Results for 1bmv2


1bmv2        : METNLFKLSLDDVETPKGSMLDLKISQSKIALPKNTVGGTILRSDLLANFLTEGNFRASVDLQRTHRIKGMIKMVATVGIPENTGIALACAMNSSIRGRASSDIYTICSQDCELWNPACTKAMTMSFNPNPCSDAWSLEFLKRTGFHCDIICVTGWTATPMQDVQVTIDWFISSQECVPRTYCVLNPQNPFVLNRWMGKLTFPQGTSRSVKRMPLSIGGGAGAKSAILMNMPNAVLSMWRYFVGDLVFEVSKMTSPYIKCTVSFFIAFGNLADDTINFEAFPHKLVQFGEIQEKVVLKFSQEEFLTAWSTQVRPATTLLADGCPYLYAMVHDSSVSTIPGDFVIGVKLTIIENMCAYGLNPGISGSRLLGTIPQ : VGNM_APMV
VGNM_APMV    : MEVAQFGRLLDDTKSLKQSLLNSRIAAGRFSIPMTAVKGTVVFDGLLASLIG.TTLRGAPMFRHTYRQSTKLRFIFTINVPISTGIGLMVGYNSVTSDKHLTNEYTISSEESVVWNPACQGVLEFSVSPNPCGMYWSYDYFRQTGSRLSICVISPWSATPTTDCAVAWQIHVDDEQMTMSIFNPTQAPAVLPVKRWMGNLIFKQGAQEQVKKMPLAIGAAVGDDKTAVMTMPNSLAAMWNYQIGTFNFEFTKLSSPFIKGTLLAFIAMDQDVSSLEELQNFPNKIVQFDEKDGRAYVSFGEEHFAQAWSTQVSGAVTSAKRGCPYLYVVSKDCIASTICGDFQVGVKLLSIENYSPCGYNPGLVVASTIVQNTA : VGNM_SQMVM
VGNM_SQMVM   : NELDLAQLSLDDTSSLRGTALQTKLATSRIILSKTMVGNTVLREDLLATFLQDSNERAAIDLIRTHVIRGKIRCVASINVPENTGCALAICFNSGITGAADTDIYTTSSQNAIVWNPACEKAVELTFNPNPCGDAWNFVFLQQTKAHFAVQCVTGWTTTPLTDLALVLTWHIDRSLCVPKTLTISSAHASFPINRWMGKLSFPQGPARVLKRMPLAIGGGAGTKDAILMNMPNAVISLHRYFRGDFVFEITKMSSPYIKATIAFFIAFGDITEEMTNLESFPHKLVQFREIQGRTTITFTQSEFLTAWSTQVLSTVNPQKDGCPHLYALLHDSATSTIEGNFVIGVKLLDIRNYRAYGHNPGFEGARLLGISGQ : VGNM_CPSMV
VGNM_CPSMV   : SGADLFKRNLDDVSTISDTMLGAMIGQTKVVIPKTLVAGTVLKSGPLSDVMQQGSFRSTIALQRTHIITGKIHVVAMLETAVNTGLGLAICFNSGIRGKASADIYATCSQDAMIWNPSCTKVMQYAFNPNPCSDGWSLAFLERTGYHCVVTCVTGWTGTPLQDTFMTINWHISREACVPKIYTIFDPEPDMMLNRWMGRAIFPQQSTQVVRRMPLSIGGGAGAKNSILMNLPNAILSMWRYFKADLEFELIKMSSPYINATIAFFVAFGDLSDDTVNFEAFPHKLIVFSDKQDRTTISFSKDEFLMAWSTQVRPDTKLSEDGCPYLYAITHNGVSSSVEGDFILGIKMVGLKAVENIGVNPGIIGSRLLGAVAQ : VGNM_RCMV
VGNM_RCMV    : TDTDLFKLSLDDTSSPKGSLLDTRFAQKKVLIPKAMAGGADLLSSNLYDVLSGSSFRASLALARTHVVEGKIRCICTINLPENTGCCLAITVNSSNRGQFSTDIYTTGSQDRILWNPACSKNCDFSFNPNPCGTAWSLEFLRRTKFHLSVTCVSGWSAQPQTDIAMTMDWYVSNKPCVPCIYNVGTPGQNVWVNRWMGKLSFPQGSQNQLKQMPLAIGGGAGAKNSILMNMTNAFLSLWRYFHGDLVFEVQKMSSPFIKSTVTFFIGFGGLP.FSENLEDFPNKLIQFGEVQERVEITFTRKEFLTAWSTQVDPAGPVAGDGCPYLCAMVHDSTASTITGDFNLGVTLLRIENFVGIGRNPGIQGARLLGSMQA : VGNM_CPMV
VGNM_CPMV    : MEQNLFALSLDDTSSVRGSLLDTKFAQTRVLLSKAMAGGDVLLDEYLYDVVNGQDFRATVAFLRTHVITGKIKVTATTNISDNSGCCLMLAINSGVRGKYSTDVYTICSQDSMTWNPGCKKNFSFTFNPNPCGDSWSAEMISRSRVRMTVICVSGWTLSPTTDVIAKLDWSIVNEKCEPTIYHLADCQNWLPLNRWMGKLTFPQGVTSEVRRMPLSIGGGAGATQAFLANMPNSWISMWRYFRGELHFEVTKMSSPYIKATVTFLIAFGNLSDAFGFYESFPHRIVQFAEVEEKCTLVFSQQEFVTAWSTQVNPRTTLEADGCPYLYAIIHDSTTGTISGDFNLGVKLVGIKDFCGIGSNPGIDGSRLLGAIAQ : FGF4_MOUSE

