Results for 1vnc-1-JAC


1vnc-1-JAC    : SVTPIPLPKIDEPEEYNTNYILFWNHVGLELNRVTHTVGGPLTGPPLSARALGMLHLAIHDAYFSICPPTDFTTFLSPDTENAAYRLPSPNGANDARQAVAGAALKMLSSLYMKPVEQPNPNPGANISDNAYAQLGLVLDRSVLEAPGGVDRESASFMFGEDVADVFFALLNDPRGASQEGYHPTPGRYKFDDEPTHPVVLIPVDPNNPNGPKMPFRQYHAPFYGKTTKRFATQSEHFLADPPGLRSNADETAEYDDAVRVAIAMGGAQALNSTKRSPWQTAQGLYWAYDGSNLIGTPPRFYNQIVRRIAVTYKKEEDLANSEVNNADFARLFALVDVACTDAGIFSWKEKWEFEFWRPLSGVRDDGRPDHGDPFWLTLGAPATNTNDIPFKPPFPAYPSGHATFGGAVFQMVRRYYNGRVGTWKDDEPDNIAIDMMISEELNGVNRDLRQPYDPTAPIEDQPGIVRTRIVRHFDSAWELMFENAISRIFLGVHWRFDAAAARDILIPTTTKDVYAVDNNGATVFQNVEDIRYTTRGTREDEEGLFPIGGVPLGIEIADEIFNNGLKPTPPEIQPM : EDVANCHLO
EDVANCHLO     : DFTPVELPVVEEDAEYNWNYILFWNNVGLELNRVTHTFGALKAGPPLSPRALGMLQLAVHDAYFAIHPSAGFTTFLTPGAEDGAYRLPDPSYAKDARQAVAGAAIAMLSKLYMKPKVVPR.SP...ISHNAYAQLQHVLDISVTKAPAACDPASSSFIFGKAVATAVFDLLFHKEGADQSGYSPKPGPFKFNDEPTHPVELIPVDANIPDGDKMPRRQYHAPYYGETAKRFGTQTEHMLADPPGIR.CAGEVAEYDDAIREVYAMGGAPGLNTTKRTPHQTVQGMFWAYDGPKLIGTPPRLYNQIVRKIAVTYKKDNDLVNSEVNNADFARLLALVNVAMTDAGIFAWKEKWEFEFWRPLSGVRDDVLPEAAIHSGLASAPQLQNSDEAPFKPPFPAYPSGHATFGAAAFQMVRKYYNGRLGKWATTSRDTIAVEMFVSEELNGVSRDLSNPYDPKRPITDQPGIVPTRMPRRFSSCWEMMFENAVSRIFLGVHWRFDAAAGQDILIPTTKKDVYAVDDKGAALFKNVEDIRYKTKGTRKGHKGLLPIGGVPLGIEIANEIYNNKLSPTPPGEQPM : AMY_BACAM

              : 3---------13--------23--------33--------43--------53--------63--------73--------83--------93--------103-------113-------123-------133-------143-------153-------163-------173-------183-------193-------203-------213-------223-------233-------243-------253-------263-------273-------283-------293-------303-------313-------323-------333-------343-------353-------363-------373-------383-------393-------403-------413-------423-------433-------443-------453-------463-------473-------483-------493-------503-------513-------523-------533-------543-------553-------563-------573--- :
OrigSeq       : SVTPIPLPKIDEPEEYNTNYILFWNHVGLELNRVTHTVGGPLTGPPLSARALGMLHLAIHDAYFSICPPTDFTTFLSPDTENAAYRLPSPNGANDARQAVAGAALKMLSSLYMKPVEQPNPNPGANISDNAYAQLGLVLDRSVLEAPGGVDRESASFMFGEDVADVFFALLNDPRGASQEGYHPTPGRYKFDDEPTHPVVLIPVDPNNPNGPKMPFRQYHAPFYGKTTKRFATQSEHFLADPPGLRSNADETAEYDDAVRVAIAMGGAQALNSTKRSPWQTAQGLYWAYDGSNLIGTPPRFYNQIVRRIAVTYKKEEDLANSEVNNADFARLFALVDVACTDAGIFSWKEKWEFEFWRPLSGVRDDGRPDHGDPFWLTLGAPATNTNDIPFKPPFPAYPSGHATFGGAVFQMVRRYYNGRVGTWKDDEPDNIAIDMMISEELNGVNRDLRQPYDPTAPIEDQPGIVRTRIVRHFDSAWELMFENAISRIFLGVHWRFDAAAARDILIPTTTKDVYAVDNNGATVFQNVEDIRYTTRGTREDEEGLFPIGGVPLGIEIADEIFNNGLKPTPPEIQPM :OrigSeq
cons          : -------------------EEEEEE----EEEEE-EE-----------HHHHHHHHHHHHHHEEEE------EEE------------------HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHEEE----------------HHHHHHHHHHHHH--------------------------EEEEE----------------------------------------------HHHHHHHHHHHHHHHH-------------------EEEE------------HHHHHHHHHHHHHH------------HHHHHHHHHHHH-------H--HHHHHHEH--------------------------------------------------HHHHHHHHHHH--------------EEEEHHHHHH------------------------E--E----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-H---------EEEE-----EEE--HHH-----------------------EHHHHHHH-------------- :cons
