### JABAWS 2.2 ###

FROM tomcat:8.5

RUN apt-get update; apt-get -y install g++ && apt-get -y install make && \
  apt-get -y install libargtable2-dev && apt-get -y install gfortran

RUN wget --no-check-certificate https://www.python.org/ftp/python/2.7.13/Python-2.7.13.tgz && \
  tar -xzf Python-2.7.13.tgz && cd Python-2.7.13 && ./configure && make && make install

ENV WAR http://www.compbio.dundee.ac.uk/jabaws22/archive/jabaws.war
RUN wget $WAR -O ./jabaws.war
RUN mkdir -p $CATALINA_HOME/webapps/jabaws
RUN unzip ./jabaws.war -d $CATALINA_HOME/webapps/jabaws

ENV EXEC http://www.compbio.dundee.ac.uk/jabaws22/archive/docker/Executable.properties
RUN wget $EXEC -O ./Executable.properties
RUN mv ./Executable.properties $CATALINA_HOME/webapps/jabaws/conf/

RUN mkdir -p $CATALINA_HOME/webapps/jabaws/jobsout

WORKDIR $CATALINA_HOME/webapps/jabaws/binaries/src/

# compile the binaries
#RUN chmod +x ./compilebin.sh && ./compilebin.sh
RUN chmod +x ./setexecflag.sh && ./setexecflag.sh

WORKDIR $CATALINA_HOME

EXPOSE 8080
CMD ["catalina.sh", "run"]