Results for 1vcab-1-AUTO.1


1vcab-1-AUTO.1    : FKIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY : NCA1_CHICK
NCA1_CHICK        : AKPKITYENKTAMELEDQITLTCEASGDPIPSITWKTSTRNISNEEVRSHARVSSLTLKEIQYTDAGEYVCTASNTIGQDSQAMYLEVQ : A46052
A46052            : FKIEISPEYKTIAQIGDSMALTCSTTGCESPLFSWRTQIDSPLNAKVRTEGSKSVLTMEPVSFENEHSYLCTATCGSGKLERSIHVDIY : NCA1_BOVIN
NCA1_BOVIN        : VPPTVQAIVNATANLGQSVTLVCNAEGFPEPTVSWTKDGEQIENEEYLFSDDSSELTIRKVDKNDEAEYVCIAENKAGEQDASIHLKVF : PIGVCAM
PIGVCAM           : VKVEIVPEDKMIAQIGDSASLTCSAPDCESSLFSWRTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIY : CEZC1013
CEZC1013          : DTSDVQIPSEKEVRDGRDVSFECRARTSDNPTVRWARVGGPLPSSA...HDSGGRLTINPVQLSDAGTYICVSDYNGNTVEARATLSVV : RNU81035
RNU81035          : VPPRMLSNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNGQGSNLDGNYHVYQNGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK : C42632
C42632            : KPLEIHSDQEQFDILGGEGEVECEVSGKPAPTVTWKFENNTKIEAGEKYTIALNKLIIKDLSLEDTKKYLCIIVIDTGETKDFYIDFTV : S31978
S31978            : SP......SSLSASVGDRVTITCRTSQTISRYLNWYQQIPGKAPKL.LIFAASTLQTGVPSRFGGSGSGTDTLTISTLQPDDFATYYCQ : JC4025
JC4025            : YPPYISKAKNTGVSVGQKGILSCEASAVPMAEFQWFKEETRLATGLIENKGRMSTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYGP : PGBM_MOUSE
PGBM_MOUSE        : PPQVVTPQQSIQASRGQTVTFTCVATGVPTPIINWRLNWGHIPAHPMTSEGGRGTLIIRDVKEADQGAYTCEAMNSRG.MVFGIPDGVL : MML1L
MML1L             : KPKLLLPLSAKTVLKGDTLLLECFAEGLPTPHIQWSKPGSELPEGRATIEVHEKTLKIENISYQDRGNYRCTANNLLGKASHDFHVTVE : DRU63292
DRU63292          : VLPSIRTELNATADINQAVTLACHADGYPEPTVKWARGNTELESDEYSLNEDGSELTIKDVNKLDEGDYKCIARNKAGERSEEVTLNVF : NCA2_XENLA
NCA2_XENLA        : VPPLIQARVNATANMDESVVLSCDADGFPDPEISWLKKGEPIEDGEISFNEDKSEMTIYRVEKEDEAEYSCIANNQAGEAEAIVLLKVY : CEF15G93
CEF15G93          : EPPIILPQTNNTAVVGDRVELKCYVEASPPASVTWFRRGIAIGTDTGYVVESDGTLVIQSASVEDATIYTCKASNPAGKAEANLQVTVI : A38096
A38096            : GGPRVQVPERTQVHAGRTVRLYCRAAGVPSATITWRKEGGSLPPQARSERTDIATLLIPAITTADAGFYLCVATSPAGTAQARMQVVVL : D87248
D87248            : YEPKIEVPETIQAAKDSSVKLECFALGNPVPDISWRRLDGSPMPGKVKYSNSQATLEIPKFQQEDEGFYECVAGNLRGRNLAKGQLIFY : UNG_HSVSA

                  : 1---------11--------21--------31--------41--------51--------61--------71--------81------- :
OrigSeq           : FKIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY :OrigSeq
cons              : ----EE-----EEE---EEEEEEE-------EEEEEE--------EEEEE---EEEEEEE-------EEEEEEE-------EEEEEEEE :cons
dsc               : --------EEEEEE---EEEEEEEE------EEEEEEE------EEEEEE---EEEEEEEEE-----EEEEEEE-------EEEEEEEE :dsc
mul               : -----------EE------EEEE---------EE---------------------EEEE---------EEEEE----------EEEEEE :mul
nnssp             : ----EE-----EE-----EEEEEE-------EEEEE----------EEE-----EEEEE--------EEEEEEE--------EEEEEEE :nnssp
phd               : ---EEE-----EEE---EEEEEEE--------EEEEE--------EEEEE---EEEEEEE-------EEEEEEE------EEEEEEEE- :phd
pred              : -----------------EEEEEEE----------------------EEE-----EEEE----------EEEE----------------- :pred
zpred             : -----------EEE---EEEEEEE--------EEEE------------------HEEEEEEH------EEEEEE------HHHHEEEEE :zpred


access            : EEEEB-BEEEBBBEBEEEBEBBBEBEE-E-EEBEBBEE-EE--EEEBEBEEEEBEBBBEEBEEEEEEEBBBBBBBEEEEBEBEBEBEBE : access

PHD Rel           : 98256335521444142389986236878874366613787778613564275279984121278825999961589852235788768 : PHD Rel
Pred Rel          : 00889907765557777569986779999988666078989999977677999867767777999988666678777767657766000 : Predator Rel


dssp              : -EEEEE---EEEEE----EEEEEEEE-----EEEEEE--------EEEEE--EEEEEE----HHH--EEEEEEEE--EEEEEEEEEEEE :dssp
define            : EEEE-----EEEE---EEEEEE-EEEE-EEEEEEE---------EEEEEE--EEEEEEE--------EEEEEEE--EEEEE-EEEEEEE :define
stride            : -EEEEE---EEEEE--E-EEEEEEEE-----EEEEEE--------EEEEE--EEEEEE--E-HHH-EEEEEEEEE--EEEEEEEEEEEE :stride


Q3 values for 1vcab-1-AUTO.1  View SS in Rasmol

	dssp	define	stride
phd	78.65	68.54	75.28
dsc	74.16	70.79	73.03
pred	52.81	53.93	49.44
mul	58.43	59.55	55.06
nnssp	74.16	68.54	70.79
zpred	59.55	57.30	58.43
cons	78.65	68.54	75.28