Results for 1vid-1-JAC


1vid-1-JAC    : TKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGPS : ZEU13151
ZEU13151      : LQSDALYQYILETSVYREPQPMKELRRITAKHPWNLMTTSADEGQFLNLLLKLINAKNTMEIGVYTGYSLLSTALALPEDGKILALDINRENYEIGLPIIQKAGVAHKIDFREGPALPLLDQMLQDECHGSFDFIFVDADKDNYHKRLIDLVKFGVIGYDNTLWNGSLVAPPLRKYVRYYRDLNKALAVDPRVEICQLPVGDGITLCRRIS.. : LLLVSFPEP3
LLLVSFPEP3    : MNRPVVKAELVEWMRSSQTQVTGELAEVLNFAKENNIPVIPHEVLYFQMLLSLLKPKRILEIGTAIGFSALVMAQEVP.EAEIVTIDRNPEMIELAKKNLAKYDHRNQIQLKEGDAADVLQEL.....KGPFDLVFMDSAKSEFLPKSLELLSENLILMDDVFQAGEILLPVKRNQRALERGLFDEVFDNPKYMTSVLPLGDGLLMIKKH... : AB000408
AB000408      : LQSEALKQYIYETSAYGEHEQLKELREATTKKYLSGMSVPVDEGRFLSMLLKLMNAKRTLEVGVFTGYSLLSTALALPEDGQVTAIDKDRGAYEIGLPFIQKAGVEDKINFIQSEAPPILNEMLCNDKQPEFDFAFVDADKSHYHEQLLKLVKIGIIAYDNTLWYGLVAKEEVPEPLRMVRTFNKLLSSDLRVEISQISIGDGVTLCRRLC.. : SLASADEN
SLASADEN      : LQSEQLHQYILDTSVFRESEHLKELRKATESHPMSFMGTSPLAGQLLSFMLKTVKPKKTIEVGVFTGYSLLATALSIPDDGKITAVDIDREAYNVGLALIKKAGVESKISFIVSDAMTLLDDLLADGYQGSYDFAFVDADKTNYHERLIELVKVGIIAYDNTLWGGTVALPEVPDFMKNNWVLNEILGSDARIDIAHLPVGDGITFCRRVY.. : MDMC_STRMY
MDMC_STRMY    : TLSPALLDYARSVALR.EDGLLRELHDMTAQLPGRAMQIMPEEAQFLGLLIRLVGARRVLEIGTFTGYSTLCMARALPAGGRIVTCDISDKWPGIGAPFWQRAGVDGLIDLRIGDAARTLAELRERDGDGAFDLVFVDADKAHYYEQALALVRPGLVAIDNTLFFGRVADP.DPDTVAVRT.LNDLLRDDERVDIALLTVADGITLARRRE.. : MXU246572
MXU246572     : ELTQSVLQYIRDSSVR.DNDILRDLREETSKLPLRTMQIPPEQGQLLSLLVRLIGARKTLEVGVFTGYSTLCAALALPADGRVIACDLSEEWVSIARRYWQRAGVADRIEVRLGDAHHSLEALVGSEHRGTFDLAFIDADKEFYYEHALRLVRPGLIILDNTLWSGKVADPGDPETDSLRR.INAKLLTDERVDLSMLPIADGLTLARKR... : HSMAPKP4

