Results for 1smnb-1-AUTO.1


1smnb-1-AUTO.1    : SIDNCAVGCPTGGSSNVSIVRHAYTLNNNSTTKFANWVAYHITKDTPASGKTRNWKTDPALNPADTLAPADYTGANAALKVDRGHQAPLASLAGVSDWESLNYLSNITPQKSDLNQGAWARLEDQERKLIDRADISSVYTVTGPLYERDMGKLPGTQKAHTIPSAYWKVIFINNSPAVNHYAAFLFDQNTPKGADFCQFRVTVDEIEKRTGLIIWAGLPDDVQASLKSKPGVLPELMGCKN : MMENOGD
MMENOGD           : KAPGLLGRVPLLPVVDLPALPGGPAGGSDPRTRGALWVLEQLR...PERLRGDGD.RSACDFREDDSVHAYHRATNADYRFDRGHLAAAANHRWQRAMDDTFYLSNVAPQVPHLNQNAWNNLERYSRSLTR..TYQNVYVCTGPLFLPRTEQVIGKN.HVAVPTHFFKVLILEA..AGGQIELRSYVMNAPVDIPLERFLVPIESIERASGLLFVPNILGNLKAITASK............ : A09302
A09302            : SIDNCAVGCPTGGSSNVSIVRHAYTLNNNSTTKFANWVAYHITKDTPASGKTRNWKTDPALNPADTLAPADYTGANAALKVDRGHQAPLASLAGVSDWESLNYLSNITPQKSDLNQGAWARLEDQERKLIDRADISSVYTVTGPLYERDMGKLPGTQKAHTIPSAYWKVIFINNSPAVNHYAAFLFDQNTPKGADFCQFRVTVDEIEKRTGLIIWAGLPDDVQASLKSKP....ASCRS.. : NUCA_ANASP
NUCA_ANASP        : TELSPSISVHLLLGNPSGATPTKLTPDNNNSKGTANWVAWQLN....SSWLGNAERQDN..FRPDKTLPAGWVRVTPSMYYDRGHIAPSADRTKTEDNAATFLMTNMMPQTPDNNRNTWGNLEDYCRELVS..QGKELYIVAGPNGSLGKP.LKG...KVTVPKSTWKIVVVLDSGLEGITANTRVIANIPNDNDWRAYKVSVDELESLTGYDFLSNVSPNIQTSIEKVDN.......... : NUC1_YEAST
NUC1_YEAST        : HSPTQIIETPYPPTQNSNIQSHSFNVDNNRQTQNPYWVLEHIT...PESLAARNADRKNSFFKEDEVIPEKFRGKLRDYFYDRGHQAPAADAKFQQAMDDTFYLSNMCPQVGEFNRDYWAHLEYFCRGLTK..KYKSVRIVTGPLYLPKKDEVIGNPPSIAVPTHFFKLIVAEANPAREDIAVAAFVLNEPISTKLTDFEVPIDALERSTGLELLQKVPDFSNAAIKSKDVKLLPPPKKRN : AB00148847

