\hypertarget{subopt_8h}{
\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/subopt.h File Reference}
\label{subopt_8h}\index{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/subopt.h@{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/subopt.h}}
}


RNAsubopt and density of states declarations.  
Include dependency graph for subopt.h:\nopagebreak
\begin{figure}[H]
\begin{center}
\leavevmode
\includegraphics[width=209pt]{subopt_8h__incl}
\end{center}
\end{figure}
\subsection*{Functions}
\begin{DoxyCompactItemize}
\item 
\hyperlink{structSOLUTION}{SOLUTION} $\ast$ \hyperlink{group__subopt__wuchty_ga700f662506a233e42dd7fda74fafd40e}{subopt} (char $\ast$seq, char $\ast$structure, int delta, FILE $\ast$fp)
\begin{DoxyCompactList}\small\item\em Returns list of subopt structures or writes to fp. \item\end{DoxyCompactList}\item 
\hypertarget{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}{
\hyperlink{structSOLUTION}{SOLUTION} $\ast$ \hyperlink{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}{subopt\_\-par} (char $\ast$seq, char $\ast$structure, \hyperlink{structparamT}{paramT} $\ast$parameters, int delta, int is\_\-constrained, int is\_\-circular, FILE $\ast$fp)}
\label{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}

\begin{DoxyCompactList}\small\item\em Returns list of subopt structures or writes to fp. \item\end{DoxyCompactList}\item 
\hyperlink{structSOLUTION}{SOLUTION} $\ast$ \hyperlink{group__subopt__wuchty_ga8634516e4740e0b6c9a46d2bae940340}{subopt\_\-circ} (char $\ast$seq, char $\ast$sequence, int delta, FILE $\ast$fp)
\begin{DoxyCompactList}\small\item\em Returns list of circular subopt structures or writes to fp. \item\end{DoxyCompactList}\end{DoxyCompactItemize}
\subsection*{Variables}
\begin{DoxyCompactItemize}
\item 
\hypertarget{group__subopt__wuchty_ga873cf8ed69e0437f8efa8b1fec854a0e}{
int \hyperlink{group__subopt__wuchty_ga873cf8ed69e0437f8efa8b1fec854a0e}{subopt\_\-sorted}}
\label{group__subopt__wuchty_ga873cf8ed69e0437f8efa8b1fec854a0e}

\begin{DoxyCompactList}\small\item\em Sort output by energy. \item\end{DoxyCompactList}\item 
\hypertarget{group__subopt__wuchty_ga5e57d914bcb5feeecdf520e25313fcfe}{
double \hyperlink{group__subopt__wuchty_ga5e57d914bcb5feeecdf520e25313fcfe}{print\_\-energy}}
\label{group__subopt__wuchty_ga5e57d914bcb5feeecdf520e25313fcfe}

\begin{DoxyCompactList}\small\item\em printing threshold for use with logML \item\end{DoxyCompactList}\item 
int \hyperlink{group__dos_ga937634a76b46a22530a74906f1957a9e}{density\_\-of\_\-states} \mbox{[}MAXDOS+1\mbox{]}
\begin{DoxyCompactList}\small\item\em The Density of States. \item\end{DoxyCompactList}\end{DoxyCompactItemize}


\subsection{Detailed Description}
RNAsubopt and density of states declarations. 