Results for 5hvpa


5hvpa        : PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF : A46311
A46311       : QGQDPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSKSAWVQGATGGKR.YRWTTDRKVHLATGKVTHSFLHVPCPYPLLGRDLLTKLKAQIHF : SIVGAGAB1
SIVGAGAB1    : PQFSLWRRPVVTAYIEEQPIEVLLDTGADDSIVAGIELGPNYTPKIVGGIGGFINTKEYKDVKIKVLGKVIKGTIMTGDTPINIFGRNLLTAMGMSLNL : HIV1REVE
HIV1REVE     : ................................VHXIQLEGKWTPKMIGGIGGFIKVKEYHNVTVQIEGKEVQGXVLVGPTPVNIIGRNILTGLGCTLNF : POL_HV1MA
POL_HV1MA    : PQITLWQRPVVTVRVGGQLKEALLDTGADDTVLEEINLPGKWKPKMIGGIGGFIKVRQYDQILIEICGKKAIGTILVGPTPVNIIGRNMLTQIGCTLNF : SIVREV1
SIVREV1      : FELPLWRRPIKTVIIEGVPVKVLLDTGADDTIIKETDIQLTWRPKVIGGIGGGLNVKEYSNVEVKIEDKILRGTVLLGATPINIIGRNLLAPAGARLVM : HIV1U12749
HIV1U12749   : XXIXXWQRXXVTIKIGGQLKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPVEICGHKAIG.......................... : POL_VILV1
POL_VILV1    : APYVVTEAPKIEIKVGTRWKKLLVDTGADKTIVTSHDMSGIKGRIILQGIGGIIEGEKWEQVHLQYKDKIIRGTIVVLASPVEVLGRDNMSELGIGLIM : POL_HV2G1
POL_HV2G1    : PQFSLWKRPVVTAYIEVQPVEVLLDTGADDSIVAGIQLGDNYVPKIVGGIGGFINTKEIKNIEIKVLNKRVRATIMTGDTPINIFGRNILTALGMSLNL : GAG_IPMA
GAG_IPMA     : LVVSLNDRPKLRLKINGKEFEGILDTGADKSIISTHWWPKAESSHSLQGLGYQSCPTISSVALTWESSQQGKFIPYVLPLPVNLWGRDIMQHLGLILSN : HIVU867771
HIVU867771   : PQITLWQRPLVTVKIEGQLKEALLDTGADDTVLEDINLPGKWKPKMIGGIGGFIKVRQYDQIVIEICGKRAIGTVLVGPTPVNIIGRNMLVQLGC.... : BIMPEVPP
BIMPEVPP     : SYIRLDKQPFIKVFIGGRWVKGLVDTGADEVVLKNIHWDRIGTPIKQIGVNGVNVAKRKTHVEWRFKDKTGIIDVLFSDTPVNLFGRSLLRSIVTCFTL : MGU095683
MGU095683    : LVVGLSNRPIEVTWINGPTLKMMLDTGADVTVINEPSWPCTIPTVGVEGVGGLTNASRSEFLLQGRIREEIRVSPYIAAIGFNILGREALAQLHCVVSN : JE0065
JE0065       : VPWTITEAERVTLTVEGKSIPCLIDTGATHSTLPSFQGPVSLAPITVVGIDGQASKPLKTPPLWCQLGHSFMHSFLVIPCPLPLLGRNILTKLSASLTI : SNVGAGPOL
SNVGAGPOL    : QGSPALREPRLKVKVGGQVIDFLVDTGATHSVVQKPVGPMSESVAIIGATGNIRNYPKSEGRLVDLGRGLVTHSFLVIPCPDPLLGRDLLQKLRATISF : POL_BAEVM
POL_BAEVM    : QGSGAPPEPRLTLSVGGHPTTFLVDTGAQHSVLTKANGPLSRTSWVQGATGRKM.HKWTNRRTVNLGQGMVTHSFLVVPCPYPLLGRDLLTKLGAQIHF : JDVCG
JDVCG        : VGIRLNRQPFIKIFLGGRWVRALIDTGADEVVLKDIHWDRIAASVVQVGVTGRNIARRKSNVEWRFKNRYGIVDVLFSNTPVNLLGRSVLQSIVTKFTL : EIAGAGPOL1
EIAGAGPOL1   : VTYNLEKRPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLYQGTGIIGVGGNVETFSTP.VTIKKKGRHIKTRMLVADIPVTILGRDILQDLGAKLVL : POL_CAEVC
POL_CAEVC    : SSYGITSAPMVQVRIGSQQRNLLFDTGADRTIVRWHEGSGNAGRIKLQGIGGIVEGEKWNNVELEYKGETRKGTIVVLPSPVEVLGRDNMARFGIKIIM : POL_SIVGB
POL_SIVGB    : PEYSLSRRPIEEVSVDGVTIRALLDTGADDTIFNERNIKLKWQPKIIGGIGGNLRVKQYDNVYVEIRGKGTFGTVLIGPTPIDIIGRNIMEKLGGKLIL : SIU427201
SIU427201    : PEIPLWQRPMMEVLIQGQKCQALLDTGADDTVVEGIHLQGNWKPKTIGGIGGFISVQQYNKVPIQIGDRTVLATVLLGPNPVNIIGRNVLCLLGCTLNF : POL_SIVCZ
POL_SIVCZ    : PQITLWQRPLIPVKVEGQLCEALLDTGADDTVIERIQLQGLWKPKMIGGIGGFIKVKQFDNVHIEIEGRKVVGTVLVGPTPVNIIGRNILTQLGCTLVF : S46347
S46347       : PQVSLWRRPMKTVYIEGQKVTALLDTGADDSVIQGIELGDNWKPRIIGGIGGCINVKAYHNQEVKIEDKTCKATILVGETPVNIIGRNVLAQLGVTLNL : S46354
S46354       : ..............................SVIQGLELGDNWKPRIIGGIGGCINVRAYHNQEVEIEGKGCKATILVGDTPVNIIGRNVLAQLGVTLNL : SIVCOMGNM1
SIVCOMGNM1   : SQLSLWRRPMIEVDVEGDLVQMLVDTGADDTIIREEDIQLHWSPKIVGGLGGNITVRQYRNIRFTVVKKQVEGTLLVGPTPVNILGRNILTKLGVKLVM : SIU589911
SIU589911    : LEFPLWRRPMSKIYIQGQPVQVLLDTGADDTIIKEEDIHLEWRPKVVGGIGGGISVKQYDNILVNIDGKETRGNVLIGPTPINIVGRNILAPLGARLIM : POL_SIVAI
POL_SIVAI    : LELPLWRRPMKRVIIEGTPVQALLDTGADDTIIQEKDLHFPWRSKVVGGIGGGIHVKEYQGVQVQLEDKIITGSILIGSTPINIIGRNILAQAGMKLVM : POL_SIVA1
POL_SIVA1    : FELPLWRRPIRTCIIGGTAVKALLDTGADDTIIKDTDLQLRWRPKIVGGIGGGLNVKEYDNVEVQLEDKILRGTVLIGATPINIIGRNFLAQAGAKLVM : VPRT_JSRV
VPRT_JSRV    : VQNVTEARPELELRINANFFRGVLDTGADISVISDKYWPTTMAISTLQGIGQTTNPEQSSSLLTWKDKHTGQFKPYILPLPVNLWGRDILSKMGVYLYS : VPRT_SMRVH
VPRT_SMRVH   : VQQISQQRPTLKLKLNGKLFSGILDTGADATVISYTHWPRNTVATHLRGIGQATNPQQSAQMLKWEDSNNGHITPYVLPLPVNLWGRDILSQMKLVMCS : VPRT_SRV2
VPRT_SRV2    : VQPITHQKPSLVLWLDGKAFTGLIDTGADVTIIKQEDWPSHETLTNLRGIGQSNNPRQSSKYLTWKDKNSGLIKPFVIPLPVNLWGRDLLSQMKIMMCS : D88899

             : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91------- :
OrigSeq      : PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF :OrigSeq
cons         : ---------EEEEEE----EEEEE------EEEEEE-------EEEE-----EEEEE----EEEEE-----EEEEEE----------HHHHH---EEE- :cons
dsc          : ---------EEEEEE----EEEEE------HHHHHH-----EEEEEE-----EEEEE----EEEEEE-----EEEEE-------HHHHHHHH--EEE-- :dsc
mul          : ----------EEEEE----HE-H-------EEEE-----------EEE-------------E-EH------EEEEEE----EEEE----HHHHHEEEEE :mul
nnssp        : ----------EEEEE----EEEEE-------EE------------EE--------------EEEEE-----EEEEEE------------------EEEE :nnssp
phd          : ---------EEEEEE---EEEEEEE-----EEEEEE-------EEEEEE---EEEEEE---EEEEE---EEEEEEEEE---------HHHHH----EE- :phd
pred         : ---------EEEEEE----EEEEE------EEEEE-------------------EEE----EEEEE------EEEEE--------HHHHHHHHHHH--- :pred
zpred        : ----------EEEEE----EEEEE---HHHEEEEE--------EEEEEEE--EEE------EEHHHH----EEEEEE----EEEEEEEEEEEEEEEEEE :zpred


access       : EEBEBEEEE-BEBBBEBEBBEBBBEEEBEEBBBEBBEBEEE--BEBBBBBBBBBEBEE-EEBBBEBEEEEBEBBBBBBEBBB-BBB-EBBBEBBBEB-E : access

PHD Rel      : 963412555369996252257542247754479763256775225665302315633135279987153037999981899431041267622451329 : PHD Rel
Pred Rel     : 007669099769905787559966689997579678899999995866899977766767658955777777667777999766567778877666000 : Predator Rel


dssp         : -EEE-----EEEEEE--EEEEEEE------EEEE--------EEEEEEE--EEEEEEEEEEEEEEE--EEEEEEEEEE-----EE-HHHHHHH--EEE- :dssp
define       : EEEEE-----EEEE--EEEEE--------EEEEEE-EEEE-EEEEE------EEEEEEEEEEEEE--EEEEEEEEEEEE--EEEEHHHHHHHHEEEEEE :define
stride       : -EE------EEEEEE--EEEEEEE------EEEE-------EEEEEEEE--EEEEEEEEEEEEEEE--EEEEEEEEEE-----EE-HHHHHHH--EEE- :stride


Q3 values for 5hvpa  View SS in Rasmol

	dssp	define	stride
phd	81.82	57.58	81.82
dsc	68.69	53.54	70.71
pred	66.67	52.53	66.67
mul	60.61	54.55	60.61
nnssp	62.63	44.44	62.63
zpred	59.60	50.51	59.60
cons	76.77	56.57	76.77