Results for 1kinb-1-AUTO.1


1kinb-1-AUTO.1    : MPTLLRVYIDGPHGMGKTTTTQLLVALDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQCGGSWREDWGQLAGPRPHIGDTLFTLFRAPELLAPNGDLYNVFAWALDVLAKRLRSMHVFILDYDQSPAGCRDALLQLTSGMVQTHVTTPGSIPTICDLARTFAREMGE : KITH_HSVB5
KITH_HSVB5        : ALRVVRVYLDGAHGLGKTTTGRALAAAPVLFFPEPMAYWRTMFPTDALSGILAASARRAAAQADADAAGLVAY.YQARFAAPYLVLHARVAALLAPPEPA...DVVTLVFDRHPLAACLCYPFARYCLREINAEDLLALAATAPLEAPGANLVVCTLPPAEQQRRLAARARPGDRADAGFWPPLRNAYALLANTCAFLGAGGAWRDGWDALGWPAPALRDTLFAALKCRELYPGGGALPAVHAWALDALADRLAALEVF.MDVSAAPDACAAAVLGMRPAMR.RRRADGAAGATLADLARRFAREMTP : KITH_HSVEB
KITH_HSVEB        : QVTIVRIYLDGVYGIGKSTTGRVMASA.TLYFPEPMAYWRTLFEADVISGIYDTQNRKQQGDLAADDAASITAHYQSRFTTPYLILHDHTFGLFGGDS...TRPDLTVVFDRHPVASAVCFPAARYLIGDMSMCALIAMVATLPREPQGGNIVVTTLNVDEHVRRLRTRARIGEQIDMKLIATLRNVYSMLANTSNFLRSGRVWRDGWGELPLESPELSDTLFAMFKTPELLDDRGVILEVHAWALDALMLKLRNLSVFCADLSGTPRQCAATVESLIPLMSSTLSDSESASSLERAARTFNAEMGV. : KITH_HSV1K
KITH_HSV1K        : MPTLLRVYIDGPHGMGKTTTTQLLVALDIVYVPEPMTYWQVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQGGGSWREDWGQLSGPRPHIGDTLFTLFRAPELLAPNGDLYNVFAWALDVLAKRLRPMHVFILDYDQSPAGCRDALLQLTSGMVQTHVTTPGSIPTICDLARMFAREMGE : HVATK
HVATK             : EVKICRFYIDGCYGTGKSTAALNFIKL.VYYFPEPMAFWRIILETDIVQGIYSVQDRKLRGELSLNDASLITAQLQTKFSTPYILLHSNISKFFGEN....GIPEVIFIFDRHPIASIVCFPLARYLIGDMTLESVISIITTLPKETPGGNLVITDLSEDELLQRLKKRSRKGEKIDLNLLHALQNVYTMLINTKRFLELN.DWYKEWDKLPVKPS.INDTLFRVFKTSSLVKKNRSPFIIYKWALEKLVDSLENLKIFKVSFQGSPDVCVSNIREIISHMTITSTSKRFLQNLIETSKSFSKEMYCD : S63520B
S63520B           : LPTLLRVYIDGPHGVGKTTTSAQLMEANIVYVPEPMTYWQVLGASETLTNIYNTQHRLDRGEISAGEAAVVMTSAQITMSTPYAATDAVLAPHIGGEAVGAPPPALTLVFDRHPIASLLCYPAARYLMGNMTPQAVLAFVALMPPTAPGTNLVLGVLPEAEHADRLARRQRPGARLDLAMLSAIRRVYDLLANTVRYLQRGGRWREDWGRLTGSLPRIEDTLFALFRVPELLAPNGDLYHIFAWVLDVLADRLLPMHLFVLDYDQSPVGCRDALLRLTAGMIPTRVTTAGSIAEIRDLARTFAREVGG : KITH_HSVTF
KITH_HSVTF        : PPTLTRVYLDGPFGIGKTSILNAMPDH.ILKVYEPMKYWRCQS.TDLVVAANETPERRRGGALSRFQSDMIMASIQARFADPYLLFHERLSSKCRGKIEI..TPAIILMLDRHPVAAILCFPITRYLLGEYSLEMLISSIIRLPLESPGCNLTVTILPDEEHVNRICSRDRPGETADRNMLRTLNAVYASLVDTVKYANLTCSWEMEWLGLPWTRMPLDRTLLAIFKRKELCSENGELLTQYSWILWGLLTKLHTINVELFDISGSRRECATL................................... : KITH_VZV4
KITH_VZV4         : KMGVLRIYLDGAYGIGKTTAAEEFLHHRILLIGEPLSYWRNLAGEDAICGIYGTQTRRLNGDVSPEDAQRLTAHFQSLFCSPHAIMHAKISALMDTSTSD.KEPYKIMLSDRHPIASTICFPLSRYLVGDMSPAAPPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKRARPGETVNLPFVMVLRNVYIMLINTIIFLKTN.NWHAGWNTLSFEVPGIEDTLFAVLKLPELCGEFGNILPLWAWGMETLSNCLRSMSPFVLSLEQTPQHAAQELKTLLPQMTPANMSSGAWNILKELVNAVQDNTS.. : HSMGHH
HSMGHH            : SAQLIRVYLDGPLAIGKTSMLNEVPSH.VLKVFEPLKYWRRYF.TDLVAAVNDASERRRRGELSLFQSSMIVMALQAKFADPFIVLHERISSKCHQLAGT..NPSLILIVDRHPVSATVCFPIARHLIGDCSLEMLISAITRLPHEPPGCNLVIAHLPDEEHLKRLSARNRAGETTDVRMLRALNAAYSALADTVAYANCICEWETEWMQLPWSRVSLQHTLLPIFKRKELCSEDGSLLTVYGWILWGMLMKLRNINVERLDVSDSVQKCAEYLMDSMAERLITHMSWNDVFEIEADVQAFNKEMDI. : KITH_HSVMD
