Results for 1rlr-2-JAC


1rlr-2-JAC    : QFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELDELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDDIDDLSNFQL : RIR1_YEAST
RIR1_YEAST    : .MSSCFLVAMKEDSEGIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSP....TAPGLSDCYGDEFEALYTRYE.KEGRGK.TIKAQKLWYSILEAQTETGTPFVVYKDACNRKSQKNLG..VIKSSNLCCEIVEYSAP..........TAVCNLASVALPAFIEFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKD.PYETFQGSPASQG.LQFDMWD....KPYGM...WDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGNPYLLRDLVDLGIWDKTQNGSIQGKDLYKTVWEIINMAADRSVYIDQSHSLNLFLRA.PTMGKLTSMHFYGWKKGLKTMYYLRTQAASENVADISN : ECAE0003132
ECAE0003132   : QFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPXYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLV : RIR1_MYCGE
RIR1_MYCGE    : EFVSCYLLRIEDNMESIGRAITTTLQLSKRDGGVALLLSNLREAGAPIKKIENQSSGIIPIMKLLEDSFSYSNQLGQRQGAGAVYLHCHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITFQLAKNNEMMALFSPYDIYQEYGKALSDISVTEMYYELLE.NQRIKKTFISARKFFQTIAELHFESGYPYILFDDTVN...RRNAHKNRIVMSNLCSEIVQPSLPSDLTFKKVGSDISCNLGSLNIARAME.SELAELIQLAIESLDLVSRISSLEAPSIKKGNSENHALGLGAMNLHGFLATNAIYYDSKEAVDFTNIFFYTVAYHAFSASNKLALELGKFKDFENTKFADG.SYFDKYTEKVQALFDKPTQENWKQLVASIQKDGLANSHLMAIAPTGSISYLSSCTPSLQPVVSPVEVRKEGK.LGRIYVPAYKLDND..NYQYFKDG.AYELGFEPIINIVAAAQQHVDQAISLTLFMTDKATTRDLNKAYIYAFKKGCSSIYYVRVRQDVLKDSEDHT : DRU57964
DRU57964      : .LSSCFLLAMKDDSEGIYDTLKQCALISKSAGGIGVAVSCIRATGRYIAGTNGNSNGLVPMLRVNNNTARYVDQGGKRPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMCP....NCPGLDECWGEEFEKLYAKYE.QEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSRQNLG..TIKCSNLCTEIVEYTSA..........VAVCNLASIALNMYVTFQKLASVTKVIVKNLNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEAQLLNTQIFETIYYAALESSCELAAEY.PYQTYAGCPVSKG.LQYDMWE....TPTDL...WDWAALKEKIANDGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGNPHLLKDLTERGLWNKAQNGSIQTKELYKTVWEILKMAADRGAYIDQSQSLNIHIAE.PNYGKLTSMHFYGWKQGLKTMYYLRTKPGAETQKTTSS : RIR3_SALTY
RIR3_SALTY    : ELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDELIA.DPHVRKTYINARDFFQTLAEIQFESGYPYIMFEDTVN...RANPIAGRINMSNLCSEILQVNSADNLDYTHIGHDISCNLGSLNIAHVMD.PDIGRTVETAIRGLTAVSDMSHIRVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGTFAGFAQSRYASG.DYFTQYLAKVRALFARPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGK.TGRVYYPAPFMTNE..NLDMYQD..AYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQLALEG..... : RIR1_HSVE4
RIR1_HSVE4    : .MASCYLLNPRVTDSAIPALMEEVGPILCNRGGIGLSLQRFNTPPT.....EGCSRGVMALLKLLDSMTMAINSDGERPTGVCVYFEPWHADIRAILNMRGMLARDEVRCDNIFACMWTPDLFFDRYQRDGMWTLFD.....DASHLCHMYGNDFTREYERLE.RCGFGIDAIPIQDMAFIIVRSAVMTGSPFLMFKDACNRHYFDMRQRGAIMGSNLCTEIIQHADE..........NGVCNLASINLPKCLAFAALGRAAATATIFVNAMMCASTYPTVKSQKGVEENRSLGLGIQGLHTTFLMLDLDMASPEAHQLNKQIAERLLLNSMKASATLCKLG.PFKGFEDSKYSRG.LPFDAYP...VTLTNR...NAWRRLRTDIKQYGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGNVLLMRTIRSIFPQELAAKWSVVGLSKFKTAFELINMCADRAAFVDQSQSMSLFITEKLPASRIMNLLVHAYKRGLKTMYYCKIKKATNNGVFVG. : RIR1_HSV11
