Results for 1hmpb-1-AUTO.1


1hmpb-1-AUTO.1    : SPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYSTGDIKVIGGDDSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA : HPRT_BACSU
HPRT_BACSU        : ......................MMKHDIEKVLISEEEIQKKVKELGAELTSEYQDTFPLAIGVLKGALPFMADLIKHID.........TYLEMDFMDVSSYGSSGEVKIIKDDTSVEGRDILIIEDIIDSGLTLSYLVELFRYRKAKSIKIVTLLDKPSGRKADIKADFVGFEVPDAFVVGYGLDYAERYRNLPYIGVLKPAVYES... : HPRT_LEIDO
HPRT_LEIDO        : .....MSNSAKSPSGPVGDEGRRNYPMSAHTLVTQEQVWAATAKCAKKIAEDYRSFPLYLLCVLKGSFIFTADLARFLADE......GVPVKVEFICASSYGTSGQVRMLLDRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPSGRKVEVLVDYPVITIPHAFVIGYGMDYAESYRELRDICVLKKEYYEKPES : S21474
S21474            : SPSVVISDDEPGYDLDLFCIPNHYVEDLEKVFIPHGVIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCTGDIKVIGGDLSTLTGKNVLIVEGIIDTGKTMQTLLSLVKRYNPKMVKVASLLVKRTSRSVGYRPDFVGFEIPDKFVVGYALDYNEYFRDLNHICVISETGKAKYKA : MAU88875
MAU88875          : .....MGVAQISSAITPAQPAELYPGDIKSVLLTAEQIQARIAELGREIGDNYRDADLLLITVLKGAVIFVTDLARAIP.........LPTQFEFMAVSSYGSSGVVRILKDDRDIQGRDVLIVEDVVDSGLTLSWLLRNLSTRHPRSLRVCTLLRKPDARGAHVDIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRVYQQ... : HPRT_PLAFG
HPRT_PLAFG        : FDPVFVNDDD.GYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVKPLFGEHYVRVKSYCTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKA : TGU09219
TGU09219          : IEPMYIPDNT.FYNADDFLVPPHCKPYIDKILLPGGLVKDRVEKLAYDIHRTYFGEELHIICILKGSRGFFNLLIDYLATIQKYSGRVPPFFEHYVRLKSYQTGQLTVLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVEKRTDRSNSLKGDFVGFSIEDVWIVGCCYDFNEMFRDFDHVAVLSDAARKKFEK : HGXR_TRIFP
HGXR_TRIFP        : ..................MTETPMMDDLERVLYNQDDIQKRIRELAAELTEFYEDKNPVMICVLTGAVFFYTDLLKHLD.........FQLEPDYIICSSYSSTGNLTISKDKTNIEGRHVLVVEDIIDTGLTMYQLLNNLQMRKPASLKVCTLCDKDIGKAYDVPIDYCGFVVENRYIIGYGFDFHNKYRNLPVIGILKESVYT.... : HPRT_LACLA
HPRT_LACLA        : ..................MLEKNLDKAIEKVLVSEEEIIEKSKELGEILTKEYEGKNPLVLGILRGSVPFLAELIKHID.........CHLETDFMTVSSYHSSGEVKLILDDTAVKGRDILIVEDIIDTGRTLKYLKELLEHRGAN.VKIVTLLDKPEGRIVEIKPDYSGFTIPNEFVVGFGLDYEENYRNLPYVGVLKPEVYNK... : HPRT_TRYBB
HPRT_TRYBB        : ..................MEPACKYDFATSVLFTEAELHTRMRGVAQRIADDYSNCPLVIVSVLKGSFVFTADMVRILGDF......GVPTRVEFLRASSYGSCGRVDVKADLCDIRGKHVLVLEDILDTALTLREVVDSLKKSEPASIKTLVAIDKPGGRKIPFTAEYVVADVPNVFVVGYGLDYDQSYREVRDVVILKPSVYETWGK : TRBHGPRTAS
TRBHGPRTAS        : ....................MPREYEFAEKILFTEEEIRTRIMEVAKRIADDYKGKPLVLISVLKGSFMFTADLCRALSDF......NVPVRMEFICVSSYGSSGQVRMLLDRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYGLDYDDTYRELRDIVVLRPEVYAEREA : HPRT_RHOCA
HPRT_RHOCA        : .....................MSQSGYVIDQMISAKAIAARVEALGAEITEAFKDTRLVVVGLLRGSFVFIADLIREIG.........VPCEVDFLEASSYGSTREVRVLKDRGIIGGRDVLVVEDIIDTGHTISKVMEMLRARAPRRIECCAMLDKPSRREVDVKARWTGFEIPDEFVVGYGLDYAQNHRNLPFIGTVRFTDPQK... : HPRT_HAEIN
HPRT_HAEIN        : .......................MKKHHVDVLISENDVHARIAELGAQITKFYQEKNLVVVGLLRGSFMFMADIVRQIN.........LPVEIEFMTTSSYGTNHDVRITKDDGDIKGKHVLIVEDIIDTGYTLEKVRDILNLREPASLTICTLLDKPSRREVEVPVEWVGFEIPDEFVVGYGIDYAQRHRNLGYIGKVVLEE...... : HPRT_ECOLI
HPRT_ECOLI        : ....................MVRDMKHTVEVMIPEAEIKARIAELGRQITERYKDSDMVLVGLLRGSFMFMADLCREVQ.........VSHEVDFMTASSYGTTRDVKILKDDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDYAQRYRHLPYIGKVILLDE..... : HPRT_VIBHA
HPRT_VIBHA        : ........................MKHTVEVMISEQEVQERIRELGKQITERYQGSDLVMVGLLRGSFVFMADLARAIE.........LTHQVDFMTASSYGSSRDVRILKDDDDIKGKDVLIVEDIIDTGNTLNKIREILSLREPKSIAICTLLDKPSRREVEVPVDYVGFAIPDEFVVGVGIDYAQKYRDLPFIGKVVPQE...... : S73496
S73496            : .........................MGIKSIIIDQKQVEAGCNAALKWCNEHFAGKQVIVLGILKGCIPFLGKLISQFT.........FDLQLDFVAVASYHQQEAPKIVLDSHDPKGKDILLIEDIVDSGRSIKLVLDLLHTRKAKSVILVSFIEKLKPREADIKVDYSCFKNQDEFLVGFGLDYQGFYRNLPYVGVFDPEDN..... : HPRT_MYCGE
HPRT_MYCGE        : .........................MGIKSIVINEQQIEEGCQKAVNWCNAKFNNKKVIVLGILKGCIPFLGKVISKFS.........FDLQLDFMAVASYHQKQPPKIVLDSHDPKDKDILLIEDIVDSGRSIKLVIDLLKTRHAKSITLISLIEKIKPKAFDINIDFSCFKVKDNFLVGFGLDYDGFYRNLPYVGVFEPDNP..... : HPRT_SCHMA
HPRT_SCHMA        : ADCVVIEDSFRGFPTEYFCTSPRYDECLDYVLIPNGMIKDRLEKMSMDIVDYYEACSITLMCVLKGGFKFLADLVDGLERTVRARGIVLPMSVEFVRVKSYVIHEPILTGLGPSEYKDKNVLVVEDIIDTGKTITKLISHLDSLSTKSVKVASLLVKRTSPRNDYRPD.VGFEVPNRFVVGYALDYNDNFRDLHHICVINEVGQKKFSV : S76559
S76559            : ........................MAAQIIEILSPEEIRRTLTRLASQVIEKNSDLELVLLGIYTRGVPLAHQLAQQIEMLEQ.....VKVPVGAIDVTLYRRIKTRTPAKTPLSLTGKRVVLVDDVIYKGRTIRAALNAVTEYGRPQVIRLLTLVDRGHRELPIHPDFVGKILPTAAEEQVKVYLQD.PDGRDTVELIKG........ : LPPYRBSOP
LPPYRBSOP         : ...........................MAREVVDAMTMRRALTRITYEIIEQNKGVNLVFIGIKTRGIFLAQRLAQRLKQLEG.....VDVPVGSLDITLYRAVDVAGQAKLPVDINGKHVILVDDVLFTGRTVRAALDALMDHGRPAKISLAVLVDRGHRELPIRPDFIGKNIPTALDEQVSVALEE.HDGHDGISIEKLEE...... : PYRR_BACCL
PYRR_BACCL        : ..........................MQKAVVMDEQAIRRALTRIAHEIIERNKGIGCVLVGIKTRGIYLARRLAERIEQIEG.....ASVPVGELDITLYRVKTDDHEPLVPFPVTERNVILVDDVLFTGRTVRAAMDAVMDLGRPARIQLAVLVDRGHRELPIRADFVGKNVPTSRSELIVVELSE.VDGIDQVSIHEK........ : PRTZ_HUMAN

