- Main Page
- Related Pages
- Modules
- Data Structures
- Files

- File List
- Globals

# /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/fold_vars.h

Go to the documentation of this file.

    00001 #ifndef __VIENNA_RNA_PACKAGE_FOLD_VARS_H__
    00002 #define __VIENNA_RNA_PACKAGE_FOLD_VARS_H__
    00003
    00004 #include "data_structures.h"
    00005
    00012 #define PUBLIC
    00013 #define PRIVATE static
    00014
    00018 extern int    fold_constrained;
    00019
    00027 extern int    noLonelyPairs;
    00028
    00050 extern int  dangles;
    00051
    00055 extern int  noGU;
    00056
    00060 extern int  no_closingGU;
    00061
    00067 extern int  tetra_loop;
    00068
    00076 extern int  energy_set;
    00077
    00081 extern int  circ;
    00082
    00086 extern int  csv;
    00087
    00091 extern int oldAliEn;
    00095 extern int ribo;
    00096
    00101 extern char *RibosumFile;
    00102
    00110 extern char *nonstandards;
    00111
    00118 extern double temperature;
    00119
    00124 extern int  james_rule;
    00125
    00129 extern int  logML;
    00130
    00142 extern int  cut_point;
    00143
    00150 extern bondT  *base_pair;
    00151
    00157 extern FLT_OR_DBL *pr;
    00158
    00165 extern int   *iindx;
    00166
    00178 extern double pf_scale;
    00179
    00186 extern int    do_backtrack;
    00187
    00195 extern char backtrack_type;
    00196
    00200 extern int gquad;
    00201
    00202
    00203 char * option_string(void);
    00204
    00215 void set_model_details(model_detailsT *md);
    00216
    00217 #endif