RIR1_HSV11    : .TSSCYLVNPQATTATLRAITSNVSAILARNGGIGLCVQAFNDSGP.....G..TASVMPALKVLDSLVAAHNKESARPTGACVYLEPWHTDVRAVLRMKGVLAGEEQRCDNIFSALWMPDLFFKRLIRDGTWTLFDR....DSMSLADFHGEEFEKLYQHLE.VMGFG.EQIPIQELAYGIVRSAATTGSPFVMFKDAVNRHYYDTQG.AAIAGSNLCTEIVHPASK..........SGVCNLGSVNLARCVSFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAEFQDLNKHIAEVMLLSAMKTSNALCVRG.PFNHFKRSMYRAG.FHWERFP...ARPRYE...GEWEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGNTLLLKELERTFS..MAKQWSVAQLRRFKTAFDLIDLCADRAPYVDHSQSMTLYVTETLPASTLVRLLVHAYKRGLKTMYYCKVRKATNSGVFGGD : RIR1_PLAFG
RIR1_PLAFG    : .MSSCFLLSMKADSEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGKRKGSYAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCP....NCPGLSETWGEEFEKLYTKYE.EENMGKKTVLAQDLWFAILQSQIETGVPIYLYKDSCNAKPIKNLG..TIKCSNLCCEIIEYTSP..........VAVCNLASIALCKFVDFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYLYESDAAKELNKRIYETMYYAALEMSVDWLQ.S.PYESYQGSPGSQG.LQFDMWN....VDNKY...WDWDELKLKIAKTGLRNLLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGNPHLLKDLFDRGLWDKAHNGSIQYKELYKTVWEIIDMAADRGYFIDQSQSLNIYIQK.PTFAKLSSMHFYGWEKGLKTAYYLRTQAATKLKNADGV : RIR1_ASFM2
RIR1_ASFM2    : .LSSCFLLNVNDNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGGLRPGAYAVYLELWHQDIFTFLQMPKGQMAEQLNAPNLKYGLWVPDLFMEILEDHNTWYLFSP....DAPNLHKVFDLEFKKLYYQYV.AEKRYTGVTTAKEIIKEWFKTVVQVGNPYIGFKDAINRKSLSHVG..TITNSNLCIEITIPCWE.......EAEQGVCNLAAVNLAAFIRYRGLIEAAGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASLKMKFGSPEAIAIDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKG.LQPDLWVPSWENRVAQLTPKKWWQLRLAAIQ.GVRNGYLTALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGNKYLMDDLEEINLWSQNAGGSIQHRERYKTSRELTKHAAARNPFVSQSMSLNYYFYE..ELSQVLTVLVLGWKKGLTTSYYCHFSPGAQKKIIRNS : VACI3A
VACI3A        : .MSSCFLLNMIDDSEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCP....DCPGLDNVWGDEFERLYTLYE.RERRYKSIIKARVVWKAIIESQIETGTPFILYKDACNKKSQQNLG..TIKCSNLCTEIIQYADA..........VAVCNLGSVALNMFVIFLKLKVVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDINKKIFETIYYGALEASCELAEKE.PYDTYVGSYASNG.LQYDLWN....VPSDL...WNWEPLKDKIRTYGLRNSLLVAPLPLHQHAQILGNNESVEPYTSNIYTRRVLSGNPHLLRVLTERKLWNKADGGSIQNKRVYKTIWEIIKMAADRGAFIDQSQSMNIHIAD.PSYSKLTSMHFYGWSLGLKTMYYLRTKPASPPVVCDS. : RIR1_SCHPO
RIR1_SCHPO    : .LSSCFLVTMKDDSEGIYDTLKMCAMISKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGKRPGAFAAYLEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFCP....NAPGLADVWGDEFVALYEKYE.KENRGRRSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKSQKNVG..TIRCSNLCTEIVEYSSP..........VAVCNLASVALPTFIKFQKLHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQIFETIYHAALEASCEIAQVE.TYESYEGSPASQG.LQYDMWN....NPTDL...WDWAELKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGNPWLLKDLVERDLWNKMLDGSIQAKDLYKTVWEVIDYAADRGPFIDQSQSLNIHLKD.PSYGKITSMHFYGWKKGLKTMYYLRTMAASNEESNEEN : RIR1_BPT4