KITH_HSVMD        : SAQLIRVYLDGSMGIGKTSMLNEIPTH.VLKVFEPMKYWRYYF.TDLVTTVNDTCDRRRRGEFSLFQSSMIVTALQSKFADPYLVFHERLSSKCHRITGT..NPSLILILDRHPISATVCFPIARHLTGDCSLEMLISMIIRLPQEPPGCNLVIVDLHDEEHVSRLSSRNRTGEKTDLLMLRALNAVYSCLVDTIMYANHICEWESEWLDLPWSRVSLHHTLLAIFKRRELCAEDGSLSTTHAWILWGLLMKLRNINVERFNITGSTTKCVESFMDTMSERLVTHSSWNDAFEIEADVLAYNKEMAM. : KITH_ILTVT
KITH_ILTVT        : FRRVVLLYVDGPFGVGKTVTAKTLMQMCRLYLAEPMQAWRQWFGADMIKEINEIQTLKASGKLECREASPVAVAVQMTIAAPLRIMNHVIYNYLGSERCY.GPDDVLFLVDRHPLAACLCFPVAQYLSGALEFGDLITLLSGIPDIPTHSNIVLMDLDICEQARRIIQRGRPGETVDWTYLCALRNSYICLMNTTTYLQRTSYPALLKEQEALINPSIDQTLFAILAFD.QQNVHGELKTVLSFVVQKLATVLKNLCIFYLPAHGTPEACALKCLEFAETASSLTTKRAAIASLIDAVERYNADMGS. : CHU25806
CHU25806          : PVCITRVYLEGAFGIGKTTTALAFVNG.VFFIGEPMMYWRNMAGDDAINGIYGTQVRRKNGEISDNDAQRLTAYFQGLFCSPHSMLHARILHLTVQNPNN.FN.NPVAIFDRHPVASNVCFPISRYVVGDMTPATLPGFLFAVSEEPEGTNLIVCTVSLTNHLTRITNRSRSGEIIDVQFILVLRNVYIMLINTIRYLQAKSDWLIDWFKLPFENPVIENTLFAVFKIPELCDSYGELLDLWKWGMGVLANRLKNISCYVLSLDTTPTDAVIELCKQLPNMTVSYLVPGGLAYLQEMSDSVNL..... : KITH_HSVF
KITH_HSVF         : QVNTVRIYIDGAYGIGKSLTAKYLVRAYTYYFPEPMLYWRSLFETDVVGGIYAVQDRKRRGELSAEDAAYITAHYQARFAAPYLLLHSRLSTITGYQK...EHPDVTLIIDRHPLASLVCFPLARYFVGDMTLGSVLSLMATLPREPPGGNLVVTTLNIEEHLKRLRGRSRTGEQIDMKLIHALRNVYMMLVHTKKFLTKNTSWRDGWGKLKITESDLCDTLFSVFKARELSDQNGDLLDMHAWVLDGLMETLQNLQIFTLNLEGTPDECAAALGALRQDMDMTFIAACDMHRISEALTIYH...... : KITH_PRVN3
KITH_PRVN3        : .MRILRIYLDGAYDTGKSTTARVMALG.ALYVPEPMAYWRTLFDTDTVAGIYDAQTRKQNGSLSEEDAALVTAHDQAAFATPYLLLHTRLVPLFGPAV.....PEMTVVFDRHPVAATVCFPLARFIVGDISAAAFVGLAATLPGEPPGGNLVVASLDPDEHLRRLRARARAGEHVDARLLTALRNVYAMLVNTSRYLSSGRRWRDDWGRAPRDDPELQDTLFGAYKAPELCDRRGRPLEVHAWAMDALVAKLLPLRVSTVDLGPSPRVCAAAVAAQTRGMEVTES..AYGDHIRQCVCAFTSEMGV. : KITH_HSVB6
KITH_HSVB6        : ALRVVRIYLDGAHGLGKTTTGRALAAA.VLFFPEPMAYWRTMFGTDALSGILAASARCAAASARARRAGAPRRRLPGQVRGPVLNFARARVRAAAPPGPA....TVTLVFDRHPVAACLCYPFARYCLREINAEDLLMLAAAMPPEAPGANLVVCTLPPAEQQRRLAARARPGDRADAGFLVAVRNAYALLVNTCAFLRAGGTRWSGRTQMHW..AGLRDTLFAALKCRELYPGGGTLPAVHAWALDALAGRLAALEVFVLDVSAAPDACAAAVLDMRPAMQ.AACADGAAGATLATLARQFALEMA. : KITH_HSVMR
KITH_HSVMR        : TSRILRVYLDGPHGVGKSTTAEALVARIRSMLQEPMAYWRSTFASDAITEIYDTQHRLDSNEITAAEAGAFMTSLQLHMGTPYALLEEAMRPHVGRELAEPQRRDFVLVVDRHAVASMVCYPLARFMMGCVSLRSVASLISHLPPPLPGTNLVVASLDFREHAARLRARARPGERLDLTMMAAIRNAYAMLANTSRYLLSGGDWRRDWGSLPVDEPGLADTLFAALKVPEFLDARGYPRAAHAWTLDILANRIRALRVYTLDLTGPPEACAAAFRRLCAGLVLTEGSHPGALCELKRAAAAYAREMSV : KITH_HSVBH
KITH_HSVBH        : MSRLLRVYVDGPHGLGKTTAASRLASEDAIYLPEPMSYWSGAGEDDLVARVYTAQHRMDRGEIDAREAAGVVLGAQLTMSTPYVALNGLIAPHIGEEPSPATPPDLILIFDRHPTASLLCYPLARYLTRCLPIESVLSLIALIPPTPPGTNLILGTAPAEDHLSRLVARGPPGELPDARMLRAIRYVYALLANTVKYLQSGGSWRADLGSEPPNNPGGHNTLLALIHG..AGATRG.CAAMTSWTLDLLADRLRSMNMFTWTTARSLCGSDEELAPLDAVHRDPKTRISSR................. : SODF_PSEAE

