Results for 1epbb-1-DOMAK


1epbb-1-DOMAK    : AVVKDFDISKFLGFWYEIAFASKMGTPGLAHKEEKMGAMVVELKENLLALTTTYYSEDHCVLEKVTATEGDGPAKFQVTRLSGKKEVVVEATDYLTYAIIDITSLVAGAVHRTMKLYSRSLDDNGEALYNFRKITSDHGFSETDLYILKHDLTCVKVLQSAAES : MUP2_MOUSE
MUP2_MOUSE       : STGRNFNVEKINGEWHTIILASDKREKIE.DNGNFRLFLEQIHVK.SLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNT.FTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAKLCEEHGILRENIIDLSNANRCLQARE..... : S05440
S05440           : FERGNLDVDKLNGDWFSIVVASDKREKIE.ENGSMRVFVQHIDVN.SLGFTFRIKENGVCTEFSLVADKTAKDGEYFVEYDGENT.FTILKTDYDNYVMFHLVNVNNGETFQLMELYGRTKDLSSDIKEKFAKLCVAHGITRDNIIDLTKTDRCLQA....... : PGHD_RAT
PGHD_RAT         : TVQPNFQQDKFLGRWYSAGLASNSSWFREKKELLFMCQTVVAPSEGGLNLTSTFLRKNQCETKVMVLQPAGVPGQYTYNSPHWGSSLSVVETDYDEYAFLFSKGTKGGQDFRMATLYSRAQLLKEELKEKFITFSKDQGLTEEDIVFLPQPDKCIQE....... : CHKCH21A
CHKCH21A         : TVP...DSSEVAGKWYIVALASNTDSFLREKGKMKMVMARISFLD.ELEVSYAAPSPKGCRKWETTFKKTSDDGELYYSEEAEKT.VEVLDTDYKSYAVIFATRVKDGRTLHMMRLYSRSREVSPTAMAIFRKLARERNYTDEMVAVLPSQEECSVDEV..... : S52354
S52354           : QVQPDFQKEKVLGKWYGIGLASNSNWFKDRKSHMKMCTTIITPTDGNLEVTATYPKMDRCETKSMTYFKTEQLGGFRAKSPRYGSDMRVVETNYDEYILMYTVKTKGSETNQIVSLFGRDKDLRPELLDKFQNFAKSQGLADDNIIILPHTDQCMTEA...... : BTLGB
BTLGB            : QTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPEGDLEILLQKWENDECAQKKIIAEKTKIPAVFKIDALNENK.VLVLDTDYKKYLLVCMENSAEPEQSLVCQCLVRTPEVDDEALEKFDKALKALPMIRLSFNPTQLEEQCHI........ : LACC_FELCA
LACC_FELCA       : LTMDGLDLQKVAGTWHSMAMAASDISLLDSEYAPLRVYVQELRPRDNLEIILRKWEQKRCVQKKILAQKTELPAEFKISYLDENE.LIVLDTDYENYLFFCLENADAPGQNLVCQCLTRTLKADNEVMEKFDRALQTLPVVRLFFDPTQVAEQCRI........ : MUPM_MOUSE
MUPM_MOUSE       : SMERNFNVEQISGYWFSIAEASYEREKIE.EHGSMRAFVENITVN.SLVFKFHLIVNEECTEMTAIGEQTEKAGIYYMNYDGFNT.FSILKTDYDNYIMIHLINKKDGKTFQLMELYGREPDLSLDIKEKFAKLCEEHGIIRENIIDLTNVNRCLEARE..... : LIPO_BUFMA
LIPO_BUFMA       : PIQPDFQEDKILGKWYGIGLASNSNWFQSKKQQLKMCTTVITPTDGNLDVVATFPKLDRCEKKSMTYIKTEQPGRFLSKSPRYGSVIRVVESNYDEYTLMHTIKTKGNEVNTIVSLFGRRKTLSPELLDKFQQFAKEQGLTDDNILILPQTDSCMSEV...... : CATPDS
CATPDS           : SRQPNFQQDKFLGRWFTSGLASNSSWFREKKNALSMCISVVAPSEGGLNLTTTFLRKDQCETRTLLLRPAETPGCYSYTSPHWGSDVWVVATDYEEYALLYTAGTKSGQDFHMATLYSRTQTPRAEVKEKFSTFAKTRGFTEDAIVFLPKTERCMEEHR..... : SSPROSDSN
SSPROSDSN        : ..QPNFQEDKFLGRWFTSGLASNSSWFLEKKKVLSMCKSLVAPADGGFNLTSTFLRKDQCVTRTLMLRPAGPPGCYSYTSPHGGSEVSVVETDYKNYALLHTESGPSGPAFRMATLYSRSQAPGAAVREKFTAFAKARGFTEDGIVFLPRNEKCLEEHE..... : A40464
A40464           : P..PD.DQEDFSGKWYTKATVCDRNHTDGKRPMKVFPMTVTALEGGDLEVRITFRGKGHCHLRRITMHKTDEPGKYT.TFKGKKT.FYTKEIPVKDHYIFYIKGQRHGKSYLKGKLVGRDSKDNPEAMEEFKKFVKSKGFREENITVPELLDECVPGSD..... : D87752
D87752           : QIQENFDLQRIYGKWYDIAIGSTCKWLKHHKEKFNMGTLELSDGDGEVRIVNTRMRHGTCSQIVGSYQKTETPGKFDYFNARWGTQNYIVFTNYNEYVIMQMRKKKGSETTTTVKLYGRSPDLRPTLVDEFRQFALAQGIPEDSIVMLPNNGECSPGEIEVRPR : JC2556
JC2556           : PIQDNFDLTKFMGKWHDIAIGSTCPWMQRHKGDAAIGTLELQASEDKVSMTRSMKKHGKCEQISGDYELTATPGRLTYHIAKWGADAYVVDTNYDEYAIVMLSKQKTGEKTKSAKLYSRTMELPPTILEDFRRLVREQGMADDTIIIKQNKGECVPGTEPVAAE : HC_PLEPL
HC_PLEPL         : PTQENFDLTRFVGTWHDVALTSSCPHMQRNRADAAIGKLVLEKDGNKLKVTRTRLRHGTCVEMSGEYELTSTPGRIFYHIDRWDADAYVVHTNYDEYAIIIMSKQKTGENSTSLKLYSRTMSVRDTVLDDFKTLVRHQGMSDDTIIIKQNKGDCIPGEQVEEAP : BATTUFB