RIR1_BPT4     : QFSSCVVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYITLFSPHEMGGLYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTN...DVNSPDAEIGLCTLSAFVLDNFDWQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK.RRNLGVGVTNYAAWLASNFASYED..ANDLTHELFERLQYGLIKASIKLAKEKGPSEYYSDTRWSRGELPIDWYNKKIDQIAAPKYVCDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNGYEPPRGPVSVKESKEGSFNQVVPNIEHNIDLYDYTWKLAKNKPYLTQVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLYGWYYGIKNFYYHNTRDGSGTDDYEIE : ECONRDA
ECONRDA       : QFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIASTPGVFVRWVARFAVVKRSIPAAFR.STTFPDSGESCSRRCAGRRCGNVFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCITHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKIWIPSLMSRCITTGKLCVSQSKRTVCVTPTLSALMPSETSSQISNATNGIERRAVTSASKRRKTVFCARWCRTTSTCTTPMSCCGKCRVMVICNWWVSCRNLSISRSLPTPTTIRHASRQE.KCPMQQLLKDLLTAYKFGVKTLYYQTPVTAVKDAQDDLG : TAU73619
TAU73619      : .LSACFVLPVGDSIEDIFETLKNTALIHKSGGGTGFSFSRLRPKDDIVGSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIMEFILSK...DSENKVLSNFNISVGVTDDFFDKLDNDDYVDLVNP..........................RTKKIMKRIKAREIWDAIIDQAWKTADPGLIFLDEINRKNVKNVG..DIESTNPCGEQPLLPYE.............CNLGSINLSKYVVFDRLRETVWTATRFLDDVIDANKFPVEQIKKVTRMTRKIGLGVMGFADMLIKLEIPYNSWEALEIGEKVMSFINDESHKASQALAEER.VFPAWYGSEWEKEGMRNSTTTIFALAFVRHELLEVNPLFEEKTRELGIYSEELMRQVAETGNLENVKINEEVKKIFVATFQRYCDSGNMRTREDIARAYRMAIDKSKTVQVEVIELVTKMKIDSTFDPACRRESAINEKILIIYIFKIIFAVGSCFRNAPMGISPVLICRLYAPVLKVTFDLV : S75875
S75875        : .LTSCFIVAMEDNLESIFGEITNAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPWTKLLNDTAIAVNQGGRRAGAVTVGLDVWHLDVPEFLEMQAENGDQRRKAYDIFPQLILPDEFMRRVINKEDWTLVDPYEVEKGIELAELWGEQFEGAYREIESTTITLYKRINARELFKQIMRTQVETGMPYLSFKDTINKANNKHLG..YIPGTNLCCESFSNVTP.........DAHCCNLVSLNLANLDL..DIAGVSQIAVRMLDNTIELTAPPFADAKSHNNKYRTIGVGAMGLADWLAKRRLNYDEL...ADINRLFEEIGYWCTQSSMELAKERGAYPAFPGSDWQKG.LLIGSKPWFQANAAKP...ERWEKLSNDIQTHGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFYDKWAKGAPPFIGNCFWFYP....ENKTMDQRKVVKAVAADTGISMELLFNLNAGIYFPEEPERSLNAKDIFDTLVMAWEAGCKAIYYIRTVQKD..DFKDS. : RIR1_BACSU
RIR1_BACSU    : ELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMDMNEMYDKFVD.NPRVKKEKINPRKLLEKLAMLRSESGYPYIMFQDNVNKV.HANNHISKVKFSNLCSEVLQASQVDYDEEDEIGLDISCNLGSLNILNVME.KSIEKTVKLATDSLTHVSETTDIRAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMMVNFYSIQRSAEIAKEKGTFDQYEGSTYATG.EYFDKYVEKIANLFEGPTTEDWKKLKAFVAEHGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYG..NSKTYYPMPGLASN..NWFFYKE..AYDMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTKDTGQDS..... : RIR1_MYCTU
