# Makefile.in generated by automake 1.11.6 from Makefile.am.
# Progs/Makefile.  Generated from Makefile.in by configure.

# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
# 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011 Free Software
# Foundation, Inc.
# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.




am__make_dryrun = \
  { \
    am__dry=no; \
    case $$MAKEFLAGS in \
      *\\[\ \	]*) \
        echo 'am--echo: ; @echo "AM"  OK' | $(MAKE) -f - 2>/dev/null \
          | grep '^AM OK$$' >/dev/null || am__dry=yes;; \
      *) \
        for am__flg in $$MAKEFLAGS; do \
          case $$am__flg in \
            *=*|--*) ;; \
            *n*) am__dry=yes; break;; \
          esac; \
        done;; \
    esac; \
    test $$am__dry = yes; \
  }
pkgdatadir = $(datadir)/ViennaRNA
pkgincludedir = $(includedir)/ViennaRNA
pkglibdir = $(libdir)/ViennaRNA
pkglibexecdir = $(libexecdir)/ViennaRNA
am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
install_sh_DATA = $(install_sh) -c -m 644
install_sh_PROGRAM = $(install_sh) -c
install_sh_SCRIPT = $(install_sh) -c
INSTALL_HEADER = $(INSTALL_DATA)
transform = $(program_transform_name)
NORMAL_INSTALL = :
PRE_INSTALL = :
POST_INSTALL = :
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
build_triplet = x86_64-unknown-linux-gnu
host_triplet = x86_64-unknown-linux-gnu
bin_PROGRAMS = RNAfold$(EXEEXT) RNAeval$(EXEEXT) RNAheat$(EXEEXT) \
	RNApdist$(EXEEXT) RNAdistance$(EXEEXT) RNAinverse$(EXEEXT) \
	RNAplot$(EXEEXT) RNAsubopt$(EXEEXT) RNALfold$(EXEEXT) \
	RNAcofold$(EXEEXT) RNApaln$(EXEEXT) RNAduplex$(EXEEXT) \
	RNAalifold$(EXEEXT) RNAplfold$(EXEEXT) RNAup$(EXEEXT) \
	RNAaliduplex$(EXEEXT) RNALalifold$(EXEEXT) RNA2Dfold$(EXEEXT) \
	RNAparconv$(EXEEXT) RNAPKplex$(EXEEXT) RNAplex$(EXEEXT) \
	RNAsnoop$(EXEEXT)
subdir = Progs
DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
am__aclocal_m4_deps = $(top_srcdir)/acinclude.m4 \
	$(top_srcdir)/m4/package.m4 $(top_srcdir)/configure.ac
am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
	$(ACLOCAL_M4)
mkinstalldirs = $(install_sh) -d
CONFIG_HEADER = $(top_builddir)/config.h
CONFIG_CLEAN_FILES =
CONFIG_CLEAN_VPATH_FILES =
am__installdirs = "$(DESTDIR)$(bindir)"
PROGRAMS = $(bin_PROGRAMS)
am_RNA2Dfold_OBJECTS = RNA2Dfold_cmdl.$(OBJEXT) RNA2Dfold.$(OBJEXT)
RNA2Dfold_OBJECTS = $(am_RNA2Dfold_OBJECTS)
RNA2Dfold_LDADD = $(LDADD)
am__DEPENDENCIES_1 =
RNA2Dfold_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNALalifold_OBJECTS = RNALalifold_cmdl.$(OBJEXT) \
	RNALalifold.$(OBJEXT)
RNALalifold_OBJECTS = $(am_RNALalifold_OBJECTS)
RNALalifold_LDADD = $(LDADD)
RNALalifold_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNALfold_OBJECTS = RNALfold_cmdl.$(OBJEXT) RNALfold.$(OBJEXT)
RNALfold_OBJECTS = $(am_RNALfold_OBJECTS)
RNALfold_LDADD = $(LDADD)
RNALfold_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAPKplex_OBJECTS = RNAPKplex_cmdl.$(OBJEXT) RNAPKplex.$(OBJEXT)
RNAPKplex_OBJECTS = $(am_RNAPKplex_OBJECTS)
RNAPKplex_LDADD = $(LDADD)
RNAPKplex_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAaliduplex_OBJECTS = RNAaliduplex_cmdl.$(OBJEXT) \
	RNAaliduplex.$(OBJEXT)
RNAaliduplex_OBJECTS = $(am_RNAaliduplex_OBJECTS)
RNAaliduplex_LDADD = $(LDADD)
RNAaliduplex_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAalifold_OBJECTS = RNAalifold_cmdl.$(OBJEXT) RNAalifold.$(OBJEXT)
RNAalifold_OBJECTS = $(am_RNAalifold_OBJECTS)
RNAalifold_LDADD = $(LDADD)
RNAalifold_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAcofold_OBJECTS = RNAcofold_cmdl.$(OBJEXT) RNAcofold.$(OBJEXT)
RNAcofold_OBJECTS = $(am_RNAcofold_OBJECTS)
RNAcofold_LDADD = $(LDADD)
RNAcofold_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAdistance_OBJECTS = RNAdistance_cmdl.$(OBJEXT) \
	RNAdistance.$(OBJEXT)
RNAdistance_OBJECTS = $(am_RNAdistance_OBJECTS)
RNAdistance_LDADD = $(LDADD)
RNAdistance_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAduplex_OBJECTS = RNAduplex_cmdl.$(OBJEXT) RNAduplex.$(OBJEXT)
RNAduplex_OBJECTS = $(am_RNAduplex_OBJECTS)
RNAduplex_LDADD = $(LDADD)
