- Main Page
- Related Pages
- Modules
- Data Structures
- Files

- File List
- Globals

# /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/part_func_up.h

Go to the documentation of this file.

    00001 #ifndef __VIENNA_RNA_PACKAGE_PART_FUNC_UP_H__
    00002 #define __VIENNA_RNA_PACKAGE_PART_FUNC_UP_H__
    00003
    00004 #include "data_structures.h"
    00005
    00006 #define   RNA_UP_MODE_1   1U
    00007 #define   RNA_UP_MODE_2   2U
    00008 #define   RNA_UP_MODE_3   4U
    00009
    00055 pu_contrib *pf_unstru(char *sequence,
    00056                       int max_w);
    00057
    00100 interact *pf_interact(const char *s1,
    00101                       const char *s2,
    00102                       pu_contrib *p_c,
    00103                       pu_contrib *p_c2,
    00104                       int max_w,
    00105                       char *cstruc,
    00106                       int incr3,
    00107                       int incr5);
    00108
    00112 void free_interact(interact *pin);
    00113
    00117 int Up_plot(pu_contrib *p_c,
    00118             pu_contrib *p_c_sh,
    00119             interact *pint,
    00120             char *ofile,
    00121             int **unpaired_values,
    00122             char *select_contrib,
    00123             char *head,
    00124             unsigned int mode);
    00125
    00129 pu_contrib  *get_pu_contrib_struct( unsigned int n,
    00130                                     unsigned int w);
    00131
    00135 void        free_pu_contrib_struct(pu_contrib *pu);
    00136
    00141 #endif