RIR1_MYCTU    : EPVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGGAIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSPYDVERVYGVPFADISVTEKYYEMVD.DARIRKTKIKAREFFQTLAELQFESGYPYIMFEDTVN...RANPIDGKITHSNLCSEILQVSTPEDLSYAKVGKDISCNLGSLNIAKTMD.PDFAQTIEVAIRALTAVRHQTHIKVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGHFKGFERSKYASG.EFFDKYTQKVRQLFADPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVEVRKEGK.IGRVYYPAPYMTND..NLEYYED..AYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQMALEG..... : SENPVRR1G1
SENPVRR1G1    : .MCSCFLQSIKDDSDGIYKTLHESALISNLGGGLGLSAQNSGGS............GLVNMLRVFNNMVRHVDQGGKRKGALAAYIEPWHPEIYEFLNLRRNMGSEDTKARDLMLGLWIPDLFMKRVKNNQMWSLFSH....KCPDLADKYGFDFEMRYCDYE.NAQVYERQVKARDLFRFIVETNVETGGPYMLYKDHCNNFSQKNLG..TIKCSNLCAEIVQYCDE..........TAVCNLASIAVNKCVDYVLLKHLTKIIVRNLNKIIDVNHYPTAESERSNKKHRPIGVGIQGLADAFVLLDIAYDSDDARFVNYSIAETIYFAALEASCELAKIN.PYESYTDSPVSRG.LHFHNYDNGVYHSNNL...WDWNELQCNINKYGVRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRVLAGNQYLVKALIDLDIYTRAENGSVQNKNLFKTAWEIINMAADRAPFIDQSQSLNLFVAE.PTYSVVSSIHFYAWEKKLKTMYYLRTKPAAKKRKMNDD : RIR1_CAEEL
RIR1_CAEEL    : .MSSCFLLTMSEDSLGIYDTLKQCALISKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGKRPGAFAIYLEPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMCP....CCPGLDDCWGEEFEALYAKYE.AEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAANRKSQQNLG..TIKCSNLCTEIIEYSAP..........IAVCNLASIALNRYVTFVKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSAEARDLNKRIFETIYYAALEASCELAELN.PYSTYEGSPVSKG.LQFDMWG....TPTDQ...CDWATLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGNPHMLKDLVERGLWTKANNGSIQNKELYRTVWEIIEMAADRGAYIDQSQSLNIHMAK.PSYAGITSMHFYGWKKGLKTMYYLRTKPAVTNQQAETP : HSKRR12A
HSKRR12A      : .TASCYLMDPRTTTDTIKVITNDVVPHLLARGGIGISLQHVNQK...........SGLMHVLKLIDSLIVATNVNESRPTGVCVYLEPWHSDIMSALTMRGMMAAEERRCDNVFLALWACDLLFKRYLRNGMWTLFD.....SASILSKLYGDKFEVEYERLE.KEGIGVAQIPIRDMMFAIIKSAASTGSPFILFKDACNRHYTDTQG.DAIAGSNLCTEIIQKTNE..........NGVCTLASINLARCVRLMPLGMPFRLATVFTNAIMDGSDVPTVKSQSGRDRNRSIGIGVQGFHTAMLSLGLDLEDGAVRALNKQIFELMLLEAMTVSCEFCERG.PFPDFSDSYYAQG.LHFDGWD...VELTAP...EEWGVLRGRIMSSGLYNAQFIALMPTAASAQVTEVSEGFAPLFSNMFSKVTSAGNSQLMRDVRQIYPDNISTAWCVKELLKYKTAFELIDLCADRAPFVDQSQSMTLFVTETLLASRVMNLLLHAYKAGLKTMYYCKIRKATNTGIFSGD : RIR1_VZVD
RIR1_VZVD     : .TASCYLMDPESITRAVRAITGDVGTVLQSRGGVGISLQSLNLIPT.....ENQTKGLLAVLKLLDCMVMAINSDCERPTGVCVYIEPWHVDLQTVLATRGMLVRDEFRCDNIFCCLWTPDLFFERYLSKGQWTLFD.....NADILRTLHGEAFTSTYLRLE.REGLGVSSVPIQDIAFTIIRSAAVTGSPFLMFKDACNRNYMNTQG.NAITGSNLCTEIVQKADA..........HGVCNLASINLTTCLSLNDLQLTARTTVIFLNGVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFDLTSQPARRLNVQIAELMLYETMKTSMEMCKIGGPFKGFTESKYAKG.LHQDGFS...ISYLD....LPWCTLRDDICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTTSGNLDLMDELRDMYSCEIKNQWSVIRLLKYKTAFELVDMCAERAPFIDQSQSMTLFIEETIPASKIMNLLIRAYKAGLKTMYYCKIRKATNSGLFAG. : RIR1_PRVKA
