\hypertarget{ProfileAln_8h_source}{
\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/ProfileAln.h}
}


\begin{footnotesize}\begin{alltt}
00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_PROFILEALN\_H\_\_}
00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_PROFILEALN\_H\_\_}
00003 \textcolor{preprocessor}{}
00004 \textcolor{keywordtype}{float} profile\_aln(\textcolor{keyword}{const} \textcolor{keywordtype}{float} *T1,
00005                   \textcolor{keyword}{const} \textcolor{keywordtype}{char} *seq1,
00006                   \textcolor{keyword}{const} \textcolor{keywordtype}{float} *T2,
00007                   \textcolor{keyword}{const} \textcolor{keywordtype}{char} *seq2);
00008 
00009 \textcolor{keywordtype}{int} set\_paln\_params(\textcolor{keywordtype}{double} gap\_open,
00010                     \textcolor{keywordtype}{double} gap\_ext,
00011                     \textcolor{keywordtype}{double} seqweight,
00012                     \textcolor{keywordtype}{int} free\_ends);
00013 
00014 \textcolor{preprocessor}{#endif}
\end{alltt}\end{footnotesize}