                  : 4---------14--------24--------34--------44--------54--------64--------74--------84--------94--------104-------118-------129-------139-------149-------159-------169-------179-------189-------199-------209------ :
OrigSeq           : SPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYSTGDIKVIGGDDSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA :OrigSeq
cons              : ---EEEE---------------------EEEEE--HHHHHHHHHHHHHHHHHH----EEEEEE-----HHHHHHHHHHHHH----------EEEEEEE-------EEEEE----------EEEEEE-----HHHHHHHHHHHH-----EEEEEEE---------EEEEEEE------EEEE-------------EEEEE---------- :cons
dsc               : ---EEE---------EEEE----------EEE-------HHHHHHHHHHHHH-----EEEEEE-----EEEHHHHHHHHH-----------EEEEEEE------EEEEEE---------EEEEEEE------HHHHHHHHHH------EEEEEE----------EEEE---------EEEE-------------EEEEE---------- :dsc
mul               : -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH-----HEEEEEE----EEHHHHHHHHHH-------------H-EEEE--------EEEE---------EEEEEHHHH-----HHHHHHHHHH-----HHEEEHHHH-----------EE-------EEEEE-------------EEEEE--------- :mul
nnssp             : --EEEEE-----------------------EE--HHHHHHHHHHHHHHHHHHH----EEEEEEE----HHHHHHHHHHHHHHH--------EE-EEEE---------EE-----------EEEEE-------HHHHHHHHHHH-----EEEEEEE----------------------EEE---------------EEEE---------H :nnssp
phd               : ---EEEE---------------------EEEEE--HHHHHHHHHHHHHHHHHH----EEEEEE----HHHHHHHHHHHHHH--------EEEEEEEEEEEE----EEEEE----------EEEEEE-----HHHHHHHHHHHH-----EEEEEEEE------EEEEEEEEEEEEE-EEEEEEE-----------EEEEEE--------- :phd
pred              : ---EEE----------EEE---------EEEEE--HHHHHHHHHHHHHHHHHH----EEEEEEE----HHHHHHHHHHHHHH----------------------EEEEEE---------EEEEEEE-----HHHHHHHHHHHH-----EEEEEEE-------------EEE------EEEE--------------EEEE---------- :pred
zpred             : -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHEEEEEE--EEEEHHHHHHHHH------------HHHHHEE-------EEEEEE----HHHHEEEEEEEEHHHHHHHEEHHHHHHHH---HHEEEEEEH------EEEEEEEEEE----EEEEEEEEEEE--------EEEE---------- :zpred