RIR1_PRVKA    : .LASCYLLNPLPRTEAVRAITDEVAPILLRRGGVGLSLQSFNRTPS.....GDCTRGIMAVLKALDSMTAAINSDSERPTGVCVYVEPWHADVRAVLNMRGMLAADELRCDNIFSCLWTPDLFFQRYQRDGKWTLFD.....DASHLASLHGPDFAREYERLE.RLGLGVESLPIQDMAFLIVRSAVMTGSPFLMMKDACNRHFTDTRG.AALATSNLCTEIVQRATP..........NGVCNLASVNLPACLAFAALRRAARVAAVFVNAMMRIGNYPTGASVEGVRRSRSLGIGLQGLHTTVLALDMDMADPAARRLNAAIAEELLYGVMDASVELCERG.PFDGFEHSRYARG.MPFDAYE...VSLREP...MRWDALRVRIAEHGVYNAQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGNLPLMETLRRLFPREVRAQWSVAALAKFKTAFELIDMCADRAPFVDHSQSMSLFLTEKLHASRVMGLLMRAYNLGLKTMYYCKIRKATNNGVFTG. : RIR1_HSVBC
RIR1_HSVBC    : .LASCYLLNPQVSSEAVEAITTEVARILLNRGGIGISFQSFDRAVS.....RDCKRGIMGALKLLDSMAMAINSDSERPTGICVYLEPWHCDVRAVLNMRGLLARDETRCDNLFSCLWVPDLLFDRYLAEGVWTLFD.....DASHLSRLHGPAFTAEYERLE.REGLGVETVPVQDLAFLIVRSIVMTGSPFVMFKDACNRHYMDTAG.DALTGSNLCTEIVQRASP..........HGVCNLASVNLPRCVRFAALSTAAATAAIFVNAMMLGGQYPTEKAARGVARHRSLGIGFQGLHTLLLELGMDMLSPAARRLNVEIAERLLLAVMATSATLCEYG.PFEDFARSKFARG.MPFDGYE...VVLSLP...RAWARLREKVARHGLYNAQFVALMPTVSSSQVTEGSEGFSPVFTNMFSKVTMSGNLPLMRALRKHFTREVREQWSVAALAKFKTAFELIDLCADRAPFVDQSQSMSLFVTEKVPASQIMNLLVYAYKKGLKTLYYCKIRKATNNGVFTG. : RIR1_HSVSA
RIR1_HSVSA    : .LSSCFIIAPTLDTSTISSIFGELAPLLASRSGVGVDVTKFSFGG..........KNIHSCLKLINAQVEFFNDKSVRPVSVATYIEVWHCQIHEFLSAKLPENPD..RCNSIFQGVCVPSLFFKMYESNGLWYLFDP....QAPNLTRLYGLEFEEEYLRLV.SEKKYKQSVTLKSLMFSLINTIIKTGSPYVISKEAMNKHHYETQG.EAINCSNLCAEIVQQPKQ..........TSTCNLANVCLPKCLNFSKLEYAVQAAVFIINACILS.PSPTSSATVG.QRERSMGIGCHGLADVFSEMGYGYLDLESECLDRDIFETMYYTAVKTSSEICSVGKPFAGFRKSKLAHGVATWDAM....PQRVPM...KQWIHLQDNIKKFGVFNSQFIALMPTAGTSQLTGYTDSFYPYFANMSSKVSNKEN...ITFLKNVKP..LFYGGDVSMYKHFLTAFDQMRRASIRAPYVDQSQSLTLFLTEVQSAKYLKDLLLLGFRLGLKTMYYCRVKKTTDAQIVLAD : S55656
S55656        : .LASCFIMNPDMSTKTLSAVFRDLSPLLCSKSGVGMNLTNFSSGG..........KNVQSCLRLINSQVEFCNDKNLRPVSVAAYMELWHEQIEEFLAAKLPENPE..RCQSIFQGVCVPGLFFRLYEQDSQWHLFSP....KGGHLAGLYGDKFDEEYARLV.RHGLYSSSLPAKSLMFALISAIIKTGSPYILSKDAINRHHFETQG.NAISYANLCAEVVQQPHE..........TSTCNLANVCLPACLRFDTLRAAVRAAVYMINASILGGVCPTPGVRVM.QAERSAGIGVQGLADVFAKLGRGYMDAESALLDARIFEVMYYQAVRASNQLVTVGGPHANWKNSKLSRGEESWGVQY...SLFIER...QLWEELRESVTKHGTFNSQFIALMPTAGTSQLTGLSESFYPFYANVSSKVSNKEN...ITFLERVSP..VYHGGDVSKYRNFLTAFDQIRRAAARSPFVDQSQSFSFFLKEVKSASYVKNLILLGHGLGLKTMYYCRIQKQTGDGVGGYK : KSU7569865
