RNAlib-2.1.2
ViennaRNA Package core - RNAlib
Parsing and Comparing - Functions to Manipulate Structures
Example - A Small Example Program
RNA Secondary Structure Folding
Calculating Minimum Free Energy (MFE) Structures
MFE Structures of two hybridized Sequences
MFE Consensus Structures for Sequence Alignment(s)
Local MFE structure Prediction and Z-scores
Calculating MFE representatives of a Distance Based Partitioning
Calculating Partition Functions and Pair Probabilities
Compute the structure with maximum expected accuracy (MEA)
Compute the centroid structure
Partition Function for two hybridized Sequences
Partition Function for two hybridized Sequences as a stepwise Process
Partition Function and Base Pair Probabilities for Sequence Alignment(s)
Partition functions for locally stable secondary structures
Calculate Partition Functions of a Distance Based Partitioning
Enumerating Suboptimal Structures
Suboptimal structures according to Zuker et al. 1989
Calculate Secondary Structures of two RNAs upon Dimerization
MFE Structures of two hybridized Sequences
Partition Function for two hybridized Sequences
Partition Function for two hybridized Sequences as a stepwise Process
Predicting Consensus Structures from Alignment(s)
MFE Consensus Structures for Sequence Alignment(s)
Partition Function and Base Pair Probabilities for Sequence Alignment(s)
Stochastic Backtracking of Consensus Structures from Sequence Alignment(s)
Predicting Locally stable structures of large sequences
Local MFE structure Prediction and Z-scores
Change and Precalculate Energy Parameter Sets and Boltzmann Factors
mainpage.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dfold.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dpfold.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/ali_plex.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/alifold.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/aln_util.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/cofold.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/convert_epars.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/data_structures.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/dist_vars.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/duplex.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/edit_cost.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/energy_const.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/energy_par.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/findpath.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/fold.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/fold_vars.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/gquad.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/inverse.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/Lfold.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/loop_energies.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/LPfold.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/MEA.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/mm.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/move_set.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/naview.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/pair_mat.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/params.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/part_func.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/part_func_co.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/part_func_up.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/PKplex.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/plex.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/plot_layouts.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/ProfileAln.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/profiledist.h
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/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/read_epars.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/ribo.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/RNAstruct.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/snofold.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/snoop.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/stringdist.h
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/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/svm_utils.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/treedist.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/utils.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/lib/1.8.4_epars.h
/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/lib/1.8.4_intloops.h
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