RNAduplex_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAeval_OBJECTS = RNAeval_cmdl.$(OBJEXT) RNAeval.$(OBJEXT)
RNAeval_OBJECTS = $(am_RNAeval_OBJECTS)
RNAeval_LDADD = $(LDADD)
RNAeval_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAfold_OBJECTS = RNAfold_cmdl.$(OBJEXT) RNAfold.$(OBJEXT)
RNAfold_OBJECTS = $(am_RNAfold_OBJECTS)
RNAfold_LDADD = $(LDADD)
RNAfold_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAheat_OBJECTS = RNAheat_cmdl.$(OBJEXT) RNAheat.$(OBJEXT)
RNAheat_OBJECTS = $(am_RNAheat_OBJECTS)
RNAheat_LDADD = $(LDADD)
RNAheat_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAinverse_OBJECTS = RNAinverse_cmdl.$(OBJEXT) RNAinverse.$(OBJEXT)
RNAinverse_OBJECTS = $(am_RNAinverse_OBJECTS)
RNAinverse_LDADD = $(LDADD)
RNAinverse_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNApaln_OBJECTS = RNApaln_cmdl.$(OBJEXT) RNApaln.$(OBJEXT)
RNApaln_OBJECTS = $(am_RNApaln_OBJECTS)
RNApaln_LDADD = $(LDADD)
RNApaln_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAparconv_OBJECTS = RNAparconv_cmdl.$(OBJEXT) RNAparconv.$(OBJEXT)
RNAparconv_OBJECTS = $(am_RNAparconv_OBJECTS)
RNAparconv_LDADD = $(LDADD)
RNAparconv_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNApdist_OBJECTS = RNApdist_cmdl.$(OBJEXT) RNApdist.$(OBJEXT)
RNApdist_OBJECTS = $(am_RNApdist_OBJECTS)
RNApdist_LDADD = $(LDADD)
RNApdist_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAplex_OBJECTS = RNAplex_cmdl.$(OBJEXT) RNAplex.$(OBJEXT)
RNAplex_OBJECTS = $(am_RNAplex_OBJECTS)
RNAplex_LDADD = $(LDADD)
RNAplex_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAplfold_OBJECTS = RNAplfold_cmdl.$(OBJEXT) RNAplfold.$(OBJEXT)
RNAplfold_OBJECTS = $(am_RNAplfold_OBJECTS)
RNAplfold_LDADD = $(LDADD)
RNAplfold_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAplot_OBJECTS = RNAplot_cmdl.$(OBJEXT) RNAplot.$(OBJEXT)
RNAplot_OBJECTS = $(am_RNAplot_OBJECTS)
RNAplot_LDADD = $(LDADD)
RNAplot_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAsnoop_OBJECTS = RNAsnoop_cmdl.$(OBJEXT) RNAsnoop.$(OBJEXT)
RNAsnoop_OBJECTS = $(am_RNAsnoop_OBJECTS)
RNAsnoop_LDADD = $(LDADD)
RNAsnoop_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAsubopt_OBJECTS = RNAsubopt_cmdl.$(OBJEXT) RNAsubopt.$(OBJEXT)
RNAsubopt_OBJECTS = $(am_RNAsubopt_OBJECTS)
RNAsubopt_LDADD = $(LDADD)
RNAsubopt_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
am_RNAup_OBJECTS = RNAup_cmdl.$(OBJEXT) RNAup.$(OBJEXT)
RNAup_OBJECTS = $(am_RNAup_OBJECTS)
RNAup_LDADD = $(LDADD)
RNAup_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
DEFAULT_INCLUDES = -I. -I$(top_builddir)
depcomp = $(SHELL) $(top_srcdir)/config/depcomp
am__depfiles_maybe = depfiles
am__mv = mv -f
COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
AM_V_CC = $(am__v_CC_$(V))
am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY))
am__v_CC_0 = @echo "  CC    " $@;
AM_V_at = $(am__v_at_$(V))
am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY))
am__v_at_0 = @
CCLD = $(CC)
LINK = $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
AM_V_CCLD = $(am__v_CCLD_$(V))
am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY))
am__v_CCLD_0 = @echo "  CCLD  " $@;
AM_V_GEN = $(am__v_GEN_$(V))
am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY))
am__v_GEN_0 = @echo "  GEN   " $@;
SOURCES = $(RNA2Dfold_SOURCES) $(RNALalifold_SOURCES) \
	$(RNALfold_SOURCES) $(RNAPKplex_SOURCES) \
	$(RNAaliduplex_SOURCES) $(RNAalifold_SOURCES) \
	$(RNAcofold_SOURCES) $(RNAdistance_SOURCES) \
	$(RNAduplex_SOURCES) $(RNAeval_SOURCES) $(RNAfold_SOURCES) \
	$(RNAheat_SOURCES) $(RNAinverse_SOURCES) $(RNApaln_SOURCES) \
	$(RNAparconv_SOURCES) $(RNApdist_SOURCES) $(RNAplex_SOURCES) \
	$(RNAplfold_SOURCES) $(RNAplot_SOURCES) $(RNAsnoop_SOURCES) \
	$(RNAsubopt_SOURCES) $(RNAup_SOURCES)
DIST_SOURCES = $(RNA2Dfold_SOURCES) $(RNALalifold_SOURCES) \
	$(RNALfold_SOURCES) $(RNAPKplex_SOURCES) \
	$(RNAaliduplex_SOURCES) $(RNAalifold_SOURCES) \
	$(RNAcofold_SOURCES) $(RNAdistance_SOURCES) \
	$(RNAduplex_SOURCES) $(RNAeval_SOURCES) $(RNAfold_SOURCES) \
	$(RNAheat_SOURCES) $(RNAinverse_SOURCES) $(RNApaln_SOURCES) \
	$(RNAparconv_SOURCES) $(RNApdist_SOURCES) $(RNAplex_SOURCES) \