KSU7569865    : .LASCFILQPSMMNGTLDALYHDMSPLLASKSGVGLDVTSFS.HQ..........KNIASCLKLVDAQVHYFNDNNIRPVGASAYMELWHSQICDFLNAKLPENPD..RCHSLFQGVCIPTLFFRMYEKSKLWYLFDP....AAPNLIKLYGAAFDNEYERLV.RAGKYVSCMPLKSMMFTLIHTIIKTGSPYVLLKEALNEHHTDTQG.MAINCSNLCAEIVQLPGR..........TSVCNLANICLPKCLRFEALGDAVRVAVLVINACILGGSHPTPGVERG.QKERSMGIGVQGLADVFAELGYGYLDAESAELDKNIFQSMYYTAVETSHNLVLEGQPFHGWEVSNFAKGRQTWEGE....ASFVPR...HRWDALGKSIAEHGIFNSQFLAVMPTAGTSQVTGYAESVYPFFANISSKVTNKEN...VTFFKKVLP..LQYGGDVSTYRVFLTAFDLLDRARARAPFVDQSQSMSFFLKEVRNASYLRDLLLHGYRLGLKTMYYCRVQKQSHSGMKQDG : RBS_PROHO

              : 221-------231-------241-------251-------261-------271-------281-------291-------301-------311-------321-------331-------341-------351-------361-------371-------381-------391-------401-------411-------421-------431-------441-------451-------461-------471-------481-------491-------501-------511-------521-------531-------541-------551-------561-------571-------581-------591-------601-------611-------621-------631-------641-------651-------661-------671-------681-------691-------701-------711-------721-------731-------743--- :
OrigSeq       : QFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELDELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDDIDDLSNFQL :OrigSeq
cons          : ----EEEEE-----HHHHHHHHHHHHHHHH-----EEEEE-------------------HHHHHHHHHHHHHHH-------EEEEEE---HHHHHHHHHH--------------------HHHHHHHHH---EEEE---------------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----EEEE------------------------EEEE-----------------EHHHE---HHH-HHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH------------------E--HH-----------HHHHHHHHHHHHHH------EEEE------------------------EE--------HH---HHHH------------HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHH----EEEEEE------------- :cons
dsc           : ----EEEE------HHHHHHHHHHHHHHHH----EEEHHHHHH---EEE----------HHHHHHHHHHHHHHHH------HHEEHHHHHHHHHHHHHHH----HHHHHHHHHH--HHHHHHHHHHHHH---EEE---------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-------EEE-------------------------HH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-----HH----HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHH-----------HHHHHHHHHHHHHHHHHHHEEEEE----------------------EEEE--------HH---HHHHHHHHHHHHH------HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHH-----HHEE-------------- :dsc
mul           : ----EEEEH-------HHHHHH-H-HEE---------E----------------------EHHHHHH-HH-----------EEEEEH----HHHHHHHHH------HHHHH---EEHH--HHHHHHH------EEE----------HHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH------EEEHHH----------------------EEEE---------------EEEE----H---HHHHHHHHHHHHHHHHHHHHHH---------H-------------EE--HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHH--------EEE----------------------------------HHHHHHHHH------------H--HHHHHHHHHHHHHH----------EEEHH-----HHHHHHHHHH-----EEEEEEEE------------ :mul
