Results for 1gtmc-2-AUTO.1


1gtmc-2-AUTO.1    : GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIP : S44293
S44293            : RYVTLEGKVVAVQGVGHVAYELCKHLHNE.GAKLIVTDINK......ENAD..RAV..QEFG..AEFVHPD......KIYDVECDIFAPCALGAIINDETIERLKCKVVAGSANNQLKEEHGKMLEEKGIVYAP : ZMU93560
ZMU93560          : AVVTIAGQRFVIQGFGNVGSWAAQLISEA.GGKVIAISDVTGAVKNVGGLDIAEVVKHSAEN.GIKGFKGGDAIAPDSLLTEECDVLIPAALGGVINKDNANDIKAKYIIEAANHPTDPEADEILSKKGVLILP : YPCA_BACSU
YPCA_BACSU        : GFITIKGARVVVQGFGNAGSYLAKFMHDA.GAKVVGISDAYGGLYDPEGLDIDYLLDRRDSFGTVTKLFN.DTITNQELLELDCDILVPAAIENQITEENAHNIRAKIVVEAANGPTTLEGTKILSDRDILLVP : DHE4_UNKP
DHE4_UNKP         : .VFTFEGMRVAVSGSGNVAQYTIEKALEL.DARVITVSDSGG.LVDEDGFTLAHLAEIKNQRYRVADYAAERG.LTYWN..VPVDIALPCATQNELDL.EAARVIRNAVAEGANMPTTIQATDAFLDAGVLFAP : ATU56635
ATU56635          : AVVTIQGLTFVIQGFGNVGTWAAKLIHEK.GGKVVAVSDITGAIRNPEGIDINALIKHKDAT.SLNDFNGGDAMNSDELLIHECDVLIPCALGGVLNKENAGDVKAKFIVEAANHPTDPDADEILSKKGVIILP : DHE3_SULSO
DHE3_SULSO        : AVFTVEEARVIIQGFGNVGYYAGKFLSEM.GAKIVGVSDSKGGVINEKGIDVGKAIEIKEKTGSVINYPEGRKVTNEELLISDCDILIPAALENVINKFNAPKVKAKLIVEGANGPLTADADEIMRQRGIAVVP : THCGLUDEHY
THCGLUDEHY        : GVITLKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVAVSDTKGGIYNPDGLNADEVLAWKKKTGSVKDFPGATNITNEELLELEVDVLAPSAIEEVITKKNADNIKAKIVAELANGPTTPEADEILYEKGILIIP : DHE4_CORGL
DHE4_CORGL        : .VLTISGQKIIVSGSGNVATYAIEKAQEL.GATVIGFSDSSG.VHTPNGVDVAKLREIKEVRRRVSVYADEVEGATYWD..LKCDIALPCATQNELNGENAKTLADNFVAEGANMPSTPEAVEVFRERDIRFGP : DHE3_CHICK
DHE3_CHICK        : GISQFGDKTFAVQGFGNVGLHSMRYLHRF.GAKCVAVGEF...IWNPDGIDPKELEDYKLQHGTIMGFPKAQKLEG.SILETDCDILIPAASEKQLTKANAHKVKAKIIAEGANGPTTPQADKIFLERNIMVIP : A64500
A64500            : ..MDEEFKVVAITSSGAAIDEDGLDLLKAIEVKEKTGKIKN...YPEKGREMSSIDVIKEVDAVVVEVTPSNLETGD...PAKTHILESFKNKKHVVTANKGPLALCLIEEAKKHGVIFREASVGGAMIINLAK : A54038
A54038            : EFVFLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER.VAHAVALG.HTAVALEDVLS..................TPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEASDILHARGILYAP : DHPH_BACSH
DHPH_BACSH        : NFINLSGKTYAIQGLGKVGYKVAEQLLKA.GADLFVTDIHEN...VLNSIK..QKS..EELGGSVTIVKSD......DIYSVQADIFVPCAMGGIINDKTIPKLKVKAVVGSANNQLKDLHANVLNEKGILYAP : JC4328
JC4328            : NCIVLGGVTYAIQGLGKVGYKVAEGLLEE.GAHLFVTDINEQ...TLEAIQ..EKA..KTTSGSVTVVASD......EIYSQEADVFVPCAFGGVVNDETMKQFKVKAIAGSANNQLLTEHGRHLADKGILYAP : DHE4_CHLSO
