Results for 1cgu-4-GJB


1cgu-4-GJB    : TGDQVTVRFVVNNASTTLGQNLYLTGNVAELGNWSTGSTAIGPAFNQVIHQYPTWYYDVSVPAGKQLEFKFFKKNGSTITWESGSNHTFTTPASGTATVTVNWQ : CDGT_BACOH
CDGT_BACOH    : TGDQVSIRFAVNNATTSLGTNLYMVGNVNELGNWDP.DQAIGPMFNQVMYQYPTWYYDISVPAEENLEYKFIKKDSGNVVWESGNNHTYTTPATGTDTVLVDWQ : AMT4_PSEST
AMT4_PSEST    : PGALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSP.AAALRLTDTSG...YPTWKGSIALPAGQNEEWKCLIRNEQVRQWQGGANS..LTPSEGATTVGRL.. : CDGT_BACS3
CDGT_BACS3    : TGDQVTVRFVINNATTALGQNVFLTGNVSELGNWDP.NNAIGPMYNQVVYQYPTWYYDVSVPAGQTIEFKFLKKQGSTVTWEGGANRTFTTPTSGTATVNVNWQ : CDGT_BACLI
CDGT_BACLI    : SGDQVSVRFVINNATTALGENIYLTGNVSELGNWTTGAASIGPAFNQVIHAYPTWYYDVSVPAGKQLEFKFFKKNGATITWEGGSNHTFTTPTSGTATVTINWQ : S73370B
S73370B       : TA..VAVTFDLTATT.TYGENIYLVGSISQLGDWET.SDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIRIESDSVEWESDPNREYTVPQACGTTVTDTWR : AMYB_BACCE
AMYB_BACCE    : LGVPLLSTIVVKNLPTTIGDTVYITGSRAELGSWTQ.NISTSLYYDSHS...NDWRGNVVLPAERNIEFKAFIKSKGVKSWQTIQQSWNPVPLKTTS.HTSS.. : CDG1_BACMA
CDG1_BACMA    : TGDQVTVRFLVNQANTNYGTNVYLVGNAAELGSWDP.NKAIGPMYNQVIAKYPSWYYDVSVPAGTKLDFKFIKKGGGTVTWEGGGNHTYTTPASGVGTVTVDWQ : AMY_STRGR
AMY_STRGR     : GTGQTSASFHVNATT.AWGENIYVTGDQAALGNWDP.ARALKLDPAAY....PVWKLDVPLAAGTPFQYKYLRKDAGKAVWESGANR...TATVGTTTLNDTWR : CDGT_KLEPN
CDGT_KLEPN    : NPTVQSINFTCNNGYTISGQSVYIIGNIPQLGGWDL.TKAVKISPTQ....YPQWSASLELPSDLNVEWKCVKRNEANVEWQSGANQFNSNDTQTTN...GSF. : AMYM_BACST
AMYM_BACST    : SGTQTSVVFTVKSAPTNLGDKIYLTGNIPELGNWSTDGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFIKRAGTIQWENGSNHVATTPTGATGNITVTWQ : A18991
A18991        : TGLQTSVRFVVNQAETSVGENLYVVGDVPELGSWDP.DKAIGPMFNQVLYSYPTWYYDVSVPANQDIEYKYIMKDQGNVSWESGNNHIYRTPENSTGIVEVNFN : CDG2_BACMA
CDG2_BACMA    : TADQVTVRFKVNNATTALGQNVYLTGNVAELGNWTA.ANAIGPMYNQVEASYPTWYFDVSVPANTALQFKFIKVNGSTVTWEGGNNHTFTSPSSGVATVTVDWQ : AMY_THETU
AMY_THETU     : TGNQICVRFVVNNASTVYGENVYLTGNVAELGNWDT.SKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIKKNGNTITWEGGSNHTYTVPSSSTGTVIVNWQ : CDGT_BACST
CDGT_BACST    : TNDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDT.SKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIKKDSGNVTWESGSNHVYTTPTNTTGKIIVDWQ : AMYB_THETU
AMYB_THETU    : TPGTIPVTFTINNATTYYGQNVYIVGSTSDLGNWNT.TYARGPASCP...NYPTWTITLNLLPGEQIQFKAVKIDSGNVTWEGGSNHTYTVPTSGTGSVTITWQ : BSU22045
BSU22045      : VAKTSNVTFTVNNATTTSGQNVYVVANIPELGNWNT...ANAIKMN..PSSYPTWKATIALPQGKAIEFKFIKKDQGNVIWESTSNRTYTVPFSSTGSYTASWN : AMYG_HORRE
AMYG_HORRE    : VTCQVSITFNINATT.YYGENLYVIGNSSDLGAWNI.ADAYPLSASAYTQDRPLWSAAIPLNAGEVISYQYVRQEDCDQPYIYETNRTLTVPACGGATTDDAWM : AMYG_NEUCR
AMYG_NEUCR    : HE..VLVTFNEKVTT.SYGQTVKVVGSIARLGNWAP.ASGLTLSAKQYSSSNPLWSTTIALPQGTSFKYKYVVVNSGSVKWENDPDRSYAVGTDCASTLDDTW. : AMYG_ASPOR
AMYG_ASPOR    : TT..VSVTFAVKATT.VYGESIKIVGSISQLGSWNP.SSATALNADSYTTDNPLWTGTINLPAGQSFEYKFIRVQN.AVTWESDPNRKYTVPSTCGVVQSDVW. : AMY_THECU
AMY_THECU     : GGDCTTVTARFHATVTWYGQEVAVVGSIPELGSWQP...AQGVRLRTDSGTYPVWSGAVDLPAGVGFEYKYVKLNR.TAPWSGSRAATASPPWMTSGNFYDSW. : SLAMLB
SLAMLB        : DPVSSGVSFAVDATT.SWGQDIYVTGNRPGLGHWDP.GGGLQLDPAAY....PVWKRDVELPEGTTFEYKSLRKADGNVTWESGANR...TATVNTTTLNDTWR : AMY_STRVL
AMY_STRVL     : TTATSGASFNVTATT.VVGQNIYVTGNRAELGNWAP.ASALKLDPATY....PVWKLTVGLPAGTSFEYKYIRKDAGNVTWESGANR...TATVPASVLNDTFR : CROGG2A
CROGG2A       : GGGSVEVTFDVYATT.VYGQNIYITGDVSELGNWTP.ANGVALSSAN....YPTWSATIALPADTTIQYKYVNIDGSTVIWEDAINREITTPASGTYTEKDTWD : JS0631
JS0631        : GAAVLSLTFNETADT.VWGQNLFVVGNVGALGNWAP.AAGAAMTWISGSGSTGQWRATVQLPADTPVQYKYVKKDGGNVVWESGGNRVVTTPAPGATAVNDSWK : NXL2_ASTST

