\hypertarget{structinteract}{
\section{interact Struct Reference}
\label{structinteract}\index{interact@{interact}}
}
\subsection*{Data Fields}
\begin{DoxyCompactItemize}
\item 
\hypertarget{structinteract_a1fc8b3860c083f164daa9712690a3a56}{
double $\ast$ \hyperlink{structinteract_a1fc8b3860c083f164daa9712690a3a56}{Pi}}
\label{structinteract_a1fc8b3860c083f164daa9712690a3a56}

\begin{DoxyCompactList}\small\item\em probabilities of interaction \item\end{DoxyCompactList}\item 
\hypertarget{structinteract_a54f8183542fff4c32ab7ace49a16c02c}{
double $\ast$ \hyperlink{structinteract_a54f8183542fff4c32ab7ace49a16c02c}{Gi}}
\label{structinteract_a54f8183542fff4c32ab7ace49a16c02c}

\begin{DoxyCompactList}\small\item\em free energies of interaction \item\end{DoxyCompactList}\item 
\hypertarget{structinteract_ad58303190f9e085c3ab59890cbf61223}{
double \hyperlink{structinteract_ad58303190f9e085c3ab59890cbf61223}{Gikjl}}
\label{structinteract_ad58303190f9e085c3ab59890cbf61223}

\begin{DoxyCompactList}\small\item\em full free energy for interaction between \mbox{[}k,i\mbox{]} k$<$i in longer seq and \mbox{[}j,l\mbox{]} j$<$l in shorter seq \item\end{DoxyCompactList}\item 
\hypertarget{structinteract_a41793812abae560805414761fec398fe}{
double \hyperlink{structinteract_a41793812abae560805414761fec398fe}{Gikjl\_\-wo}}
\label{structinteract_a41793812abae560805414761fec398fe}

\begin{DoxyCompactList}\small\item\em Gikjl without contributions for prob\_\-unpaired. \item\end{DoxyCompactList}\item 
\hypertarget{structinteract_ab6d031a21388be8763b75ea74c937f17}{
int \hyperlink{structinteract_ab6d031a21388be8763b75ea74c937f17}{i}}
\label{structinteract_ab6d031a21388be8763b75ea74c937f17}

\begin{DoxyCompactList}\small\item\em k$<$i in longer seq \item\end{DoxyCompactList}\item 
\hypertarget{structinteract_a61e457fbf943d57364be6ddf1b4e7b8a}{
int \hyperlink{structinteract_a61e457fbf943d57364be6ddf1b4e7b8a}{k}}
\label{structinteract_a61e457fbf943d57364be6ddf1b4e7b8a}

\begin{DoxyCompactList}\small\item\em k$<$i in longer seq \item\end{DoxyCompactList}\item 
\hypertarget{structinteract_a7555cb6363d1479341eb72b9c087aa34}{
int \hyperlink{structinteract_a7555cb6363d1479341eb72b9c087aa34}{j}}
\label{structinteract_a7555cb6363d1479341eb72b9c087aa34}

\begin{DoxyCompactList}\small\item\em j$<$l in shorter seq \item\end{DoxyCompactList}\item 
\hypertarget{structinteract_a030ab45056342e12cb3955e4defd3904}{
int \hyperlink{structinteract_a030ab45056342e12cb3955e4defd3904}{l}}
\label{structinteract_a030ab45056342e12cb3955e4defd3904}

\begin{DoxyCompactList}\small\item\em j$<$l in shorter seq \item\end{DoxyCompactList}\item 
\hypertarget{structinteract_ac9fcb5dca54ec5faa76e02b6488b9524}{
int \hyperlink{structinteract_ac9fcb5dca54ec5faa76e02b6488b9524}{length}}
\label{structinteract_ac9fcb5dca54ec5faa76e02b6488b9524}

\begin{DoxyCompactList}\small\item\em length of longer sequence \item\end{DoxyCompactList}\end{DoxyCompactItemize}


The documentation for this struct was generated from the following file:\begin{DoxyCompactItemize}
\item 
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/\hyperlink{data__structures_8h}{data\_\-structures.h}\end{DoxyCompactItemize}