	$(RNAplfold_SOURCES) $(RNAplot_SOURCES) $(RNAsnoop_SOURCES) \
	$(RNAsubopt_SOURCES) $(RNAup_SOURCES)
am__can_run_installinfo = \
  case $$AM_UPDATE_INFO_DIR in \
    n|no|NO) false;; \
    *) (install-info --version) >/dev/null 2>&1;; \
  esac
ETAGS = etags
CTAGS = ctags
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/missing --run aclocal-1.11
AMTAR = $${TAR-tar}
AM_DEFAULT_VERBOSITY = 0
AUTOCONF = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/missing --run autoconf
AUTOHEADER = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/missing --run autoheader
AUTOMAKE = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/missing --run automake-1.11
AWK = gawk
CC = gcc
CCDEPMODE = depmode=gcc3
CFLAGS = -g -O2
CLUSTER_DIR = 
CPP = gcc -E
CPPFLAGS = 
CXX = g++
CXXCPP = g++ -E
CXXDEPMODE = depmode=gcc3
CXXFLAGS = -g -O2
CXXLD = g++
CYGPATH_W = echo
DEFS = -DHAVE_CONFIG_H
DEPDIR = .deps
DOXYGEN_CMD_LATEX = /usr/bin/latex
DOXYGEN_CMD_MAKEINDEX = /usr/bin/makeindex
DOXYGEN_CONF = doxygen.conf
DOXYGEN_DOCDIR = doc
DOXYGEN_GENERATE_HTML = YES
DOXYGEN_GENERATE_LATEX = YES
DOXYGEN_HAVE_DOT = YES
DOXYGEN_PROJECT_NAME = RNAlib-2.1.2
DOXYGEN_SRCDIR = .
DOXYGEN_WITH_PDFLATEX = YES
ECHO_C = 
ECHO_N = -n
ECHO_T = 
EGREP = /bin/grep -E
EXEEXT = 
FPIC = -fpic
GREP = /bin/grep
INSTALL = /usr/bin/install -c
INSTALL_DATA = ${INSTALL} -m 644
INSTALL_PROGRAM = ${INSTALL}
INSTALL_SCRIPT = ${INSTALL}
INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
ISODATE = 2017-04-11
LDFLAGS = 
LIBOBJS = 
LIBS = -lm 
LIBSVM_DIR = libsvm-2.91
LTLIBOBJS = 
MAKEINFO = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/missing --run makeinfo
MKDIR_P = /bin/mkdir -p
OBJEXT = o
OPENMP_CFLAGS = -fopenmp
PACKAGE = ViennaRNA
PACKAGE_BUGREPORT = rna@tbi.univie.ac.at
PACKAGE_NAME = ViennaRNA
PACKAGE_STRING = ViennaRNA 2.1.2
PACKAGE_TARNAME = ViennaRNA
PACKAGE_URL = http://www.tbi.univie.ac.a/~ivo/RNA
PACKAGE_VERSION = 2.1.2
PATH_SEPARATOR = :
PERLPREFIX = 
PERL_INTERFACE = Perl
POW_LIB = 
PYTHON_INTERFACE = 
PerlCmd = /usr/bin/perl
PythonCmd = /homes/fmmarquesmadeira/.local/anaconda/envs/python3/bin/python
RANLIB = ranlib
REFERENCE_MANUAL_PDF_NAME = RNAlib-2.1.2.pdf
REFERENCE_MANUAL_TAGFILE = RNAlib-2.1.2.tag
SET_MAKE = 
SHELL = /bin/sh
STRIP = 
VERSION = 2.1.2
abs_builddir = /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/Progs
abs_srcdir = /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/Progs
abs_top_builddir = /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA
abs_top_srcdir = /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA
ac_ct_CC = gcc
ac_ct_CXX = g++
am__include = include
am__leading_dot = .
am__quote = 
am__tar = $${TAR-tar} chof - "$$tardir"
am__untar = $${TAR-tar} xf -
bindir = ${exec_prefix}/bin
build = x86_64-unknown-linux-gnu
build_alias = 
build_cpu = x86_64
build_os = linux-gnu
build_vendor = unknown
builddir = .
datadir = ${datarootdir}
datarootdir = ${prefix}/share
docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
dot = /usr/bin/dot
doxygen = /usr/bin/doxygen
dvidir = ${docdir}
egrep = /bin/egrep
exec_prefix = ${prefix}
host = x86_64-unknown-linux-gnu
host_alias = 
host_cpu = x86_64
host_os = linux-gnu
host_vendor = unknown
htmldir = ${docdir}
includedir = ${prefix}/include
infodir = ${datarootdir}/info
install_sh = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/install-sh
latex = /usr/bin/latex
libdir = ${exec_prefix}/lib
libexecdir = ${exec_prefix}/libexec
localedir = ${datarootdir}/locale
localstatedir = ${prefix}/var
makeindex = /usr/bin/makeindex
mandir = ${datarootdir}/man
mkdir_p = /bin/mkdir -p
oldincludedir = /usr/include
pdfdir = ${docdir}
pdflatex = no
perl = /usr/bin/perl
prefix = /usr/local
program_transform_name = s,x,x,
psdir = ${docdir}
sbindir = ${exec_prefix}/sbin
sharedstatedir = ${prefix}/com
srcdir = .
subdirs =  Kinfold RNAforester
sysconfdir = ${prefix}/etc
target_alias = 
top_build_prefix = ../
top_builddir = ..
top_srcdir = ..
#RNALfold_LINK = ${CCLD} \
#                  $(AM_CFLAGS) $(CFLAGS) \
#                  $(AM_LDFLAGS) $(LDFLAGS) -o $@

