\hypertarget{PKplex_8h_source}{
\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/PKplex.h}
}


\begin{footnotesize}\begin{alltt}
00001 \textcolor{preprocessor}{#ifndef PKPLEX\_H}
00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define PKPLEX\_H}
00003 \textcolor{preprocessor}{}
00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data_structures.h}"}
00005 
00006 \textcolor{keyword}{extern} \hyperlink{structdupVar}{dupVar} *PlexHits;
00007 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    PlexHitsArrayLength;
00008 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    NumberOfHits;
00009 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    verbose;
00010 
00011 
00015 \hyperlink{structdupVar}{dupVar}  **PKLduplexfold\_XS( \textcolor{keyword}{const} \textcolor{keywordtype}{char} *s1,
00016                             \textcolor{keywordtype}{int} **access\_s1,
00017                             \textcolor{keyword}{const} \textcolor{keywordtype}{int} threshold,
00018                             \textcolor{keyword}{const} \textcolor{keywordtype}{int} alignment\_length,
00019                             \textcolor{keyword}{const} \textcolor{keywordtype}{int} delta);
00020 
00021 \textcolor{keywordtype}{int}     arraySize(\hyperlink{structduplexT}{duplexT} **array);
00022 
00023 \textcolor{keywordtype}{void}    freeDuplexT(\hyperlink{structduplexT}{duplexT} **array);
00024 
00025 \textcolor{preprocessor}{#endif}
\end{alltt}\end{footnotesize}