                  : 46--------56--------66--------79--------89--------99--------109-------119-------129-------139-------149-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------284-------294-------304-------314-------324-------334-------344-------354-------364----- :
OrigSeq           : MPTLLRVYIDGPHGMGKTTTTQLLVALDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQCGGSWREDWGQLAGPRPHIGDTLFTLFRAPELLAPNGDLYNVFAWALDVLAKRLRSMHVFILDYDQSPAGCRDALLQLTSGMVQTHVTTPGSIPTICDLARTFAREMGE :OrigSeq
cons              : ---EEEEEE--------HHHHHHHHH--EEEE--HHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHH---HHHHHHHH--H-------------EEEEE--------EE--HHHHHH----HHHHHHHHHH--------EEEEEE---HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH---E--------------HHHHHHHHH----------HHHHHHHHHHHHHHHHH--HEEEEE-----HHHHHHHHHHHHHH--EE-----HHHHHHHHHHHHHHH--- :cons
dsc               : ----HHEEE--------HHHHHHHHH--HH----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HH-----------HHHHHHH------HH---HHHHHH----HHHHHHHHH----------EEEE---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--------HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHH--- :dsc
mul               : --EEEEEE-----------EEEEHHHH-HHE----HHHHHHH----HEE--EH-----------HH-HHHHHHHHH------E-HHHHHHHH-------------EEEEE-----HHEEEE----EEH-----HHHHHHHH----------EEEEE---H-HHHHHH--------HHHHHHHHHH--HHHHH--EEEE--------------------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHEEEE--------HHHHHHHHH-------------HHHHHHHHHHHHHH--- :mul
nnssp             : ---EEEEEE-----------HHHHHHHH-------------------HHHHH------------HHHHHHHHHHHHH----------------------------EEEEE----------------------HHHHHHHHH----------EEEEE---HHHHHHHHHH--------HHHHHHHHHHHHHHH---------------------------HHHHHHHH-----------HHHHHHHHHHHHHHHH---EEEE------HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH-- :nnssp
phd               : --EEEEEEEE-------HHHHHHHHH--EEEE--HHHHHHHH--HHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--HHHHHHHHHHH-------------EEEEE--------EE-HHHHHHHH---HHHHHHHHHH--------EEEEEE---HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH---E--------------HHHHHHHH-----------HHHHHHHHHHHHHHHHH--EEEEEE-----HHHHHHHHHHHHH--EEE-----HHHHHHHHHHHHHHH--- :phd
pred              : ------------------HHHHHHHHH-EEEE---------------EEEHHHHHHHH------HHHHHHHHHHHHHH----EEEE-------------------EEEEE-----EEEEE------------HHHHHHHHHH--------EEEEEE----HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHEEEE------HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--- :pred
zpred             : -EEEEEEEEEEE--EEEEEEEHHHHHH-EEEEEEHHHHHH------HEEEEEEEE---------HHHHHHHHHHHEEE---EHHHHHHHH---------------EEEEEHHH--HEEEEEEEHEEEE---HHHHHHHEEEEE------EEEEEEE--HHHHHHHHH--------HHHHHHHHHHHEEEEEEEEEEEE--------------------HHHHHHHHHH----------EEHHHHHHHHHHHHHHHHEEEEE-------HHHHHHHHH-----------------HHHHHHH------- :zpred