RNALfold_LINK = ${CXXLD} \
                  $(AM_CXXFLAGS) $(CXXFLAGS) \
                  $(AM_LDFLAGS) $(LDFLAGS) -o $@

LDADD = $(OPENMP_CFLAGS) ../lib/libRNA.a -lm
AM_CFLAGS = $(OPENMP_CFLAGS)
AM_CPPFLAGS = -I$(srcdir)/../H -I$(srcdir)/../lib
GENGETOPT_CMDL = RNAfold_cmdl.c RNAfold_cmdl.h\
              RNAalifold_cmdl.c RNAalifold_cmdl.h\
              RNAcofold_cmdl.c  RNAcofold_cmdl.h\
              RNAup_cmdl.c  RNAup_cmdl.h\
              RNALfold_cmdl.c RNALfold_cmdl.h\
              RNALalifold_cmdl.c RNALalifold_cmdl.h\
              RNAplfold_cmdl.c RNAplfold_cmdl.h\
              RNAduplex_cmdl.c RNAduplex_cmdl.h\
              RNAaliduplex_cmdl.c RNAaliduplex_cmdl.h\
              RNAeval_cmdl.c RNAeval_cmdl.h\
              RNAheat_cmdl.c RNAheat_cmdl.h\
              RNAsubopt_cmdl.c RNAsubopt_cmdl.h\
              RNA2Dfold_cmdl.c RNA2Dfold_cmdl.h\
              RNAparconv_cmdl.c RNAparconv_cmdl.h\
              RNAinverse_cmdl.c RNAinverse_cmdl.h\
              RNApaln_cmdl.c RNApaln_cmdl.h\
              RNAplot_cmdl.c RNAplot_cmdl.h\
              RNAPKplex_cmdl.c RNAPKplex_cmdl.h\
              RNAplex_cmdl.c RNAplex_cmdl.h\
              RNAsnoop_cmdl.c RNAsnoop_cmdl.h\
              RNAdistance_cmdl.c RNAdistance_cmdl.h\
              RNApdist_cmdl.c RNApdist_cmdl.h

GENGETOPT_FILES = RNAfold.ggo RNAalifold.ggo RNAcofold.ggo\
              RNAup.ggo RNALfold.ggo RNALalifold.ggo\
              RNAplfold.ggo RNAduplex.ggo RNAaliduplex.ggo\
              RNAeval.ggo RNAheat.ggo RNAsubopt.ggo RNA2Dfold.ggo\
              RNAparconv.ggo RNAinverse.ggo RNApaln.ggo RNAplot.ggo\
              RNAPKplex.ggo RNAplex.ggo RNAsnoop.ggo RNAdistance.ggo\
              RNApdist.ggo

EXTRA_DIST = ${GENGETOPT_FILES} ${GENGETOPT_CMDL}
RNAfold_SOURCES = RNAfold_cmdl.c RNAfold.c
RNAsubopt_SOURCES = RNAsubopt_cmdl.c RNAsubopt.c
RNAalifold_SOURCES = RNAalifold_cmdl.c RNAalifold.c
RNAcofold_SOURCES = RNAcofold_cmdl.c RNAcofold.c
RNAup_SOURCES = RNAup_cmdl.c RNAup.c
RNALfold_SOURCES = RNALfold_cmdl.c RNALfold.c
RNALalifold_SOURCES = RNALalifold_cmdl.c RNALalifold.c
RNAplfold_SOURCES = RNAplfold_cmdl.c RNAplfold.c
RNAduplex_SOURCES = RNAduplex_cmdl.c RNAduplex.c
RNAaliduplex_SOURCES = RNAaliduplex_cmdl.c RNAaliduplex.c
RNAeval_SOURCES = RNAeval_cmdl.c RNAeval.c
RNAheat_SOURCES = RNAheat_cmdl.c RNAheat.c
RNA2Dfold_SOURCES = RNA2Dfold_cmdl.c RNA2Dfold.c
RNAparconv_SOURCES = RNAparconv_cmdl.c RNAparconv.c
RNAinverse_SOURCES = RNAinverse_cmdl.c RNAinverse.c
RNApaln_SOURCES = RNApaln_cmdl.c RNApaln.c
RNAplot_SOURCES = RNAplot_cmdl.c RNAplot.c
RNAPKplex_SOURCES = RNAPKplex_cmdl.c RNAPKplex.c
RNAplex_SOURCES = RNAplex_cmdl.c RNAplex.c
RNAsnoop_SOURCES = RNAsnoop_cmdl.c RNAsnoop.c
RNAdistance_SOURCES = RNAdistance_cmdl.c RNAdistance.c
RNApdist_SOURCES = RNApdist_cmdl.c RNApdist.c
all: all-am

