Results for 1bmv1


1bmv1        : SISQQTVWNQMATVRTPLNFDSSKQSFCQFSVDLLGGGISVDKTGDWITLVQNSPISNLLRVAAWKKGCLMVKVVMSGNAAVKRSDWASLVQVFLTNSNSTEHFDACRWTKSEPHSWELIFPIEVCGPNNGFEMWSSEWANQTSWHLSFLVDNPKQSTTFDVLLGISQNFEIAGNTLMPAFSVPQ : VGNM_APMV
VGNM_APMV    : CSPCINVWSEFCALDIPVVDTTKVN.FAQYSLDLVNPTVSANASGNWRFVLIPSPMVYLLQTSDWKRGKLHFKLKILGKSNVKRSEWSSTSRIDVRRAPGTEYLNAITVFTAEPHADEINFEIEICGPNNGFEMWNADFGNQLSWMANVVIGNPDQAGIHQWYVRPGENFEVAGNRMVQPLALSG : VGNM_SQMVM
VGNM_SQMVM   : MVQQLGTYNPIWMVRTPLESTAQQN.FASFTADLMESTISGDSTGNWNITVYPSPIANLLKVAAWKKGTIRFQLICRG.AAVKQSDWAASARIDLINNLSNKALPARSWYITKPRGGDIEFDLEIAGPNNGFEMANSSWAFQTTWYLEIAIDNPKQFTLFELNACLMEDFEVAGNTLNPPILL.. : VGNM_CPSMV
VGNM_CPSMV   : SGQTQQVWNKIWRIGTPPQATDG...LFSFSIDLLGVELVTDGQEGAVSVLSSSPVANLLRTAAWKCGTLHVKVVMTGRVTTTRANWASHTQMSLVNSDNAQHYEAQKWSVSTPHAWEKEFSIDICGPNRGFEMWRSSWSNQTTWILEFTVAGASQSAIFEIFYRLDNSWKSAGNVLMPPLLVGN : VGNM_RCMV
VGNM_RCMV    : VRTTDGVYSTCFRVRTPLALK.D...SGSFTCDLIGGGITTDSNTGWNLTALNTPVANLLRTAAWKRGTIHVQVAMFG.STVKRSDWTSTVQLFLRQSMNTSSYDARVWVISKPGAAILEFSFDVEGPNNGFEMWEANWASQTSWFLEFLISNVTQNTLFEVSMKLDSNFCVAGTTLMPPFSVTA : VGNM_CPMV
VGNM_CPMV    : CAEASDVYSPCMIASTPPAPFSD...VTAVTFDLINGKITPVGDDNWNTHIYNPPIMNVLRTAAWKSGTIHVQLNVRG.AGVKRADWDGQVFVYLRQSMNPESYDARTFVISQPGSAMLNFSFDIIGPNSGFEFAESPWANQTTWYLECVATNPRQIQQFEVNMRFDPNFRVAGNILMPPFPLST : FGF4_MOUSE

