Results for 1rbp


1rbp         : ERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYC : APD_RABIT
APD_RABIT    : FHLGRCPTPPVQENFDVHKYLGRWYEIEK.IPVSFEKGNCIQANYSLMENGIKVLNQELRDGTVNQIEGQATQSN....LTEPAKLGVKFFQLMPTAP.....YWVLATDYENYALVYSC..TTIIWLFHMDHVWILGRNRY.LPPETVTYLKDILTANNIDIEKMTVTDQVNC : RETB_PIG
RETB_PIG     : ERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYDTYAAQYSCRLQNLDGTCADSYSFVFARDPHGFSPEVQKIVRQRQEELCLARQYRLITHNGYC : S22400
S22400       : FYPGYCPEVKPVDDFDLSAFAGAWHEIAKLPLENENEGKCTVAEYKYDGKKSVYNSFVINVKEYMEGDLEIAPDA..KLTKQGKYVMTFKFGPRVVVQVP....WVLATDYKNYAINYNCN.YHPDKKAHSIHAWVLSRNLEGNTKEVVDNVLKTFSHLIDASKFMSEFSEAAC : RET1_ONCMY
RET1_ONCMY   : .SDCQVSNIQVMQNFDRSRYTGRWYAVAKKDPVGLFLLDNVVAQFSVDESGKVTATAHGRVIILNNWEMCANMFGTFEDTPDPAKFKMRYWGAASYLQTGNDDHWVIDTDYDNYAIHYSCREVDLDGTCLDGYSFIFSRHPTGLRPEDQKIVTDKKKEICFLGKYRRVGHTGFC : S23204
S23204       : .SDCQVSNIQVMQNFDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIILNNWEMCANMFGTFEDTPDPAKXXXXYWGAAAYLQSGNDDHWVIDTDYDNYAIHYSCREVDLDGTCLDGYSFIFSRXXXXXXXXXXXXXXXXXXELCFLGKXXXVSHTGFC : PURP_CHICK
PURP_CHICK   : AQTCAVDSFSVKDNFDPKRYAGKWYALAKKDPEGLFLQDNISAEYTVEEDGTMTASSKGRVKLFGFWVICADMAATVPDPTTPAKMYMTYQGLASYLSSGGDNYWVIDTDYDNYAITYACRSLKEDGSCDDGYSLIFSRNPRGLPPAIQRIVRQKQEEICMSGQFQPVLQSGAC : RETB_XENLA
RETB_XENLA   : EKNCRVDNFEVMKDFNKERYAGVWYAVAKKDPEGLFLLDNIAANFKIEDNGKTTATAKGRVRILDKLELCANMVGTFIETNDPAKYRMKYHGALAILERGLDDHWVVDTDYTTYAITYACRRRNLDGTCRDSYSFVFSRDINGLPSESQRIVRRRQEQLCLDRKYRVVVHNGYC : RETB_CHICK
RETB_CHICK   : ERDCRVSSFKVKENFDKNRYSGTWYAMAKKDPEGLFLQDNVVAQFTVDENGQMSATAKGRVRLFNNWDVCADMIGSFTDTEDPAKFKMKYWGVASFLQKGNDDHWVVDTDYDTYALHYSCRELNEDGTCADSYSFVFSRDPKGLPPEAQKIVRQRQIDLCLDRKYRVIVHNGFC : APD_HUMAN
APD_HUMAN    : FHLGKCPNPPVQENFDVNKYLGRWYEIEK.IPTTFENGRCIQANYSLMENGIKVLNQELRDGTVNQIEGEATPVN....LTEPAKLEVKFSWFMPSAP.....YWILATDYENYALVYSC..TCIIQLFHVDFAWILARNPN.LPPETVDSLKNILTSNNIDVKKMTVTDQVNC : LACA_CANFA
LACA_CANFA   : .....IVVPRTMEDLDLQKVAGTWHSMAM.AASDISLLDSETAPLRVYIQERPTPQDNLE.IVLRKWEDGRCAEQLAEKTEVPAEFKINYVEENQIFL........LDTDYD..NYLFFC.EMNADAPQQSLMCQCLARTLEVDNEVMEKFNRALKTLPVHMQLLNPTQAEEQC : D87752
D87752       : SPIQPEDNIQIQENFDLQRIYGKWYDIAIGSTCKWLKHHKEKFNMGTLELSDGETDGEVRVNTRMRHGTCSQIVGSYQKTETPGKFDYFNARWGTTIQN.....YIVFTNYNEYVIMQMR...KKKGSETTTTVKLYGRSPD.LRPTLVDEFRQFALAQGIPEDSIVLPNNGEC : JC2556
JC2556       : VPVLPEPLFPIQDNFDLTKFMGKWHDIAIGSTCPWMQRHKGDAAIGTLELQASGTEDKVSTRSMKKHGKCEQISGDYELTATPGRLTYHIAKWGADVD.....AYVVDTNYDEYAIVMLS..KQKTGGEKTKSAKLYSRT.MELPPTILEDFRRLVREQGMADDTIIKQNKGEC : JS0198

             : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171- :
OrigSeq      : ERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYC :OrigSeq
cons         : ----------------------EEEEEE-------EE----EEEEEE------------EEEEE------EE------------EEEEEEEEEEEEEE-----EEEEEE----EEEEEEEEE----------EEEEEE-------HHHHHHHHHHHHHHH-----EEEEE---- :cons
dsc          : ----------------------EEEE--------EEE----EEEEEE-----EEE----EEEEE---EEEEEEE----------EEEEEEEEEEEE-------EEEEE-------EEEEE-------------EEEEE---------HHHHHHHHHHHHHH-----EEEE---- :dsc
mul          : -----------HH---HHH----HHHHH-------HHH--HHH---------HHH------EE-----HHHH------------HHHHH------E--------EEEE-------EEEEE-------------EEEE-----------HHHHHHHHHHHHHH---EEE------ :mul
nnssp        : ----------------------HHHHHH-------EE------EEE--------------EE-------HHHHH-----------EEE----HHHHHH-----EEEEE-----HHHHHHHHH-----------EEEE--------HHHHHHHHHHHHHH------EEE------ :nnssp
phd          : ----------------------EEEEEEE------E---EEEEEEEE---------EEEEEEEE------EE------------EEEEEEEEEEEEEE-----EEEEEE----EEEEEEEEEE---------EEEEEEE------HHHHHHHHHHHHHHH-EEEEEEEEE---- :phd
pred         : --------EEEE------------EEEE--------------------------------EEEE---------------------------------------EEEEEE----EEEEE--------------EEEEEE---------HHHHHHHHHHHHHHHHH--EEE----- :pred
zpred        : --------EEEHHHHHH-----HHHHHH----HHHHHHHHHHHEEHHHH----HHHHHHEEEE-----HHHH---------HHHHHHEE---------------EEEEEE----EEEEE-------------EEEEEEE-------HHHHHHHHHHHHHHHHH-EEEE-----E :zpred


access       : EEEBEBEEBEB-EEBEEBEBBBEBBBBBEE-EEEBBBBEEBBBEBEBEEEEEEEBEBEB-B-BBBEBEBBBEBBBBBEE-EEEBEBEBEBBBBBBBBEEE-EEBBBBBBE-EEBBBBBBBEEBEEEBEB-EBBBBBBBE--EEBEEEBBEBBEE-BEBBBBBEEBBBBBBEEEB : access

PHD Rel      : 988754776454345521223325556632677411144123577741268632211256888435542122124343688867157766433878657889647988464522578654452357542432267887178999928999999997663201113557423669 : PHD Rel
Pred Rel     : 009796855555677776666667558578990876788676555688879776767765565577765556666667899077655776668556678999859999899706685555565799887777788887799909977578799899999888768785778000 : Predator Rel


dssp         : -----HHH-------------EEEEEEEEE--------EEEEEEEEE-----EEEEEEEEEEE---EEEEEEEEEEEEE-----EEEEEEEE-------EEEEEEEEEE----EEEEEEEEEE-----EEEEEEEEEE-------HHHHHHHHHHHHH-------EE------- :dssp
define       : -------EEEEE---HHHHHHEEEEEE-EEEEE--EEEEEEEEEEE----EEEEEEEEEEEEE--------EEEEEEEEEE----EEEEEE-----EEEE-EEEEE--------EEEEEEE------------EEEEEE-----HHHHHHHHHHHHHHHH---EEEEEEEE--- :define
stride       : -----HHH-------------EEEEEEEEE--------EEEEEEEEE-----EEEEEEEEEEE---EEEEEEEEEEEEE-----EEEEEEEE-------EEEEEEEEEE----EEEEEEEEEE-----EEEEEEEEEE-------HHHHHHHHHHHHHH------EE------- :stride


Q3 values for 1rbp  View SS in Rasmol

	dssp	define	stride
phd	72.99	66.09	73.56
dsc	69.54	61.49	70.11
pred	56.90	54.02	57.47
mul	51.15	49.43	51.72
nnssp	56.32	51.15	56.90
zpred	48.28	48.85	48.85
cons	71.26	63.22	71.84