DHE4_CHLSO        : ....LKGKRCLVSGAGNVAQYCAELLLEK.GAIVLSLSDSQG.VYEPNGFTLQAVQDMKKKNNRISEYKSDTA.VYVWELDCQVDIAFPCATQNEIDEHDAELLIKHYVVEGANMPSTNEAIHKYNKAGIIYCP : DHE4_HAEIN
DHE4_HAEIN        : ..FTFAGKVVSVSGSGNVAQYAIEKALSL.GAKVVTCSDSSG.VYDPNGFTLAALFDIKNTKRRVKDYAEQFG.LQYWE..VQVDIALPCATQNELELSDAQRLIKNLVAEGANMPTTIEATEALLAADVLFGP : BTU82241
BTU82241          : ...TLKGKVCLVSGSGNVAQYTIEKVIEL.GGKVVTCSDSDG.IYDPDGIDLDYIMELKNLYRRIREYAEKYG.CKYWG..EKCDIALPSATQNELNGDHARQLVANAVSEGANMPSTPEAVRVFQDAKILYAP : PRU82240
PRU82240          : ....LEGKTVLVSGSGNVAQYTIEKLLQL.GAKPVTCSDSNG.IYDPDGIDLAFIMELKNVKRRIKEYAEKYG.VKYWG..EKADIATPCATQDEINEAEAKTLIANAVSEGANMPTEPAAIKVFQDAKILYCP : DHE2_CLOSY
DHE2_CLOSY        : GVLTLVGKTVALAGFGNVAWGAAKKLAEL.GAKAVTLSGPDG.IYDPEGITINYMLEMRASGRKVQDYADKFG.VQFWG..QKVDIIMPCATQNDVDLEQAKKIVANYYIEVANMPTTNEALRFLMQQNMVVAP : BFU78108
BFU78108          : ...TIKGKTVAISGFGNVAWGAATKATEL.GAKVVTISGPDG.IYDPNGISIDYMLELRASGNIVAPYADEFPGSTFWE..VKADIALPCATQNELNGEDAKNLIDNCVGEISNMGCTPEAIDLFIEHKTMYAP : DHE3_DROME
DHE3_DROME        : .INQWGGKTFIVQGFGNVGLHTTRYLTRA.GATCIGVIEH...LYNPEGIDPKLLEDYKNEHGTIVGYQNAKPYEGENLMFEKCDIFIPAAVEKVITSENANRIQAKIIAEAANGPTTPAADKILIDRNILVIP : CEZK8294
CEZK8294          : ..VSLAGKTAIIQGFGNVGLHTHRYLHRA.GSKVIGIQEY...VYNPDGIHPKELEDWKDANGTIKNFPGAKNFDPFELMYEKCDIFVPAACEKSIHKENASRIQAKIIAEAANGPTTPAADRILLARDCLIIP : AF000967
AF000967          : MDVYLSSKVSVMSDFTPCVICTELEPRLS.ESKNG........VFNPDGIHPKELEDWRDENGTIKNFPKAKNFEPFELMYEPCDIFVPAACEKAIHKENANRIQAKIIAEAANGPTTPAADKILLERNCLIIP : RSPNGR2348
RSPNGR2348        : ....LKGASTVIQGFGNVGYHAARFLSEEDDARVTVLAERDG.VANPEGLSIEALKQHQIRTGSILGFDGAKSIAGD..VEQPCDVLIPAAMENAIHAENAERMKAHLVVEAANGPVTFEADEILRSRGVTILP : DHE2_CLODI
DHE2_CLODI        : GVITMKKAKIAVQGIGNVGSYTVLNCEKL.GGTVVAMAEWCKSIYNENGLDGQAMLDYMKEHGNLLNFPGAKRISLEEFWASDVDIVIPAALENSITKEVAESIKAKLVCEAANGPTTPEADEVFAERGIVLTP : DHE2_PEPAS
DHE2_PEPAS        : GTFTMEDAKIAVQGFGNVGTFTVKNIERQ.GGKVCAIAEWDRNLYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFWTKEYDIIVPAALENVITGERAKTINAKLVCEAANGPTTPEGDKVLTERGINLTP : TMGDH
TMGDH             : GIVTPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVP : DHE4_SYNY3
DHE4_SYNY3        : AVVTPENTTVAVQGFGNAGMVVAECLYQD.GYKVVAISDSQGGIYNEQGIDIPAVIDYKQRHRAICDLGENQQISNAELLALDVDVLIPAALENQITRDNADQVRARYIFEVANGPTTTAADDILASKGIYVFP : DHE4_HALSA
DHE4_HALSA        : GVVTLDETTVAVQGYGSVGANAARLLDKW.GATIVAISDVNGAMYEPDGIDTASVPSHDEEP.AVTTYADT.VISNEELLTLDVDVLIPAALGNVITKENAEAIAADLVVEGANGPTTSTADSILADRDVAVIP : PABS_STRGR