                 : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161- :
OrigSeq          : AVVKDFDISKFLGFWYEIAFASKMGTPGLAHKEEKMGAMVVELKENLLALTTTYYSEDHCVLEKVTATEGDGPAKFQVTRLSGKKEVVVEATDYLTYAIIDITSLVAGAVHRTMKLYSRSLDDNGEALYNFRKITSDHGFSETDLYILKHDLTCVKVLQSAAES :OrigSeq
cons             : --------HHH--EEEEEEE--------------EEEEEEEE-----EEEEEEE-------EEEEEEE------EEEEE------EEEEEE-----EEEEEEE-------EEEHHH--------HHHHHHHHHHHHH-------EEE----------------- :cons
dsc              : -------------EEEEEEE--------------EEEEEEE--------------------EEEEEE-------EEEEE------EEEEEE------EEEEEE------HHHHHHH--------HHHHHHHHHH---------EEEE----------HH----- :dsc
mul              : -------HHHHH--------------HHH---HHHHHEEEE-------HEEEH-------HHHHHHHH-------EEEE-------EEEEE-----EH-EHHH-------HHHEEE--------HHHHHHHHHHHHHH------EEE------HHH-------- :mul
nnssp            : -------HHHHH---EEEEE--------------EEEEEEEE-----EEEEEEE-------EEEEEEE-------EEEE-------EEEEE-----EEEEEEE-------EEE-----------HHHHHHHHHHHHH-------EEEE---------------- :nnssp
phd              : --------HHH--EEEEEEEEE---HHHH-----EEEEEEEEE----EEEEEEE------EEEEEEEEE-----EEEEEE-----EEEEEE-----EEEEEEEE------EEEEEEEE------HHHHHHHHHHHHH-------EEE----------------- :phd
pred             : ---------------EEEEE---------HHHHHHHHHH--------EEEEE-----------------------EEEE-----EEEEEEE-----EEEEEE---------HHHHHHH------HHHHHHHHHHHHH------EEEEEE------EEEE----- :pred
zpred            : ------HHEEEHHHHEEEEE-----HHHHHHHHHHHHEEEEE----HHHHHHH-----HHHHHHHHH-------EEEEE-------EEEEE--HHHHHHHHHH-------EEEEEEEEE-----HHHHHHHHHHHH---HHHHEEEE------EH--------- :zpred


access           : EEEEEBEBEEBBBEBBBBBBBBEEE-BEEEEEEBBBBBBBBBEEEEEBEBBBEB-EEEEBEEBBBBBEEEEEEEEBBBEBEEEEEEBBBBBBE-EEBBBBBBBEEEEEEEBBBBEB-BEEEEBEEEBBEEBEEBBEEEEBBEEBBBBBEEEEEBBEEEEEEEEE : access

PHD Rel          : 99997773132121346876414411211245632689999816982799995124787313678655147987267872678851799863743267788874489953346755423567775899999999986276542125334654324544345799 : PHD Rel
Pred Rel         : 00877760566666555696579997556867888856767778776566756578996657757766799998766667889976908856997658776556899976657778887999976787899999988779997669967999867576777000 : Predator Rel


dssp             : -------HHH--EEEEEEEEEE--------------EEEEEEE----EEEEEEEE----EEEEEEEEEE-----EEEEEE--EEEEEEEEEE----EEEEEEEE-------EEEEEEE------HHHHHHHHHHHH-----HHHEEE-----HHHHHHHHHHH- :dssp
define           : ------HHHHHH-------EEEEE--------EEEE--EEEEEE--EEEEEEEE----EEEEEEEEE-------EEEEEE--EEEEEEE-------EEEEEEE-------EEEEEEEEE----HHHHHHHHHHHHHHHH----EEEEE---HHHHHHHHHHHHH :define
stride           : -------HHH--EEEEEEEEEE------------E-EEEEEEE----EEEEEEEEE--EEEEEEEEEEE-----EEEEEE--EEEEEEEEEE----EEEEEEEE-HHH--EEEEEEEE-----HHHHHHHHHHHHHH----HHHEEE---EHHHHHHHHHHHH- :stride


Q3 values for 1epbb-1-DOMAK  View SS in Rasmol

	dssp	define	stride
phd	81.10	69.51	78.05
dsc	68.29	57.93	63.41
pred	59.76	54.88	54.88
mul	58.54	59.76	54.27
nnssp	73.17	68.90	70.12
zpred	54.27	48.78	50.00
cons	76.22	67.07	73.17