.SUFFIXES:
.SUFFIXES: .c .o .obj
$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
	@for dep in $?; do \
	  case '$(am__configure_deps)' in \
	    *$$dep*) \
	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
	        && { if test -f $@; then exit 0; else break; fi; }; \
	      exit 1;; \
	  esac; \
	done; \
	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu Progs/Makefile'; \
	$(am__cd) $(top_srcdir) && \
	  $(AUTOMAKE) --gnu Progs/Makefile
.PRECIOUS: Makefile
Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
	@case '$?' in \
	  *config.status*) \
	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
	  *) \
	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
	esac;

$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh

$(top_srcdir)/configure:  $(am__configure_deps)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(am__aclocal_m4_deps):
install-binPROGRAMS: $(bin_PROGRAMS)
	@$(NORMAL_INSTALL)
	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
	if test -n "$$list"; then \
	  echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \
	  $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \
	fi; \
	for p in $$list; do echo "$$p $$p"; done | \
	sed 's/$(EXEEXT)$$//' | \
	while read p p1; do if test -f $$p; \
	  then echo "$$p"; echo "$$p"; else :; fi; \
	done | \
	sed -e 'p;s,.*/,,;n;h' -e 's|.*|.|' \
	    -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \
	sed 'N;N;N;s,\n, ,g' | \
	$(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \
	  { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
	    if ($$2 == $$4) files[d] = files[d] " " $$1; \
	    else { print "f", $$3 "/" $$4, $$1; } } \
	  END { for (d in files) print "f", d, files[d] }' | \
	while read type dir files; do \
	    if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \
	    test -z "$$files" || { \
	      echo " $(INSTALL_PROGRAM_ENV) $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \
	      $(INSTALL_PROGRAM_ENV) $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \
	    } \
	; done

uninstall-binPROGRAMS:
	@$(NORMAL_UNINSTALL)
	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
	files=`for p in $$list; do echo "$$p"; done | \
	  sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \
	      -e 's/$$/$(EXEEXT)/' `; \
	test -n "$$list" || exit 0; \
	echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \
	cd "$(DESTDIR)$(bindir)" && rm -f $$files