              : 4---------14--------24--------34--------44--------54--------64--------74--------84--------94--------104-------114-------124-------134-------144-------154-------164-------174-------184-------194-------204-------214 :
OrigSeq       : TKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGPS :OrigSeq
cons          : --HHHHHHHHHHH------HHHHHHHHHHHH------------HHHHHHHHHHH----EEEEE-----HHHHHHHHH----EEEEEE---HHHHHHHHHHHHH----EEEEE----HHHHHHHHHH-----EEEEEEE---HHHHHHHHHHHH--HEEEE--E------------HHHHHHHHHHH------EEEEEEH---HHHHHHH---- :cons
dsc           : --HHHHHHHHHH--------EEE--------HHHHHHHH------HHHHHHHH----EEEEE------HHHHHHHHHHHHHHHHHEE----HHHHHHHHHHHH-----EEE-----HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HH---------------HHHHHHHHHHHHH----- :dsc
mul           : -H-HHH-EEEE--------HHHHHHHHHHHH-----------HHHHHHHHHHHHH----EEEEEE----HEHHHHHH----EEEEE-----HH---HHHHHHH-HHHH-EE-----HHHHHHHHH------HHHHHHH----HHHHHHHHHHHEEEEE------------------HH------HHHH-----EEEEE-----HHHHH----- :mul
nnssp         : --HHHHHHHHHHH-----HHHHHHHHHHHHH-----EEE----HHHHHHHHHHH-----EEEEEE----HHHHHHH------EEEE----HHHHHHHHHHHH------EEEE---HHHHHHHHHH--------EEEE-----HHHHHHHHHHH---EE----EE-----------HHHHHHHHHHHH-----EEEEEE----HHHHHHH---- :nnssp
phd           : ---HHHHHHHHHHH-----HHHHHHHHHHHH---------HHHHHHHHHHHHHH----EEEEE----HHHHHHHHHH----EEEEEE--HHHHHHHHHHHHHH----EEEEE----HHHHHHHHHH-----EEEEEEE---HHHHHHHHHHHH--EEEEE------EE------HHHHHHHHHHHH------EEEEEEE-----EEEEE---- :phd
pred          : ---HHHHHHHHHH-------HHHHH--HHHHHHH---------HHHHHHHHHHHH---EEEEEEE---HHHHHHHH-----EEEEEE----HHHHHHHHHHHH----EEEEE-----HHHHHHHHH------EEEEEE--------HHHHHHHHHH-----EEEE-----------EEEEE---EEEEEE--------HHHHHHHHHHH---- :pred
zpred         : HHHHHHEEEEEEE-------HHHHHHHHHH-----EEE----HHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEEHHHHHHHHEEEEEH---HHHHHHHHHHHH----EEEEEE----HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEE------HEEEE----------HHHHEEEEEEHHHHEEEE----- :zpred


access        : EEEEBBBEBBBEBBEEEEEEBBEEB-EBBBEBE-EBBEBBEEEBEBBBBBBEBBEBEEBBEBBBBBBBBBBBBBBBBEEEBEBBBBEBEEEBBEBBBEBBEEBEBEBEBEBBBBEBBEBBEEBBEEEEEE-BEBBBBEBEEEEBBEEBBEBBEBBBBBBEBBBBBBEBBBEE-EEBBEBBEBBBEBBBEEBEBBBBBBBBBEBBEBBEEE-EE : access

PHD Rel       : 993789999997431366159999999987522112314714789999999993675258983455558999998916688179984671367889999997455535875237745899999962379513579874673136899999952471686243224311467994244332557663147862236777425772126422699 : PHD Rel
Pred Rel      : 007770099798789999070880677588808705667777778889988983776577555577966899007089980560986907708885887777679775566579997688899877779976668877797778676877878546668966077877567897605665609008808776850050088880887768000 : Predator Rel


dssp          : -HHHHHHHHHHHH-----HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH---EEEEE-----HHHHHHH-------EEEEEE--HHHHHHHHHHHHHH-----EEEEE--HHHHHHHHHHHH----EEEEEE---HHHHHHHHHHHHH---EEEEEEEEE--------HHHHHHHHH---EEEEEEEEE------EEEEEEEEE---- :dssp
define        : HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHEEEE--HHHHHHHHHHHHHHHH-EEEEEEE---HHHHHHHHHHH---EEEEEEEEHHHHHHHHHHHHHHHH---EEEEEEEHHHHHH-HHHHHHEEEE--EEEEE----HHHHHHHHHHHHH-----EEEEEEE-----HHHHHHHHHHH--EEEEEEEE------EEEEEEEEEEEEEE :define
stride        : -HHHHHHHHHHHH-----HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH---EEEEE-----HHHHHHHH------EEEEEE--HHHHHHHHHHHHHH-----EEEEE--HHHHH-HHHHHH----EEEEEE-----HHHHHHHHHHHH--EEEEEEEEE--------HHHHHHHHH---EEEEEEEEE------EEEEEEEEE---- :stride


Q3 values for 1vid-1-JAC  View SS in Rasmol

	dssp	define	stride
phd	78.87	65.73	78.40
dsc	52.11	42.72	52.58
pred	68.08	62.44	70.42
mul	58.22	46.95	59.15
nnssp	72.30	60.09	72.77
zpred	55.40	48.83	54.46
cons	76.06	61.03	75.59