access            : EEEBB-BBBEBBEEBEEEBBBEBBBBBBBBBBBEBBE-B-BBBBEEBBBBBBBBEEEEEEEEBBBEEBBBBBBBBEBEBBBBBBBBBBBBBB-BBEE-EEEE-EBBBBBBEEBEBBBBBBBBBBEBBBBEBBBEBBBBBBBBBEEE-EE-EBBBBBBEEEE-BEEBBEEEEEEEEBEBBBBBBB-BBBBBBBEBBEBBEEE-EB-EEBEEBE-E-EEBEEBBBBBBEBEEBBEEEEEBBBBBBBBBEBBBEEB-BBBBBBBEBEEEEEEBBBBBBEBBBEBBBBEBBEEBBBBBBBBBBEBBBEE-EE : access

PHD Rel           : 95699999726778752367665332121213441345787412146756421354213553123467888999767524513421353221257888999999379998278664112311455454224179999999744888899858997279658999999427898541168999999999999998897563752111235688899842268988641122135588504678999999999983262678742899469999999997412312014421369999999997432499 : PHD Rel
Pred Rel          : 00780096589999878068878888580877877665557566766667586577566776667778777788888868866566858666878877798999989097799867088066665666567668889877609900999060099788778799999870999975688997989899878868777578997656776886999888778877786585878999866888888889999998855688767999777888999998776555558898857899899997777000 : Predator Rel


dssp              : --EEEEEEE-------HHHHHHHHH----EEEE---HHHHH------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH---EEEE---------EEEEEE--HHHHH-HHHHHHHH-----HHHHHHHH---------EEEEEEE--HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHH--------HHH-HHHHH-----E-----E-HHHHHHHHHHHHHH---EEEEEE------HHHHHHHHHH-----EEE----HHHHHHHHHHHHHHH :dssp
define            : EEEEEEEEEEE----HHHHHHHHHHHH-EEEEEEEHHHHHHH----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-EEEEEEE-----EEEEEEEE-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH------EEEEEEEEEHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH------EEEE---HHHHHHH-----------HHHHHHHHHHHHHHHHEEEEEEEE---HHHHHHHHHHHHHHEEEEEEEE--HHHHHHHHHHHHHHHH :define
stride            : --EEEEEEE-------HHHHHHHHHH---EEEE---HHHHHH-----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH--EEEE---------EEEEEE--HHH---HHHHHHHHH----HHHHHHHHH--------EEEEEEE--HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--------HHH-HHHH------E-----E-HHHHHHHHHHHHHH---EEEEEE------HHHHHHHHHHH----EEE----HHHHHHHHHHHHHHH :stride


Q3 values for 1kinb-1-AUTO.1  View SS in Rasmol

	dssp	define	stride
phd	71.75	69.81	71.10
dsc	67.21	64.94	66.56
pred	64.94	59.74	63.64
mul	61.04	57.14	59.74
nnssp	62.66	54.55	61.36
zpred	55.19	53.25	53.57
cons	71.75	68.83	71.10