                  : 5---------15--------25--------35--------45--------55--------65--------75--------85--------95--------105-------115-------125-------135-------145-------155-------165-------175-------185-------195-------205-------215-------225-------235-------2 :
OrigSeq           : SIDNCAVGCPTGGSSNVSIVRHAYTLNNNSTTKFANWVAYHITKDTPASGKTRNWKTDPALNPADTLAPADYTGANAALKVDRGHQAPLASLAGVSDWESLNYLSNITPQKSDLNQGAWARLEDQERKLIDRADISSVYTVTGPLYERDMGKLPGTQKAHTIPSAYWKVIFINNSPAVNHYAAFLFDQNTPKGADFCQFRVTVDEIEKRTGLIIWAGLPDDVQASLKSKPGVLPELMGCKN :OrigSeq
cons              : ------------------------------------EEEEEH-------------------------------------E--------HHH------HHHHEE-------------HHHHHHHHHHHHHHHH----EEEEE-------------------E-----EEEEEEE--------EEEEEE-----------EEEEHHHHHH---EEEEE-----HHHHH--------------- :cons
dsc               : -----EEE-------------EEEE-----------EEEEE---------------------------------HHHHHHHHHHH--HHHHHHHHHHHHHHEE-----------HHHHHHHHHHHHHHHHH-----EEEEE------------------------EEEEEEE------HHHHHEEHH----------EEEEEHHHHHHHHHHEEEE------------------------- :dsc
mul               : ------EE----------------------------EEEHE-----------------------------------------------HHH------HH-HH----------------HHHHHH-HHHHHH-----EEEEEE-----------------EEE-----EEEEE-------HHHHHHHH----------EEEEE-HHHH----EEEEE------HHHH--------------- :mul
nnssp             : ------------------------------------EEEEEE-----------------------------------------------------------EE--------------HHHHHHHHHHHHHHH-----EEEE-------------------------EEEEEE------------EEE-----------EEE-HHHHHH----EEE-------------------------- :nnssp
phd               : ----------------------------------HHHHHHHHH------------------------------------E--------HHH------HHHHHHH------------HHHHHHHHHHHHHHHH----EEEEE-------------------EE-----EEEEEE--------EEEEEEE----------EEEEHHHHHH---EEEEE-----HHHHH--------------- :phd
pred              : ----EEEE--------EEEE--EEEE------------------------------------------------------------HHHHHHHH-----------------------HHHHHHHHHHHHHHH---EEEEEE----------------EEEE-----EEEEEEE---------EEEE----------EEEHHHHHHHHHH--EEEE------HHHHHH-------------- :pred
zpred             : -----EEEEE------EEEEEEEE-----------EEHHHE-----------------------HHHHHHHHH-----EEEEEHHHHHHHHHHHHHHHHHH-----EEEEE--------HHHHHHHHHHH------EEEEEEEE---------------EEEE-HHHEEEEE-------HHHEHEEE-------EEEEEEEHHHHHHHHHHHEEEE-----HHHHH--------------- :zpred


access            : EEEEBBBBBB-EEEEEBBBBEBBBEBEEEEEEEBBBBBBBBBEEE-EEEBEEEEEEEEEB-BEEEEBBEBEBEBBBBBBEBEEE-BBBBBE-EBBEEBEBBBBBBEBBEE-EEBEEEBBBEBEE-BEEBBEEBEBEBBBBBBBEB--EEEEEBEEEEEEBBBBEBBBEBBBBEB-EBEBBBBBBBBBBEBEEEBEBBEBEBBBEEBEEBEBBBBBBEB-EEBEBBBEEEEEEBBEEBEEEE : access

PHD Rel           : 9998423356877588886434678999886641477766751279823468877887667887788787543332131125444451211122331232222212567888776136899999999998511545289961777677876667998863112212179998628965531347764267789864322220255511483266616876125542268986798788899 : PHD Rel
Pred Rel          : 0088807000999977080775766688999997870777676899998999879999988999877989877777887576676855666685577776655555999999900770888999969889886067809967997799987768878856778666509906699998767768769799999886666687888888066689900900008578689099088066000 : Predator Rel


dssp              : ----------E-------EE----EEEE------EEEEEEEE-------------E------HHH---HHHH--HHHHH-EEEEE---HHHH-----HHHHHEHHHEEEEEHHHHH-HHHHHHHHHHHH--------EEEEEEEE-------------------EEEEEEEE------E-EEEEEEE--------HHHHE--HHHHHHHH--E------HHHHHHH------HHHHH---- :dssp
define            : EEEE----EEEE---EEEEEE--EEEEEE---EEEEEEEEEEE--EEEEEEEEE-------------HHHHHHHHHHHHEEEEEEE-HHHHHH-----------------HHHHHHHHHHHHHHHHHHH-------EEEEEEEEEEE----------EEEE-----EEEEEEE---------EEEE---------------HHHHHHHHHEEEEE---HHHHHHHHHHEEEEHHHHHEEEE :define
stride            : ----------E------EEE----EEEE------EEEEEEEE-------------E------------HHHH--HHHHH-EEEEE------------HHHHHEHHHEEEEEHHHHH-HHHHHHHHHHHHH-------EEEEEEEE-------------------EEEEEEEE------E-EEEEEEE--------HHH-E--HHHHHHHH--E------HHHHHHHH-----HHHH----- :stride


Q3 values for 1smnb-1-AUTO.1  View SS in Rasmol

	dssp	define	stride
phd	64.32	51.45	64.73
dsc	64.32	51.04	63.90
pred	58.92	58.51	60.17
mul	61.83	48.96	62.24
nnssp	65.15	51.45	68.05
zpred	62.66	53.11	62.24
cons	67.63	55.19	68.05