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# /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dfold.h

Go to the documentation of this file.

    00001 /*
    00002       minimum free energy
    00003       RNA secondary structure with
    00004       basepair distance d to reference structure prediction
    00005
    00006 */
    00007 #ifndef __VIENNA_RNA_PACKAGE_TWO_D_FOLD_H__
    00008 #define __VIENNA_RNA_PACKAGE_TWO_D_FOLD_H__
    00009
    00032 #include "data_structures.h"
    00033
    00034 #ifdef __GNUC__
    00035 #define DEPRECATED(func) func __attribute__ ((deprecated))
    00036 #else
    00037 #define DEPRECATED(func) func
    00038 #endif
    00039
    00057 TwoDfold_vars *get_TwoDfold_variables(const char *seq,
    00058                                       const char *structure1,
    00059                                       const char *structure2,
    00060                                       int circ);
    00061
    00071 void          destroy_TwoDfold_variables(TwoDfold_vars *our_variables);
    00072
    00076 DEPRECATED(TwoDfold_solution **TwoDfold(TwoDfold_vars *our_variables,
    00077                                         int distance1,
    00078                                         int distance2));
    00079
    00104 TwoDfold_solution *TwoDfoldList(TwoDfold_vars *vars,
    00105                                 int distance1,
    00106                                 int distance2);
    00107
    00126 char *TwoDfold_backtrack_f5(unsigned int j,
    00127                             int k,
    00128                             int l,
    00129                             TwoDfold_vars *vars);
    00130
    00134 #endif