nnssp         : ----EEEEE-----HHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHH----------EEEE------HHHHHHH---------------------HHHHHHHHH---EEEE---------------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH----EEEE----------------------------------------------------------HHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHH----HHHHHHHHHHHHH-------EE-----------------------------------HHHHHHHHHH------------HHHHHHHHHHHHHHHH------------EE------HHHHHHHHHHHHH----EEEEEE------------- :nnssp
phd           : ----EEEEE----HHHHHHHHHHHHHHHHH-----EEEEE---------------HHHHHHHHHHHHHHHHHHH-------EEEEEE---HHHHHHHHHHH-------------------HHHHHHHHH---EEEE----------------HHHHHHHHHHHHHH--------HHHHHHHHHHHHHH---EEEEEE-----------------------EEEE-----------------EHHHE---HHH-HHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------E-----------------HHHHHHHHHHHH--------EE------------------------EEE-------------------------E-HHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHH--EEEEEEEE------------ :phd
pred          : ---EEEEEEE----HHHHHHHHHHHHHH------EEEE----------------------EEEHHHHHEEEE---------EEEEEE----HHHHHHHHH------HHHHHH-EEEEE-HHHHHHHHH----EEEE------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----EEEE----------------------EEEEEE---------------EEEEE----------HHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHH-------EEE------------------------EEE------EEEE--------HHHHHHH------HHHHHHHHHHHHH--------------------HHHHHHHHHHHHHH----EEEEE-------------- :pred
zpred         : --EEEEEEE-----HHHHHHHHHHEEEEE---EEEEEEEE-----------------EEEEEEHHHHHEEEE--------EEEEEEHHHHHHHHHHHHHH----HHHHHHH-EEEEEEEHHHHHHHHH-----EEE----------------HHHHHHHHHHHHHHHHH--EEHHHHHHHHHHHHE------EEEEEHH------------------EEEEEEE----------------EEEEEHEEEEHHHHHHHHHHHHHHHHHHHEEEE-------EHHHH-----EEEEEEEEEEEHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHH-E-----EEEEEE----EEEEE-----EE-----EEEEE-------EEEEEE------------------HHHHHHHHHHHHHH-----------EEE----HHHHHEEEEHHHHH--EEEEEEEEEE----------- :zpred


access        : EBBBBBBBEBEEEBEBBEEBBEEBBBBBEEEEBBBBBBBBBEBEBEBBEBBEEBBEBBBBBBEBBEBBBEBBEEEEEEEBBBBBBB-BB-BEBBBBBEBEEEEEEEEBEBEBBBBBBBBBEBBBE-BEEEEEBBBBBE-EBEEBBBBBEB-BEEBEEBBEEBEEEEEEEEEBBEBEEBBBBBBEBBBEEB-BBBBBEEBBEEEBBEEEBEBBBEBBEBBBEBBE-BEEEEE-EEEEBEBBBBBBBBBBBBBBBBBBEBEEBBEBBBEBBBBBBBBBE-EBEEBEEEEEEB-BBBBBBBBBBBBBBEBBBEBEEEEBEEBBEEBBEBBBBBBBEBBBEBBEEEEE-EBBEEBEBBEBBBBBEBBEEEBBBBBEEEB-E-BEEBEEEBBEBBB-BBBBBBBBEEBBBBEBBEBEEBBEEBBBEBBBEBBBEE-BEBBEEBBEBBBEBBEBEBEBEB-EBBEBBBEBBEBBBE-BBBBEEB-BBBBBBEEEBEBEEBBBBBBBBBEEBBEBBBBBEBEEEBEEEBEEEE : access

PHD Rel       : 9741357713677146888877766531216874146652146676355776633113553345465666652158777633578514222598987653137864443231122321223677775222535775267567656654343145899999997532244433324699999999987438613677243554565457865212432211215413666887767665322111101111211135577999999999987642257896412444565664556513678999997622562146777799999999999999999998559755455564335543112443221212577973336999999976156431201116676654122465677653332313213678852122111224324444432110122335799999987321134445443311035554236789999766515515787861244544565799 : PHD Rel