             : 3001------3011------3021------3031------3041------3051------3061------3071------3081------3091------3101------3111------3121------3131------3141------3151------3161------3171------3181------2009------2019------2029------2039------2049------2059------2069------2079------2089------2099------2109------2119------2129------2139------2149------2159------2169------2179------2189 :
OrigSeq      : METNLFKLSLDDVETPKGSMLDLKISQSKIALPKNTVGGTILRSDLLANFLTEGNFRASVDLQRTHRIKGMIKMVATVGIPENTGIALACAMNSSIRGRASSDIYTICSQDCELWNPACTKAMTMSFNPNPCSDAWSLEFLKRTGFHCDIICVTGWTATPMQDVQVTIDWFISSQECVPRTYCVLNPQNPFVLNRWMGKLTFPQGTSRSVKRMPLSIGGGAGAKSAILMNMPNAVLSMWRYFVGDLVFEVSKMTSPYIKCTVSFFIAFGNLADDTINFEAFPHKLVQFGEIQEKVVLKFSQEEFLTAWSTQVRPATTLLADGCPYLYAMVHDSSVSTIPGDFVIGVKLTIIENMCAYGLNPGISGSRLLGTIPQ :OrigSeq
cons         : -----HH-----------HHHHHHH---EEEEEE----------HHHHHHH----HHHHHHHHHHEEEEEEEEEEEEE-------EEEEEEE-----------EEEE-----EE-------EEEEE--------HHHHHHHHH---EEEEEEEE----------EEEEEEEE--------EEEE---------HHH-----------HHHH---EEE-------HHEEE---HHHHHHHHHH---EEEEEE---------EEEEEEE-----------------EEEEE-----EEEEE--HHHHHHH----------------EEEEEE------EEE-EEEEEEEEEEE----------------HEEE--- :cons
dsc          : -----HH-----------EEEEE-----EEEEEEE-----------HHHHH--------HHHHHHEEEEEEEEEEEEE--------EEEEEE----------EEEEE--------------EEEEE-----------HHHHHH---EEEEEEEE----------EEEEEEE---------EEEE-------HHHHH--EEE------HHHHHEEEEE-------EEEEE---HHHHHHHHHH---EEEE-----------EEEEEEE-------HHHHH---HHHHHHH-----EEEEE--HHHHHH-----------------EEEEEE------EEE-EEEEEEEEEEE----------------HH----- :dsc
mul          : -HHHHHHHH----------HHHHHHHHHHEE------E-EEHHH-HHHHHH------HHHHHHH--EH---EEEE-EH---------EEE-------------EEE----------------EEE-------------HHH------EEEEEE----------EEEEEH----------EEEEE------HHHH---HHH---------HHHH------------EEEE-----HHHHH----HHHHHHHHH------EEEEEEEEHH--------HHH----HHHHHHH----HEEEE-HHHHHHHH----------------EEEEE-------------EE-EEEEEEH---------------------- :mul
nnssp        : --HHHHHHHH------------------EEEE-------------HHHHHH---------------EE---EEEEEEE-------EEEEEEE-----------EEEE-----------------EE-----------HHHHHH----EEEEEE-----------EEEEEEEE--------EE--------------------------------EEE---------EEE-----HHHHHHHH----EEEE----------EEEEEEE-----------------EEE-------EEEEE----HHHHH----------------EEEEEE------------EE-EEE------------------HHHHHHHH :nnssp
phd          : ------------------HHHHHHH---EEEEEE----------HHHHHH-----HHHHHHHHHHEEEEEEEEEEEEEE------EEEEEEE-----------EEEEE----EEE------EEEEEE-------HHHHHHHHHH--EEEEEEEE----------EEEEEEEEE------EEEEE---------HHH---------HHHHHH------E-----HHHE----HHHHHHHHHHHH--EEEEEEE-------EEEEEEEEE----------------EEEEEE-EEEEEEE---HHHHHHE--E-------------EEEEEEE-----EEEEEEEEEEEEEEEE---------------EEEE--- :phd
pred         : ---HHHHHH----------HHHHHHHHHHH--------EEEEHHHHHHHHH----HHHHHHHHHHHHHHH-EEEEEEE--------EEEEE------------EEEE----EEE-------EEEEE--------HHHHHHHHH----EEEEEE-----------EEEHHHHH--------EEEE--------HHHHH-----------------------------EEE----HHHHHHHHH---EEEEEE-----------EEEEE----------------EEEEE----HHHHHHH-HHHHHHHHHHH--------------EEEEE------------EEEEEEEEE-----------------EEE--- :pred
zpred        : HHHHHHHHHHH--------EHHHHHHHHEEEEEEEEEEEEEEEEEHHEEEE-----HHHHHHHHHHH----EEEEEEE-------EEEEEEE---------EEEEEE--------------EEEE----------EEHHHH------EEEEEEE--------EEEEEHH--------EEEEEEE-------EEH--------------EEEEEEEEEE-----HHEEEEE-HHHHHEEEE------HHHHHH-----EEEEEEEEEE--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-E-----------EEEEEEEEE-----EEEEEEEEEEEEEEEEEEE-------EEEEEEEEEEEE :zpred


