Results for 1tnfa


1tnfa        : RTPSDKPVAHVVANPQAEGQLQWLNRRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSYQTKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLLFAESGQVYFGIIAL : TNFB_RAT
TNFB_RAT     : HQPPLKPAAHLVGYPSKQNSLLWRANTDRAFLRHGFSLNNNSLLIPTSGLYFVYSQVVFSGESCSPRPIYLAHEVQLFSSQYPFHVPLLSAQK....SVYP..GLQGPWVRSMYQGAVFLLSKGDQLSTHTDGISHLHFS.PSTVFFGAFAL : FASL_HUMAN
FASL_HUMAN   : HPSPLRKVAHLTGKNSRSMPLEWEDTYG.IVLLSGVKYKKGGLVINETGLYFVYSKVYFRGQSCNN..LPLSHKVYMRNSKYPQDLVMMEGKMMS.YCTTG.....QMWARSSYLGAVFNLTSADHLYVNVSELSLVNFE.ESQTFFGLYKL : TNFA_CAVPO
TNFA_CAVPO   : RSASDKPVAHVVANQQAEEELQWLSKRANALLANGMGLSDNQLVVPSDGLYLIYSQVLFKGQGCPS.YLLLTHTVSRLAVSYPEKVNLLSAIKSPCQKETPEGAERKPWYEPIYLGGVFQLQKGDRLSAEVNLPQYLDFADSGQIYFGVIAL : D86587
D86587       : RSSSNKPVAHVVANISAPGQLRWGDSYANALKANGVELKDNQLVVPTDGLYLIYSQVLFRGHGCPSTPLFLTHTISRIAVSYQTKVNILSAIKSPCHRETPEGAEAKPWYEPIYQGGVFQLEKGDRLSAEINQPEYLDYAESGQVYFGIIAL : S83283
S83283       : RSLQAKPVAHLIADQLAEGQLLWVGDVANTLLMNGMELVDNQLVLPSTGLYLVYSQLLYKGSQCGKESLVLTHKISRFTLSYQKKVTLLANIRSSCRKAAEDDGEPSAWYEPVYLAGVFQLTEGDKLVVDTNYPENLDFAEPGQLYFGAIA. : TNFB_HUMAN
TNFB_HUMAN   : RQHPLKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLSNNSLLVPTSGIYFVYSQVVFSGKAYSPKPLYLAHEVQLFSSQYPFHVPLLSSQK....MVYP..GLQEPWLHSMYHGAAFQLTQGDQLSTHTDGIPHLVLS.PSTVFFGAFAL : TNFC_HUMAN
TNFC_HUMAN   : LSPG.LPAAHLIGAPLKGQGLGWETTKEQAFLTSGTQFSDAELALPQDGLYYLYCLVGYRGRAPPGGSVTLRSSLYRAGGAYGTPELLLEGAETVTPVLDPARGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFA.RGKTFFGAVMV : TNFC_MOUSE
TNFC_MOUSE   : LNPE.LPAAHLIGAWMSGQGLSWEASQEEAFLRSGAQFSPTHLALPQDGVYYLYCHVGYRGRTPPAGSLTLRSALYRAGGAYGSPELLLEGAETVTPVVDPI.GYGSLWYTSVGFGGLAQLRSGERVYVNISHPDMVDYR.RGKTFFGAVMV : CD4L_MOUSE
CD4L_MOUSE   : MQRGPQIAAHVVSESNAASVLQWAKKGYYTMKSNLVMLENGKLTVKREGLYYVYTQVTFCSNREPSSQRPFIVGLWLKPSIGS.ERILLKAANT..HSSSQ.....LCEQQSVHLGGVFELQAGASVFVNVTEASQVIHR.VGFSSFGLLK. : TRAI_MOUSE
TRAI_MOUSE   : HITGLIPISKDGK.TLGQKIESWESSRKGHSFLNHVLFRNGELVIEQEGLYYIYSQTYFRFQEAEDARTKQLVQYIYKYTSYPDPIVLMKSARNSCWSRDA.....EYGLYSIYQGGLFELKKNDRIFVSVTNEHLMDLD.QEASFFGAFLI : TRAI_HUMAN
TRAI_HUMAN   : HITGSSPNSKNEK.ALGRKINSWESSRSGHSFLSNLHLRNGELVIHEKGFYYIYSQTYFRFQEEIKE..KQMVQYIYKYTSYPDPILLMKSARNSCWSKDA.....EYGLYSIYQGGIFELKENDRIFVSVTNEHLIDMD.HEASFFGAFLV : ENU49917

