Usage:
    ./jpred.pl -in/-sequence <FILE1> [-out/-output <FILEPREFIX>] [-dbname
    <DBNAME>] [-dbpath <PATH>] [-ncpu NNN] [-psi <psiblast output>]
    [-pred-nohits] [-verbose] [-debug] [-help] [-man]

Options:
    -in/-sequence FILE
         The path to the sequence file (in FASTA format) you want to
         predict.

    -out/-output FILEPREFIX
         A prefix to the filenames created by Jpred, defaults to the value
         set by -sequence/-in.

    -dbpath PATH
         Path to the uniref database used for PSI-BLAST querying.
         Default: .

    -dbname database
         Database to use for PSI-BLAST querying. This only accepts databases
         from a list which is pre-defined in the code.
         Default: uniref90

    -psi path
         Path to a PSI-BLAST output file.

    -ncpu NNN
         Number of CPU used by jpred.pl. Maximum value is 8
         Default: NNN = 1

    -pred-nohits
         Toggle allowing Jpred to make predictions even when there are no
         PSI-BLAST hits.

    -verbose
         Verbose mode. Print more information while running jpred.

    -debug
         Debug mode. Print debugging information while running jpred.

    -help
         Gives help on the programs usage.

    -man Displays this man page.