access       : EEEEBBEBBBEEBEEBEBBBBEBEBBEBEBBBBEBBBEBBBBBEEBBBEBBEEEEBEBBBBBB-BBBBEBEBEBBBBBEBBEEBBBBBBBBBBBEBEEEBBBEBBBBBBEEBBBB-EEBEEBBEBBBEEEEBEEBBBBEBBEEBEB-BBBBBBBEBEBEE-EEBBBBBBBBBBEEEBBBEBBBBBEBEBBBBBB-BBBEBBBEEEBEEBBEEBBBBBBBEBEBEBBBBBEBEEBBBBBB-BB-BEBBBEBBEBBEEBBEBBBBBBBBBBEBBEBBEEBEEBEEEBBEBBE-EEEBBBEBBEEEBBEBBBEEB-EEBEBBEEBBEBBBBBBEEBBBBBBEBEBBBBBEBBBBEBBBBBB--EEBEBBEBBBBBEE : access

PHD Rel      : 96432223346764332236643213525888831235612211243454144414368765421365557899999845888862899983367566453516887232312547766524677527899871457788886167168999862778886211125788875468774365623786665311321222116962545652543310565313311211618999999997244378888268742231566776514663211121047764368862112678731323354212211256775678897468999955886315425667799999733444788996544312231379 : PHD Rel
Pred Rel     : 00766665667878986665887788658656878888657655866665567766887878775888865000907678999066699656779786689776806799776679907655580070009908658779788600759999077767999665666555555887888868887999988655566665779986057750877667889977876660777788677887696677785670897665698989567988878566689900788556675568878676899998865688878659999756876557988667880505667866558887989999076666667000 : Predator Rel


dssp         : -----------------------EEEEEEEEE-------EEEEEEEHHHHH-------HHHHH----E---EEEEEE---------EEEEEEE-EE--------------EEEEE-------EEEEE--------E-HHHHH----EEEEEEEE---------EEEEEEEEE---------EE-------EEEEEEEEEEEE--E-----EEEE------EEE--EEE--HHHH-HHH--EEEEEEEEEEEE------E--EEEEEE--------HHHHH--EEEE-------EEEEEE-HHH----EE---------------EEEEEE---EE------EEEEEEEEEEEEEE------------------- :dssp
define       : ---------EEEE-EEEEEHHHHH-EEEEEEE---------EEEEEHHHHHHH----HHHHHHHHEEEE-EEEEEEEEEE----EEEEEEEEEE--------HHHHHH-------------EEEEEE---------HHHHHHHHHEEEEEEEEEEE-EEEEEEEEEEEEEEEEEEEEEEEEEE-------EEEE----EEEEE-----EEEEEEEEEEEEEEE--EEEEHHHHHHHHHH----EEEEEEEEE-------EEEEEEEEEE-------------EEEEEEE---EEEEEEEEE----EEEEE-----------EEEEEEEE---EEEE-EEEEEEEEEEE----EEEEEEE----EEEEE------ :define
stride       : -----------------------EEEEEEEEE-------EEEEEEEHHHHHH-----HHHHHH----E--EEEEEEE---------EEEEEEE-EE--------------EEEEE------EEEEEE--------E-HHHHHH---EEEEEEEE---------EEEEEEEEEE--------EE-------EEEEEEEEEEEE--E-----EEEE------EEE--EEE--HHHHHHH---EEEEEEEEEEEE-----EEEEEEEEEE----------HHH--EEEEE------EEEEEE--------EE---------------EEEEEEEEEEEE-----EEEEEEEEEEEEEEEE----------------- :stride


Q3 values for 1bmv2  View SS in Rasmol

	dssp	define	stride
phd	64.44	61.23	65.24
dsc	68.18	59.36	65.51
pred	64.97	51.07	62.57
mul	65.24	50.80	62.03
nnssp	65.51	55.61	64.17
zpred	55.61	52.67	53.74
cons	66.31	61.23	65.51