             : 1001------1011------1021------1031------1041------1051------1061------1071------1081------1091------1101------1111------1121------1131------1141------1151------1161------1171------1181- :
OrigSeq      : SISQQTVWNQMATVRTPLNFDSSKQSFCQFSVDLLGGGISVDKTGDWITLVQNSPISNLLRVAAWKKGCLMVKVVMSGNAAVKRSDWASLVQVFLTNSNSTEHFDACRWTKSEPHSWELIFPIEVCGPNNGFEMWSSEWANQTSWHLSFLVDNPKQSTTFDVLLGISQNFEIAGNTLMPAFSVPQ :OrigSeq
cons         : ----------EEEEE------------EEEEEEE----EEE-----EEEEE----HHHHHHHHHHH---EEEEEEEE----E-E------EEEEEE----------EEEEE------EEEEEEEE-------EEEE-------EEEEEEEE-------EEEEEE--------------------- :cons
dsc          : -------EEEEEEEE------------EEEEEEEE--EEEE-----EEEEE-----HHHHHHHHH---EEEEEEEEE----EEE---EEEEEEEEE----------EEEEE------EEEEEEEE-------EEEEE------EEEEEEEE-------EEEEEE-----EEE------------- :dsc
mul          : ----------EEEE---------------EEEEE--------------EEE------HEHHHHH-----EEEEEEE---------------EEEE-----------EEEEE-----HHHH-EEE--------HHH----------EEEEE---------HHHHHH-----H-------------- :mul
nnssp        : ----------EEEE-------------EEEEE---------------EEEE----HHHHHHH-------EEEEEEE--------------EEEEEE-----------EEEE-------EEEEEEE------------------EEEEEEEE-------EEEEEE--------------------- :nnssp
phd          : ----------EEEEE--------------EEEEE----EEEE----EEEEE---HHHHHHHHHHHHH--EEEEEEEE---EE-EE-----EEEEEEE---------EEEEEE----EEEEEEEEEE-----EEEEE--HHHHHHEEEEEEE------EEEEEEEE-------------------- :phd
pred         : ----------EEE---------------------------------EEEEEE----HHHHHHHHHH---EEEEEEE-----EEE------EEEEEE----------EEEEE-------EEEEEEE-------EEE-----------EEEEE---------EEEE--------------------- :pred
zpred        : EEE----EEEEEEEE-------------EEEEEE---EEEE------EEEEE---EEEEEHHHHHHHHHEEEEEEEH----EEE------EEEEEE--------HHH-EEE------HHHHEEE-------EEEHH---------EEEEE-------EEEEEE-----HHHH-----EEEEEE-- :zpred


access       : EEEEBEBBBBBBBBEBEEEBEEEEEBBBBBBBEBBEBEBBBE-EEEBBBBBBBBEBBBBBEBBBBEEB-BBBEBBBEBEBBBEEBEBBBBBBBBBBEEEEEEBBEBBBBBBBEE-BEEBEBBBEBBBEEEBBEBBEBEBBEEBBBBBEBBBEEBEEBBBBEBBBEBEEEBEBBBEBBBBBBBBEE : access

PHD Rel      : 98613323530333358778898875312344311574365168972688536646799999999726469999986340121413433169998765885444423667857884124569875178996122234311222212312224877533688776315542224542347756579 : PHD Rel
Pred Rel     : 00777755666776789988979766555555558767678899997898909996669987789666660098656786555077765557669579977687665590609990655666656799999065557777750587569959909775557755587876656788890880000 : Predator Rel


dssp         : --------EEEEEEE-----------EEEEEEE----EEE-------EEEE---HHHHHHHHE--EEEEEEEEEEEE------HHH----EEEEEE----------EEEEE----EEEEEEEEEE-------E------------EEEEEEE------EEEEEEEE----EE--EEE---EE--- :dssp
define       : EEEEEEEEEEEEEEEEE-EEEE----EEEE-------EEEE----EEEEEEEEHHHHHHHHHH----EEEEEEEEEEEE------EEEEEEEEE--------EEEEEEEEEEE----EEEEEEEEEE----------------EEEEEEEEEEHHHHHEEEEE------EEEE--EEEEEEEEEE :define
stride       : --------EEEEEEE-----------EEEEEEE----EEE-------EEEE---HHHHHHHHE--EEEEEEEEEEEE------------EEEEEEE----------EEEEE----EEEEEEEEEE-------E------------EEEEEEE------EEEEEEEEEEEEEE--EEE---EE--- :stride


Q3 values for 1bmv1  View SS in Rasmol

	dssp	define	stride
phd	74.59	51.35	72.43
dsc	78.92	62.70	79.46
pred	73.51	52.43	71.89
mul	70.81	46.49	69.73
nnssp	81.08	59.46	80.00
zpred	67.57	54.59	67.03
cons	80.54	58.38	78.92