clean-binPROGRAMS:
	-test -z "$(bin_PROGRAMS)" || rm -f $(bin_PROGRAMS)
RNA2Dfold$(EXEEXT): $(RNA2Dfold_OBJECTS) $(RNA2Dfold_DEPENDENCIES) $(EXTRA_RNA2Dfold_DEPENDENCIES) 
	@rm -f RNA2Dfold$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNA2Dfold_OBJECTS) $(RNA2Dfold_LDADD) $(LIBS)
RNALalifold$(EXEEXT): $(RNALalifold_OBJECTS) $(RNALalifold_DEPENDENCIES) $(EXTRA_RNALalifold_DEPENDENCIES) 
	@rm -f RNALalifold$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNALalifold_OBJECTS) $(RNALalifold_LDADD) $(LIBS)
RNALfold$(EXEEXT): $(RNALfold_OBJECTS) $(RNALfold_DEPENDENCIES) $(EXTRA_RNALfold_DEPENDENCIES) 
	@rm -f RNALfold$(EXEEXT)
	$(AM_V_GEN)$(RNALfold_LINK) $(RNALfold_OBJECTS) $(RNALfold_LDADD) $(LIBS)
RNAPKplex$(EXEEXT): $(RNAPKplex_OBJECTS) $(RNAPKplex_DEPENDENCIES) $(EXTRA_RNAPKplex_DEPENDENCIES) 
	@rm -f RNAPKplex$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAPKplex_OBJECTS) $(RNAPKplex_LDADD) $(LIBS)
RNAaliduplex$(EXEEXT): $(RNAaliduplex_OBJECTS) $(RNAaliduplex_DEPENDENCIES) $(EXTRA_RNAaliduplex_DEPENDENCIES) 
	@rm -f RNAaliduplex$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAaliduplex_OBJECTS) $(RNAaliduplex_LDADD) $(LIBS)
RNAalifold$(EXEEXT): $(RNAalifold_OBJECTS) $(RNAalifold_DEPENDENCIES) $(EXTRA_RNAalifold_DEPENDENCIES) 
	@rm -f RNAalifold$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAalifold_OBJECTS) $(RNAalifold_LDADD) $(LIBS)
RNAcofold$(EXEEXT): $(RNAcofold_OBJECTS) $(RNAcofold_DEPENDENCIES) $(EXTRA_RNAcofold_DEPENDENCIES) 
	@rm -f RNAcofold$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAcofold_OBJECTS) $(RNAcofold_LDADD) $(LIBS)
RNAdistance$(EXEEXT): $(RNAdistance_OBJECTS) $(RNAdistance_DEPENDENCIES) $(EXTRA_RNAdistance_DEPENDENCIES) 
	@rm -f RNAdistance$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAdistance_OBJECTS) $(RNAdistance_LDADD) $(LIBS)
RNAduplex$(EXEEXT): $(RNAduplex_OBJECTS) $(RNAduplex_DEPENDENCIES) $(EXTRA_RNAduplex_DEPENDENCIES) 
	@rm -f RNAduplex$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAduplex_OBJECTS) $(RNAduplex_LDADD) $(LIBS)
RNAeval$(EXEEXT): $(RNAeval_OBJECTS) $(RNAeval_DEPENDENCIES) $(EXTRA_RNAeval_DEPENDENCIES) 
	@rm -f RNAeval$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAeval_OBJECTS) $(RNAeval_LDADD) $(LIBS)
RNAfold$(EXEEXT): $(RNAfold_OBJECTS) $(RNAfold_DEPENDENCIES) $(EXTRA_RNAfold_DEPENDENCIES) 
	@rm -f RNAfold$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAfold_OBJECTS) $(RNAfold_LDADD) $(LIBS)
RNAheat$(EXEEXT): $(RNAheat_OBJECTS) $(RNAheat_DEPENDENCIES) $(EXTRA_RNAheat_DEPENDENCIES) 
	@rm -f RNAheat$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAheat_OBJECTS) $(RNAheat_LDADD) $(LIBS)
RNAinverse$(EXEEXT): $(RNAinverse_OBJECTS) $(RNAinverse_DEPENDENCIES) $(EXTRA_RNAinverse_DEPENDENCIES) 
	@rm -f RNAinverse$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAinverse_OBJECTS) $(RNAinverse_LDADD) $(LIBS)
RNApaln$(EXEEXT): $(RNApaln_OBJECTS) $(RNApaln_DEPENDENCIES) $(EXTRA_RNApaln_DEPENDENCIES) 
	@rm -f RNApaln$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNApaln_OBJECTS) $(RNApaln_LDADD) $(LIBS)
RNAparconv$(EXEEXT): $(RNAparconv_OBJECTS) $(RNAparconv_DEPENDENCIES) $(EXTRA_RNAparconv_DEPENDENCIES) 
	@rm -f RNAparconv$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAparconv_OBJECTS) $(RNAparconv_LDADD) $(LIBS)
RNApdist$(EXEEXT): $(RNApdist_OBJECTS) $(RNApdist_DEPENDENCIES) $(EXTRA_RNApdist_DEPENDENCIES) 
	@rm -f RNApdist$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNApdist_OBJECTS) $(RNApdist_LDADD) $(LIBS)
RNAplex$(EXEEXT): $(RNAplex_OBJECTS) $(RNAplex_DEPENDENCIES) $(EXTRA_RNAplex_DEPENDENCIES) 
	@rm -f RNAplex$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAplex_OBJECTS) $(RNAplex_LDADD) $(LIBS)
RNAplfold$(EXEEXT): $(RNAplfold_OBJECTS) $(RNAplfold_DEPENDENCIES) $(EXTRA_RNAplfold_DEPENDENCIES) 
	@rm -f RNAplfold$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAplfold_OBJECTS) $(RNAplfold_LDADD) $(LIBS)
RNAplot$(EXEEXT): $(RNAplot_OBJECTS) $(RNAplot_DEPENDENCIES) $(EXTRA_RNAplot_DEPENDENCIES) 
	@rm -f RNAplot$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAplot_OBJECTS) $(RNAplot_LDADD) $(LIBS)
RNAsnoop$(EXEEXT): $(RNAsnoop_OBJECTS) $(RNAsnoop_DEPENDENCIES) $(EXTRA_RNAsnoop_DEPENDENCIES) 
	@rm -f RNAsnoop$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAsnoop_OBJECTS) $(RNAsnoop_LDADD) $(LIBS)
RNAsubopt$(EXEEXT): $(RNAsubopt_OBJECTS) $(RNAsubopt_DEPENDENCIES) $(EXTRA_RNAsubopt_DEPENDENCIES) 
	@rm -f RNAsubopt$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAsubopt_OBJECTS) $(RNAsubopt_LDADD) $(LIBS)
RNAup$(EXEEXT): $(RNAup_OBJECTS) $(RNAup_DEPENDENCIES) $(EXTRA_RNAup_DEPENDENCIES) 
	@rm -f RNAup$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAup_OBJECTS) $(RNAup_LDADD) $(LIBS)

mostlyclean-compile:
	-rm -f *.$(OBJEXT)

distclean-compile:
	-rm -f *.tab.c

include ./$(DEPDIR)/RNA2Dfold.Po
include ./$(DEPDIR)/RNA2Dfold_cmdl.Po
include ./$(DEPDIR)/RNALalifold.Po
include ./$(DEPDIR)/RNALalifold_cmdl.Po
include ./$(DEPDIR)/RNALfold.Po
include ./$(DEPDIR)/RNALfold_cmdl.Po
include ./$(DEPDIR)/RNAPKplex.Po
include ./$(DEPDIR)/RNAPKplex_cmdl.Po
include ./$(DEPDIR)/RNAaliduplex.Po
include ./$(DEPDIR)/RNAaliduplex_cmdl.Po
include ./$(DEPDIR)/RNAalifold.Po
include ./$(DEPDIR)/RNAalifold_cmdl.Po
include ./$(DEPDIR)/RNAcofold.Po
include ./$(DEPDIR)/RNAcofold_cmdl.Po
include ./$(DEPDIR)/RNAdistance.Po
include ./$(DEPDIR)/RNAdistance_cmdl.Po
include ./$(DEPDIR)/RNAduplex.Po
include ./$(DEPDIR)/RNAduplex_cmdl.Po
include ./$(DEPDIR)/RNAeval.Po
include ./$(DEPDIR)/RNAeval_cmdl.Po
include ./$(DEPDIR)/RNAfold.Po
include ./$(DEPDIR)/RNAfold_cmdl.Po
include ./$(DEPDIR)/RNAheat.Po
include ./$(DEPDIR)/RNAheat_cmdl.Po
include ./$(DEPDIR)/RNAinverse.Po
include ./$(DEPDIR)/RNAinverse_cmdl.Po
include ./$(DEPDIR)/RNApaln.Po
include ./$(DEPDIR)/RNApaln_cmdl.Po
include ./$(DEPDIR)/RNAparconv.Po
include ./$(DEPDIR)/RNAparconv_cmdl.Po
include ./$(DEPDIR)/RNApdist.Po
include ./$(DEPDIR)/RNApdist_cmdl.Po
include ./$(DEPDIR)/RNAplex.Po
include ./$(DEPDIR)/RNAplex_cmdl.Po
include ./$(DEPDIR)/RNAplfold.Po
include ./$(DEPDIR)/RNAplfold_cmdl.Po
include ./$(DEPDIR)/RNAplot.Po
include ./$(DEPDIR)/RNAplot_cmdl.Po
include ./$(DEPDIR)/RNAsnoop.Po
include ./$(DEPDIR)/RNAsnoop_cmdl.Po
include ./$(DEPDIR)/RNAsubopt.Po
include ./$(DEPDIR)/RNAsubopt_cmdl.Po
include ./$(DEPDIR)/RNAup.Po
include ./$(DEPDIR)/RNAup_cmdl.Po