Pred Rel      : 0077880805777658778888877675679986676555578887677788898898566777577655550999899966687766877688777886679777668787665567676887008667776987799999805866866678899999998776668875888898999999886669977995677778999998776666676655667679999887778886576565887777766868888888977788868765678989666577677777666655888998888666689776688888877988888888899098889877888898866676677778768887577777666889998886666676560707999876667799870888666555556666766607766667778875568777975576788885886677765556689788998866788888998888869755560755777777766000 : Predator Rel


dssp          : -----EEEE----HHHHHHHHHHHHH-------EEEE---------------------HHHHHHHHHHH------------EEEEEE--E--HHHH---------HHH-----EEEEEE-HHHHHHHH---EEEEE-------HHHHHHH-HHHHHHHHHHHHH-----EEEEEHHHHHHHHHHHHHHH--EEEEEHHHHHH---E--------------------E----------E-EE-EEEEEE------HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH--EEEEEE-HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHEHHHH---HHHH--HHHHH---------HHHHHHHHHHH-------E-E----HHHHH-------------EEEEEE--EEEEEE---HHHH------HHH----HHHHHHHHHHH------E---EEE-HHH-HHH---HHHHHHHHHHHHH----EE--EEE---HHHH----- :dssp
define        : EEEEEEEEEEEEHHHHHHHHHHHHHHH------EEEEE----------------EEEEHHHHHHHHHHHHH----------EEEE------HHHHHHHH--EEEE------EEEEEEEEHHHHHHHHHHHEEEEEEE------HHHHHHHHHHHHHHHHHHHHHH-----EEEEHHHHHHHHHHHHHHH-EEEEEEHHHHHHHH-----EEEE-------EEEE-EEEEE-----EEEEEE----------------HHHHHHHHHHHHHHHHH-EEEEHHHHHHHHHHHH-EEEEEEHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH----EEEEHHHHHEEEE-----HHHHHHHHHHEEEE---EEEEEE-HHHHHHHH-------------------EEEEEEE--------EEEE------HHHHHHHHHHHHHH-----EEEEE--------EEEEHHHHHHHHHHHHHHH---EEEEEEE-------EEEE :define
stride        : ----EEEEE----HHHHHHHHHHHHHHH-----EEEE---------------------HHHHHHHHHHHH-----------EEEEEE--E-HHHHHH--------HHH-----EEEEEE-HHHHHHHHH--EEEEE------HHHHHHHH-HHHHHHHHHHHHH-----EEEEEHHHHHHHHHHHHHHH--EEEEEHHHHHH---E--------------------E----------E-EEEEEEEEE------HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH--EEEEEE-HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHEHHHH---HHH---HHHHH---------HHHHHHHHHHH-------E-E---HHHHHHH------------EEEE------EEEE---HHH-------HHH---HHHHHHHHHHHHH-----E---EEE-HHH-HHH---HHHHHHHHHHHHHH---EE--EEE---HHHHH---- :stride


Q3 values for 1rlr-2-JAC  View SS in Rasmol

	dssp	define	stride
phd	67.68	63.12	70.15
dsc	64.07	55.13	65.21
pred	70.15	65.02	71.67
mul	68.44	60.27	69.77
nnssp	71.67	64.26	72.62
zpred	63.88	57.60	64.83
cons	68.82	62.74	70.91