                  : 206-------216-------226-------236-------246-------256-------266-------276-------286-------296-------306-------316-------326-------336- :
OrigSeq           : GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIP :OrigSeq
cons              : -EEEE--EEEEEE-----HHHHHHHHHHH----EEEEE-------------HHHHHHHHHH---EE----------HHHHH----EEE--HHHHHH-HHHHHHHHHHHHHH-------HHHHHHHHH---EE-- :cons
dsc               : --------EEEEE------HHHHHHHHHH----EEEE--------------HHHHHHHH-------------HHHHHHHHH--------HHHHHHHHHHHHHHHHHHEEE---------HHHHHHHHHHH---- :dsc
mul               : --E-----EEEEE-------EHHHHHHHH---EEEEE--------------HHHHHHHH-----E-------------H-H---EEEE---HHHHHHH---HHHHHHHHHH--------HHHHHHH---EEEE- :mul
nnssp             : EEEEE---EEEEE-----HHHHHHHHHHH----EEEE--------------HHHHHHHHHH---EE----------HHHHH----EEE---------HHHHHHHHHHHHHH-------HHHHHHHHH---EEE- :nnssp
phd               : -EEEEE-EEEEE-----HHHHHHHHHHHH----EEEEEE------------HHHHHHHHHH--EEEEE-----------EEE---EEE--HHHHHH-HHHHHHHHHHHHHHHH-----HHHHHHHHH---EE-- :phd
pred              : -------EEEEEE-----HHHHHHHHHHH---EEEEEE-------------HHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH----- :pred
zpred             : -EE-H---EEEEEE---EEEEHHHHHHHHHHHHEEEEE------------HHHHHHHHHHH------------------HHHHHHHEEHHHHHHHHHHHHHHHHHHHEEHHH------HHHHHHHHHH-EEEEE :zpred


access            : EBBEBEEEBBBBEBBBEBBBBBBEBBBEEBEBEBBBBBEBEEBB-BBEBBEBEBBBEBEEEEEEBBEBBEEEEBBBBEBBEBEBEBBBBBBBEEBBEEEEBEEBBBEBBBEBBE-EE-EEBBEBBBEEBBBBBE : access

PHD Rel           : 95887121799816774379999999998198389998267874467564277899985544512241365654553101211120212215554413579999999999982768876788977653633319 : PHD Rel
Pred Rel          : 00787887890097898657788878876796690098899976709998678898887676666678998667779655656677757766768867668788887776567999977587887877660000 : Predator Rel


dssp              : --------EEEEE---HHHHHHHHHHHHHH--EEEEEEE--EEEE------HHHHHHHHHHH---------EEE-HHHH------EEEE------E-HHHH------EEE------E-HHHHHHHHH---EEE- :dssp
define            : H------EEEEEEE-HHHHHHHHHHHHH--EEEE--------EEEE----HHHHHHHHHHHH--------EEEEEHHHHHHH--EEEEEEEEEE------------EEEEE------HHHHHHHHHHHEEEEEH :define
stride            : --------EEEEEE--HHHHHHHHHHHHHH--EEEEEEE--EEEE------HHHHHHHHHHH---------EEE-HHHHHH----EEEE------E-HHHHH-----EEE------E-HHHHHHHHHH--EEE- :stride


Q3 values for 1gtmc-2-AUTO.1  View SS in Rasmol

	dssp	define	stride
phd	61.94	45.52	61.19
dsc	65.67	55.22	67.91
pred	66.42	50.75	65.67
mul	63.43	54.48	62.69
nnssp	72.39	56.72	73.13
zpred	58.96	52.99	62.69
cons	68.66	54.48	69.40