.c.o:
	$(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
#	$(AM_V_CC)source='$<' object='$@' libtool=no \
#	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \
#	$(AM_V_CC_no)$(COMPILE) -c $<

.c.obj:
	$(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
#	$(AM_V_CC)source='$<' object='$@' libtool=no \
#	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \
#	$(AM_V_CC_no)$(COMPILE) -c `$(CYGPATH_W) '$<'`

ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
	unique=`for i in $$list; do \
	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
	  done | \
	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
	      END { if (nonempty) { for (i in files) print i; }; }'`; \
	mkid -fID $$unique
tags: TAGS

TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
		$(TAGS_FILES) $(LISP)
	set x; \
	here=`pwd`; \
	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
	unique=`for i in $$list; do \
	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
	  done | \
	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
	      END { if (nonempty) { for (i in files) print i; }; }'`; \
	shift; \
	if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
	  test -n "$$unique" || unique=$$empty_fix; \
	  if test $$# -gt 0; then \
	    $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
	      "$$@" $$unique; \
	  else \
	    $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
	      $$unique; \
	  fi; \
	fi
ctags: CTAGS
CTAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
		$(TAGS_FILES) $(LISP)
	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
	unique=`for i in $$list; do \
	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
	  done | \
	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
	      END { if (nonempty) { for (i in files) print i; }; }'`; \
	test -z "$(CTAGS_ARGS)$$unique" \
	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
	     $$unique

GTAGS:
	here=`$(am__cd) $(top_builddir) && pwd` \
	  && $(am__cd) $(top_srcdir) \
	  && gtags -i $(GTAGS_ARGS) "$$here"

distclean-tags:
	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags

distdir: $(DISTFILES)
	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
	list='$(DISTFILES)'; \
	  dist_files=`for file in $$list; do echo $$file; done | \
	  sed -e "s|^$$srcdirstrip/||;t" \
	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
	case $$dist_files in \
	  */*) $(MKDIR_P) `echo "$$dist_files" | \
			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
			   sort -u` ;; \
	esac; \
	for file in $$dist_files; do \
	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
	  if test -d $$d/$$file; then \
	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
	    if test -d "$(distdir)/$$file"; then \
	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
	    fi; \
	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
	      cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
	    fi; \
	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
	  else \
	    test -f "$(distdir)/$$file" \
	    || cp -p $$d/$$file "$(distdir)/$$file" \
	    || exit 1; \
	  fi; \
	done
check-am: all-am
check: check-am
all-am: Makefile $(PROGRAMS)
installdirs:
	for dir in "$(DESTDIR)$(bindir)"; do \
	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
	done
install: install-am
install-exec: install-exec-am
install-data: install-data-am
uninstall: uninstall-am

install-am: all-am
	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am

installcheck: installcheck-am
install-strip:
	if test -z '$(STRIP)'; then \
	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	      install; \
	else \
	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	    "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
	fi
mostlyclean-generic:

clean-generic:

distclean-generic:
	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)

maintainer-clean-generic:
	@echo "This command is intended for maintainers to use"
	@echo "it deletes files that may require special tools to rebuild."
clean: clean-am

clean-am: clean-binPROGRAMS clean-generic mostlyclean-am

distclean: distclean-am
	-rm -rf ./$(DEPDIR)
	-rm -f Makefile
distclean-am: clean-am distclean-compile distclean-generic \
	distclean-tags

dvi: dvi-am

dvi-am:

html: html-am

html-am:

info: info-am

info-am:

install-data-am:

install-dvi: install-dvi-am

install-dvi-am:

install-exec-am: install-binPROGRAMS

install-html: install-html-am

install-html-am:

install-info: install-info-am

install-info-am:

install-man:

install-pdf: install-pdf-am

install-pdf-am:

install-ps: install-ps-am

install-ps-am:

installcheck-am:

maintainer-clean: maintainer-clean-am
	-rm -rf ./$(DEPDIR)
	-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic \
	maintainer-clean-local

mostlyclean: mostlyclean-am

mostlyclean-am: mostlyclean-compile mostlyclean-generic

pdf: pdf-am

pdf-am:

ps: ps-am

ps-am:

uninstall-am: uninstall-binPROGRAMS

.MAKE: install-am install-strip

.PHONY: CTAGS GTAGS all all-am check check-am clean clean-binPROGRAMS \
	clean-generic ctags distclean distclean-compile \
	distclean-generic distclean-tags distdir dvi dvi-am html \
	html-am info info-am install install-am install-binPROGRAMS \
	install-data install-data-am install-dvi install-dvi-am \
	install-exec install-exec-am install-html install-html-am \
	install-info install-info-am install-man install-pdf \
	install-pdf-am install-ps install-ps-am install-strip \
	installcheck installcheck-am installdirs maintainer-clean \
	maintainer-clean-generic maintainer-clean-local mostlyclean \
	mostlyclean-compile mostlyclean-generic pdf pdf-am ps ps-am \
	tags uninstall uninstall-am uninstall-binPROGRAMS


# remove all generated man pages
maintainer-clean-local:
	rm -rf $(GENGETOPT_CMDL)

RNAfold.c:    RNAfold_cmdl.h

RNAfold_cmdl.h  RNAfold_cmdl.c: RNAfold.ggo
	gengetopt -i RNAfold.ggo

RNAsubopt.c:    RNAsubopt_cmdl.h

RNAsubopt_cmdl.h  RNAsubopt_cmdl.c: RNAsubopt.ggo
	gengetopt -i RNAsubopt.ggo

RNAalifold.c:    RNAalifold_cmdl.h

RNAalifold_cmdl.h  RNAalifold_cmdl.c: RNAalifold.ggo
	gengetopt -i RNAalifold.ggo

RNAcofold.c:    RNAcofold_cmdl.h

RNAcofold_cmdl.h  RNAcofold_cmdl.c: RNAcofold.ggo
	gengetopt -i RNAcofold.ggo

RNAup.c:        RNAup_cmdl.h

RNAup_cmdl.h  RNAup_cmdl.c: RNAup.ggo
	gengetopt -i RNAup.ggo

RNALfold.c:       RNALfold_cmdl.h

RNALfold_cmdl.h  RNALfold_cmdl.c: RNALfold.ggo
	gengetopt -i RNALfold.ggo

RNALalifold.c:      RNALalifold_cmdl.h

RNALalifold_cmdl.h  RNALalifold_cmdl.c: RNALalifold.ggo
	gengetopt -i RNALalifold.ggo

RNAplfold.c:      RNAplfold_cmdl.h

RNAplfold_cmdl.h  RNAplfold_cmdl.c: RNAplfold.ggo
	gengetopt -i RNAplfold.ggo

RNAduplex.c:      RNAduplex_cmdl.h

RNAduplex_cmdl.h  RNAduplex_cmdl.c: RNAduplex.ggo
	gengetopt -i RNAduplex.ggo

RNAaliduplex.c:   RNAaliduplex_cmdl.h

RNAaliduplex_cmdl.h  RNAaliduplex_cmdl.c: RNAaliduplex.ggo
	gengetopt -i RNAaliduplex.ggo

RNAeval.c:   RNAeval_cmdl.h

RNAeval_cmdl.h  RNAeval_cmdl.c: RNAeval.ggo
	gengetopt -i RNAeval.ggo

RNAheat.c:   RNAheat_cmdl.h

RNAheat_cmdl.h  RNAheat_cmdl.c: RNAheat.ggo
	gengetopt -i RNAheat.ggo

RNA2Dfold.c:    RNA2Dfold_cmdl.h

RNA2Dfold_cmdl.h  RNA2Dfold_cmdl.c: RNA2Dfold.ggo
	gengetopt -i RNA2Dfold.ggo

RNAparconv.c:    RNAparconv_cmdl.h

RNAparconv_cmdl.h  RNAparconv_cmdl.c: RNAparconv.ggo
	gengetopt -i RNAparconv.ggo

RNAinverse.c:   RNAinverse_cmdl.h

RNAinverse_cmdl.h  RNAinverse_cmdl.c: RNAinverse.ggo
	gengetopt -i RNAinverse.ggo

RNApaln.c:   RNApaln_cmdl.h

RNApaln_cmdl.h  RNApaln_cmdl.c: RNApaln.ggo
	gengetopt -i RNApaln.ggo

RNAplot.c:   RNAplot_cmdl.h

RNAplot_cmdl.h  RNAplot_cmdl.c: RNAplot.ggo
	gengetopt -i RNAplot.ggo

RNAPKplex.c:    RNAPKplex_cmdl.h

RNAPKplex_cmdl.h  RNAPKplex_cmdl.c: RNAPKplex.ggo
	gengetopt -i RNAPKplex.ggo

RNAplex.c:    RNAplex_cmdl.h

RNAplex_cmdl.h  RNAplex_cmdl.c: RNAplex.ggo
	gengetopt -i RNAplex.ggo

RNAsnoop.c:    RNAsnoop_cmdl.h

RNAsnoop_cmdl.h  RNAsnoop_cmdl.c: RNAsnoop.ggo
	gengetopt -i RNAsnoop.ggo

RNAdistance.c:    RNAdistance_cmdl.h

RNAdistance_cmdl.h  RNAdistance_cmdl.c: RNAdistance.ggo
	gengetopt -i RNAdistance.ggo

RNApdist.c:    RNApdist_cmdl.h

RNApdist_cmdl.h  RNApdist_cmdl.c: RNApdist.ggo
	gengetopt -i RNApdist.ggo

# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