access            : EEBBBBBEE-EB-EBEBBBBBEEB-EBBBEBBBBEE-BEE-BEEBBEEBBEEBEE-EBBBBBBBEBBBBBBBEBBEBBEEBEE-EE-BBBBBBEBBBBBB-BBEEBBEBBEE-EEBEBEBBBBBEBBBEBB-BBEBBBEBBEEEEEEBBBBBBBBEEEEEEEBEBEBEBBBBEBEEBBBBBBBBEBBEBBEEBEBBBBBEEEBEEE-EE : access

PHD Rel           : 99277734887778865547753312122565141447999999999999986399668998456625689999999999623668963134678999742477425664168876896368986123241369999999997489922699798557898512122113433212688764302211235675056873155445789 : PHD Rel
Pred Rel          : 00000000999999778860099877756880667768999999999999776799668998066985677888999988867777688655556766778888787955987768988500006665676657799999988099766687086589999866587776666799700096676777587886609977888787000 : Predator Rel


dssp              : ---EE-------E--------HHH---EEEEEE-HHHHHHHHHHHHHHHHHHH----EEEEEE----HHHHHHHHHHHHHHH--------EEEEEE--------------------E--EEEEEEEEE---HHHHHHHHHHH---E-EEEEEEEEEE-----------EEEEEE----EEE--E-E--E------EEEE-HHHHHH--- :dssp
define            : --EEEE-----------EEEE-----EEEE---HHHHHHHHHHHHHHHHHHH---EEEEEEEE----HHHHHHHHHHHHHHHH---EEEEEEEEEEE-----HHHHHH----------EEEEEEEEEEEEHHHHHHHHHHHHHHH--EEEEEE-EEEE----EEEEEEE-EEEE--EEEE--------------EEEE-HHHHHHHH-- :define
stride            : ---EE-------E--------HHH---EEEEEE-HHHHHHHHHHHHHHHHHHH----EEEEEE----HHHHHHHHHHHHHHHH-------EEEEEE--------------HHH------EEEEEEEEE---HHHHHHHHHHHHH---EEEEEEEEEE-----------EEEEEE----EEE--E-E--E------EEEE-HHHHHH--- :stride


Q3 values for 1hmpb-1-AUTO.1  View SS in Rasmol

	dssp	define	stride
phd	76.08	71.29	75.12
dsc	69.86	65.07	67.94
pred	78.47	66.03	77.51
mul	68.90	58.85	67.94
nnssp	76.56	66.51	76.56
zpred	62.68	59.81	62.68
cons	78.47	69.38	77.51