             : 6---------16--------26--------36--------46--------56--------66--------76--------86--------96--------106-------116-------126-------136-------146-------15 :
OrigSeq      : RTPSDKPVAHVVANPQAEGQLQWLNRRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSYQTKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLLFAESGQVYFGIIAL :OrigSeq
cons         : --------EEE---------EEE---HHHHHHH---------EEEE---EEEEEEEEEEE--------EEEEEEEEEEE------EEEEE------------------EEEEEE---EEEE----EEEEE--------------EEEEEEE- :cons
dsc          : -------EEEEE-------EEEEHHHH--EEE---------EEEE-----EEEEEEEEEE-------EEEEEEEEEEEE-----EEEEE-------------------EEEEEE---EEEE-----EEEEE----EEEE-----EEEEEE-- :dsc
mul          : -------HHHHH--------HHHH-----HHHH----------------EEEEEEEEEE---------EEHHHHEEE--------EHHHHH------------------EEE-----EEEE-----EEEE------HH--------E-EH-- :mul
nnssp        : ------------------------------------------EEE----EEEEEEEEEE---------EEEE-HHHHH-------EEHHHHH-------------------------EEEE----EEEEE--------------EEEEEEEE :nnssp
phd          : --------HHH---------EEE---HHHHHHHH--------EEEE---EEEEEEEEEEE--------EEEEEEEEEEE------EEEEE-----------------EEEEEEEE--EEEE----EEEEE--------------EEEEEEE- :phd
pred         : --------EEEE------HHHHHHHH-HHHHHH---------EEEE---EEEEEEEEEE---------------------------------------------------------EEEEE----EEEEEE-------------EEEEE--- :pred
zpred        : -------EEEEE---------EHH------HHE--------EEEEEEEEEEEEEEEEEEE---------EEEEEEEE-------EEEHHHHH-----------------EEEE--EEEEEEH---HEEEEE----EEEE------EEEEHHH :zpred


access       : EEEEEEEBBEBBEEEEEEEEBEBEEEEEEBBBBEBBEBEEEEBBBEEEBBBBBBBEBBBEEEE-EEEEBEBBBEBB-BB-E-E-EBBBBEBBEEEBEEEEEEEEEEEE-B-BB-BBBBBEBEEEEEBBBEBE--EBBEBEEEEEBBBBBB-- : access

PHD Rel      : 99999841110168655654111110234555514434798367504635899998875236799986156777888631268722433137888742168888872357764332246632785488861786322357877335557746 : PHD Rel
Pred Rel     : 00000777566607777766776776668888676667998790989997900856566777899998555585587556788856556665789907799999999876766786656986799588067999866669997867777000 : Predator Rel


dssp         : -------EEEEE------------------EE----EE----EE----EEEEEEEEEEEEEE--------EEEEEEEE------EEEEE--EE--------------EEEEEEEEEEEEEE----EEEEEE--HHHE--------EEEEEE- :dssp
define       : -----EEEEEEE--------EEEE-----------------EEEEEE-EEEEEEEEEEEEEEE----EEEEEEEE--------EEEEEEEEEEEEE--------EEEEEEEEEE--EEEE----EEEEEEEE---EEEE------------- :define
stride       : -------EEEEE------------------EE----EE---EEEE---EEEEEEEEEEEEEE--------EEEEEEEEE----EEEEEEEEEE--------------EEEEEEEEEEEEEE---EEEEEEE--HHHE--------EEEEEE- :stride


Q3 values for 1tnfa  View SS in Rasmol

	dssp	define	stride
phd	75.00	63.82	74.34
dsc	76.97	71.05	76.32
pred	64.47	55.92	61.18
mul	64.47	57.24	61.18
nnssp	69.74	57.89	67.76
zpred	75.66	70.39	75.00
cons	76.32	66.45	75.66