              : 581-------591-------601-------611-------621-------631-------641-------651-------661-------671-------681- :
OrigSeq       : TGDQVTVRFVVNNASTTLGQNLYLTGNVAELGNWSTGSTAIGPAFNQVIHQYPTWYYDVSVPAGKQLEFKFFKKNGSTITWESGSNHTFTTPASGTATVTVNWQ :OrigSeq
cons          : ---EEEEEEEEE--------EEEEEE----------------------------EEEEEE------EEEEEEE----EEEEE-----EEEE------EEEEE-- :cons
dsc           : ----EEEEEEEE--------EEEEEE----------------------------EEEEEE------EEEEEE-----EEEEE------EEEE----EEEEEE-- :dsc
mul           : ----EEEEEEE----------EEEE------------------------------EEEEE-------HEEEE--------------------------EE---- :mul
nnssp         : ---EEEEEEEE---------EEEEE-----------------------------EEEEEE------EEEEEEE----EEEEE-----EEEE------EEEEEEE :nnssp
phd           : ---EEEEEEEEE---EE--EEEEEEEE------------EEEE--EEE------EEEEEE------EEEEEEEE---EEEEE-----EEE-------EEEEE-- :phd
pred          : ---EEEEEEEE----------EEEE------------------------------EEEE-------EEEEEEE-----EEEE-----EEE------EEEE---- :pred
zpred         : ---EEEEEEEE------EEEEEEEEEEEEEE-----------------------EEEEEE----HHHHHHHH-------EEE---------------------- :zpred


access        : EEEEBBBBBBBEBBBEBBBEBBBBBBBBBEBBE-EEEBEBBBBBBBEBBBE-B-B-BBBBBEBEEEBEBEBBEEEEEEBBBEE-EE-EBBBEEEBEBBB-BE-E : access

PHD Rel       : 99758999997244142341799985224221467886412342112236874258988627997168998984697489763897414324777314665329 : PHD Rel
Pred Rel      : 00977689966697777899599987998888999999887888876668999876666679990557775856999788808999768088999777566000 : Predator Rel


dssp          : ---EEEEEEEEE--------EEEEEE--HHHE--------E---E---------EEEEEEEE---EEEEEEEEE----EEE-----EEEE-----EEEEEEE-- :dssp
define        : -EEEEEEEEEEEE-----------------------------EEEEE---------EEEE----EEEEEE--------EEEE---EEEEEEEE----EEEEEEE :define
stride        : ---EEEEEEEEE--------EEEEEE--HHH---------E---E---------EEEEEEEE---EEEEEEEEE----EEE-----EEEE-----EEEEEEE-- :stride


Q3 values for 1cgu-4-GJB  View SS in Rasmol

	dssp	define	stride
phd	77.88	66.35	78.85
dsc	81.73	72.12	82.69
pred	80.77	71.15	81.73
mul	71.15	63.46	72.12
nnssp	80.77	75.00	81.73
zpred	64.42	52.88	65.38
cons	84.62	73.08	85.58