Results for 1dupa-1-AS


1dupa-1-AS    : MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDF : FIU569281
FIU569281     : DLMEGLWQEILEEFIDWVPGHLDKREEDAGYDL...LAEQDIHLMPEVRIVPTGVRLMLP.KGHWGMVVGKSSIAKQGLDVLG...GVIDEGYRGEIGVIMINLQKRSITLKEKQKVAQLIIIPCKHE..ELKQGE : VPRT_SRV2
VPRT_SRV2     : SGKRDEGPAPGPEWGSQLCSSNRASPGSAGLDL..CSTTHTVLTPEGPQTLATGVYGPLP.PNTFGLILGRGSTTVKGLQIYP...GVIDNDYTGEFKIMARAIS.SIITIPQGERIAQLVLLPLLRTAHKIQHPY : RNU64030
RNU64030      : LAYAHVRAKPKLRASLRFVRLTRGSARAAGYDL...YSAYDYTIPSEKALVKTDIQIAVP.SGCYGRVAPRSGLAVKHFIDVG..AGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERILYP..DLEEVQ : POL_VILV1
POL_VILV1     : VIRNPIQARIMELIGVHWVPGLQKRAEDAGYDL...ICPQEISIPAQVKRIAIDLKINLK.KDQWAMIGTKSSFANKGVFVQG...GIIDSGYQGTIQVVIYNSNNKEVVIPQGRKFAQLILMPLIHEEEPWGETR : MTCY05A617
MTCY05A617    : .............TTLAIVRLSRAHDGDAGVDL...YSAEDVELAPRRALVRTGVAVAVP.FGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAPIVVHRGDRIAQLLVQRVELV..ELVEVS : ASFV55KB35
ASFV55KB35    : ATIFFIQPIT...EAEAYYPP.RK...DLGVDV...YCCSNLVLQPGLNIIPLHIKVACEHKKCGFKIMARSSMTHERLLILANGIGLIDPGYVGELMLKIINLGDIPVQIWAKECLVQLVAQGDHVPDINILKRN : HERVKPRO1
HERVKPRO1     : VGKRAKGPASGPTCSSGFSGTSPATSSSAAVDL..CTIQAVSLLPGPPQKIPTGVYGPLP.EGTVGLILGRSSLNLKGVQIHT...SVVDSDYKGEIQLVISSSIP..WSASPGDRSAQLLLLPYIKGGSELKKIG : DUT_VARV
DUT_VARV      : .MFNMN.......SPVRFVKETRQSPYAAGYDL...YSAYDYTIPPERQLIKTDISMSMP.KFCYGRIAPRSGLSLKG.IDIG..GGVIDEDYRGNIGVILINNGKYTFNVNTGDRIAQLIYQRIYYP..ELKEVQ : MMTPROVR1
MMTPROVR1     : FKKLVKGQSPSPTSGLNPEAPPRATPGSAGLDLS..SQKDLIISLEGVSLVPTLVKGTLP.EGTTGLIIGRSSNYKKGLEVLP...GVVDSDFQGEIKVMVKAAKN.AVIIHKGERIAQLLLLPYLKLPNPIIKEE : VPRT_SMRVH
VPRT_SMRVH    : AGKLEQGPAPGPHRGFTVHPPWRATAGSAGLDL..CTTTDTILTTQSPLTLPVGIYGPLP.PQTFGLILAEPALPSKGIQVLP...GILDNDFEGEIHIILSTTK.DLVTIPKGTRLAQIVILPLQQINSNFHKPY : VPRT_JSRV
VPRT_JSRV     : FGKLGEGPAPGPEWGNTAGS.CRATRGSAGLDL..CATSYTVLTPEGVQTLATGVFGPLP.PGTVGLLLGRSSASLKGILIHP...GVIDSDYTGEIKILASAPN.KIIVINAGQRIAQLLLVPLVIQGKTINRDR : MERVLPOLY1
MERVLPOLY1    : SIYGTVSPIARIHGIVPLTITVPITLGSAGLEV...LAPEAGVLLPATTNIPLNWKLRLP.PGHFGLLMPLNQQAKKGITVLG...GVIDPDYHGEIGLSLHNGGKQHYVWSVGDPLGRLLVLPCPVIKNGKLQQP : DUT_HSVI1
DUT_HSVI1     : MDFNTDRGSAIPTDSVRFSVFKISSPGSAGFDL...SVLEDREFIRCHYRLPTGLAIAVP.RGYVGIITPRSS.QAKNFVSTG....IIDSDFRGHIHIMVSAIAD..FSVKKNQRIAQLVVTPCLTQS.EVVPYE : BRU3890619
BRU3890619    : .............MTRGFKKLERATEHSAGYDI...SASETVTIQPEIKMVSTGLAVQLG.DDEVLKLYDRSSNPVKRGIALINSVGIIDSDYYPEFKGLFMNISKEPVTISKGQRIMQGVFVKYLTTN...DDNA : S44300
S44300        : MTHSVQLKILDKRLGSEFPLPAYATTGSAGLDLRACLDEPLKIEPDETCLISTGLAIYLGHSNVAATILPRSGLGHKHGIVLGNLVGLIDSDYQGPLMVSCWNRGKEPYTINPGDRIAQLVVLPILKAQFAVVEEF : DUT_LYCES
DUT_LYCES     : EITEPSPKVQKLDPFFRVKKLSRASSLAAGYDL...SSAAETKVPAGKALVPTDLSIAVP.QGTYARIAPRSGLAWKYSIDVG..AGVIDADYRGPVGVVLFNHSEVDFEVKVGDRIAQLIVQKIVTP..EVEQVD : DUT_ORFN2
DUT_ORFN2     : MEFCHT.......ETLQVVRLARGSPGAAGLDL...CSAYDCVIPSCSRVVFTDLLIKPP.SGCYGRIAPRSGLAVKHFIDVG..AGVIDEDYRGNVGVVLFNFGNSDFEVKKGDRIAQLICERISCP..AVQEVN : S26429
S26429        : FGSSSVPPCSTSDPKLYFVRLVRATHGAAGYDL...FSAYDIKVPAGRALVPTDLVFQFP.PGCYGRIAPRSGLAAKFFIDVG..AGVIDPDYRGNVSVVLFNFSESSFNIRRGDRVAQLILERIMVP..ELSELT : DUT_SPVKA
DUT_SPVKA     : .............LYVKCVKLNRSMSGSAGYDL...YSAYSYTVKPNRILVRTDICLMIP.DKCYGRISPRSGLSLNYNIDIG..GGVIDSDYRGEIGIVFINNGCSDFNIKVGDRIAQIIFERVEYP..IMEEVK : DUT_YEAST
DUT_YEAST     : ..MTAT.......LNIQLRSATKGSATAAGYDI...YASQDITIPAGQGMVSTDISFTVP.VGTYGRIAPRSGLAVKNGIQTG..AGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVD.DAQIVVVD : DUT_CANAL
DUT_CANAL     : ..MTSEDQSLKKQLKVYLRSPTKGSALAAGYDL...YSAEAATIPAGQGLVSTDISIIVP.IGTYGRVAPRSGLAVKHGISTG..AGVIDADYRGEVKVVLFNHSEKDFEIKEGDRIAQLVLEQIVNADIKEISLE : CEU96695
CEU96695      : EAEPALKKSKTEQVTIQITKSTYGSAEAAGADL...YSAEDVTVPAGKLCVSTGIQMALP.IGYYGRVAPRSGLAAKHFIDVG..AGVIDSDYRGEVKVLLFNFGENDFEVKKGDRIAQLVCEQIAL..CTYSKVE : CEK07A12
CEK07A12      : CVQTVTEPSKMEMITIRFTEMTYGSISSAGADL...YSAEDVVVPAGKLCVSTGLQIELP.IGYYGRVAPRSGLAAKHFIDVG..AGVIDSDYRGEVKVLLFNFNTTAFEVKTGDRIAKLICEQIGN..GTYEEVK : STU09042

              : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131--- :
OrigSeq       : MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDF :OrigSeq
cons          : ----------------EEE-----------------------------EEE---EEEE------EEEEE------EEEEEEE-------------EEEEEEEE----EEEE---HHHHHHHHH------------- :cons
dsc           : --------------EEEEEE-----------EEE--------------EEE-EEEEEE------EEEE------EEEEEEEE-------------EEEEEEE------EEE--HHHHHHHEEE------------- :dsc
mul           : -------------------------------EE---E----EEE----EEEE--EEEE-------EEE----------EEEE------E------HEEEEEE------EEE----HHHHHHHHHHH------H--- :mul
nnssp         : --------------------------------HHHHHH------------------EE-------EEE-----------EEE--------------EEEEEE------EEE----HHHHHHHH------------- :nnssp
phd           : ----------------EEE-------------------EEEEE-----EEE---EEEE------EEEEE------EEEEEEE-----EEEE---EEEEEEEEE----EEEE---HHHHHHHHHEEE---------- :phd
pred          : ------EEE---------------------------------------EEE-------------EEEEE--------EEEEE--------------EEEEEEE----EEEEE--HHHHHHHHHHHH---------- :pred
zpred         : ----------------EEE---------EEEEE--------EEE----EEEEEEEEEEE-----EEEEE-------EEEEEE-----EEEE----EEEEEEE------EEE---HHHEEEEEEEE-------HHHH :zpred


access        : EEEEBEEEEEEEEBBBEBBEBBEBEEEBBBBEBEBBBBBBBBBBEEEEEBBBBBBBBBBEEEEBBBBBBBEBEBBBEBBBBBBEBBBBBBBE-EBEBBBBBBEBEEEBBBBEEEEEBBEBBBBBBB-BE-EBEEEE : access

PHD Rel       : 9986668898864430111124555542454311122311242167720330312677689751576741576650245785486631352551268999983598535642624897865311340566224479 : PHD Rel
Pred Rel      : 0077778707886888980797997779776556668666770999977766686775899998687768998665655666777666689999755690977999978787777577799088857686767000 : Predator Rel


dssp          : -----EEEE----E---E------------EEEE------EEE----EEEEEEEEEEE-----EEEEEEE-HHHHHHH-EEE----EEE------EEEEEEEE-----EEE----EEEEEEEEE------------ :dssp
define        : -EEEEEEEEE------EEEEE--------EEEEEE---EEEEE-----EEEEE-EEEEE-----EEEEE-HHHHHHHH------EEEEE------EEEEEEEE---EEEEE---EEEEEEEEEEEEEEEEEEEEE- :define
stride        : -----EEEE-------------E------EEEEEE-----EEE---EEEEEEEEEEEE-----EEEEEEE-HHHHHHH-EEE----EEE------EEEEEEEE-----EEE---EEEEEEEEEE------------ :stride


Q3 values for 1dupa-1-AS  View SS in Rasmol

	dssp	define	stride
phd	68.38	58.09	65.44
dsc	71.32	53.68	68.38
pred	66.18	48.53	64.71
mul	69.12	50.00	66.91
nnssp	62.50	41.91	61.03
zpred	73.53	61.03	72.06
cons	69.12	52.94	66.18