtype}{char}  *\hyperlink{RNAstruct_8h_abe3d815b420dc4553bfb23511198b4c6}{expand_Shapiro}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *coarse);
00070 
00071 \textcolor{comment}{/* add S for stacks to coarse struct */}
00079 \textcolor{keywordtype}{char}  *\hyperlink{RNAstruct_8h_a78d73cd54a068ef2812812771cdddc6f}{expand_Full}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure);      \textcolor{comment}{/* Full   -> FFull         */}
00080 
00088 \textcolor{keywordtype}{char}  *\hyperlink{RNAstruct_8h_a260c4b622093b76a883bf96628280de1}{unexpand_Full}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *ffull);        \textcolor{comment}{/* FFull  -> Full          */}
00089 
00096 \textcolor{keywordtype}{char}  *\hyperlink{RNAstruct_8h_a09a80253ac7b6bae606871ba7c6e5136}{unweight}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *wcoarse);           \textcolor{comment}{/* remove weights from coarse str
      uct */}
00097 
00107 \textcolor{keywordtype}{void}   \hyperlink{RNAstruct_8h_a1054c4477d53b31d79d4cb132100e87a}{unexpand_aligned_F}(\textcolor{keywordtype}{char} *align[2]);
00108 
00119 \textcolor{keywordtype}{void}   \hyperlink{RNAstruct_8h_a3c79042e6bf6f01706bf30ec9e69e8ac}{parse_structure}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure);  \textcolor{comment}{/* make structure statistics */}
00120 
00125 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{RNAstruct_8h_a3f31e0e48125601bfa57b52f8b038e8e}{loop_size}[STRUC];       \textcolor{comment}{/* loop sizes of a structure */}
00126 
00130 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{RNAstruct_8h_a8218c0d581a3fba2a1a56a196abe19a5}{helix_size}[STRUC];      \textcolor{comment}{/* helix sizes of a structure */}
00131 
00135 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{RNAstruct_8h_aef14e2f8ab3f61e8e659ba6b9003b08a}{loop_degree}[STRUC];     \textcolor{comment}{/* loop degrees of a structure */}
00136 
00140 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{RNAstruct_8h_a439fcb9f8d4f9f4d2227fde5fbfecb30}{loops};                  \textcolor{comment}{/* n of loops and stacks */}
00141 
00145 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{RNAstruct_8h_add2f952597e02d66e1116a9d11d252d6}{unpaired};
00146 
00150 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{RNAstruct_8h_a6341cbb704924824e0236c1dce791032}{pairs};        \textcolor{comment}{/* n of unpaired digits and pairs */}
00151 
00152 \textcolor{preprocessor}{#endif}
\end{alltt}\end{footnotesize}