dsc           : --------------------EEE------HHHHHHHEE----------HHHHHHHHHHH---EEEE------EEE----HHHHHH-------HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------------------EEEEE-----------HHHHH--------HHHHHHHHHHH-----------HHHHHHHHHHHHHHHH--------------HHHHHEEE-------------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH-------------HHHHH----------------------------HHHHHHHHHHH-------------HHHHHHHHHHHH-----HH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHH--------EEHH---HHHHHHHHHH----HHHHHHHH-----------HHHHHHHHH------------- :dsc
mul           : --------HHHHHH-----EEEEE-----H------E-----------HHHHHHHHHHHH----E--------------------------------HHHHHHHHHHHHHH---------------------HHH-EEEEEEE--------------HHHHHHHHHHHHHH---------------------------EEEE----------------------------------EE------------HHHH---HHHHHHHH--------------------EE----------------EEEEEEE-----------------HHHHHHHHHHH-------H-H----HHH---------------------------------------------------HHHHHHE--------HHHH-----HHHHHHHHHHHH-----------------------EEEE--------HHHHHHHHHHHHHE----HHHHHH-HHEEE----EEEEEE--------------------------------------HHHHH---------------- :mul
nnssp         : -------------------EEEEE-------------------------HHHHHHHHHH----------------------------------HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH-----------------EEE---HHHHHHHHH---------------------------EEEEE------------------------------------------------HHHHHHHHHHHHHH--------------------EE--------------HHHHHHHHHHHHH------------HHHHHHHHHHHHH-----EE--------EE--------------------------------------------------HHHHHHHHHH---------------EEE---------------------------------------HHHHHHHHHH----EEEEEE-----------EE-------EEEE--------------------------------------HHHHHH--------------- :nnssp
phd           : -----------------EEEEEEEE---EEEEEE-EE-----------HHHHHHHHHHHHHHHHEEE-----EEEE-----------------HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHH-EEEEE----------------HHHHHHHHHHHHH--------------------------EEEEE---------------------------------------------HHHHHHHHHHHHHHHHH-------------------EEEEE---------HHHHHHHHHHHHHHEEE-----------HHHHHHHHHEE--EE-------HHHHHHE------------------------------------------------HHHHHHHHHHHHHHH---EE---------EEEEEEHHH------------------------E--E----HHHHHHHHHHHHHHHHHH---HHHHHHHHH---EE------EEEE-----EEE--HHHH----------------------E-HHHHHH-------------- :phd
pred          : -------------------EEEEEE-------------------------HHHHHHHHHHHHEEE-----------------EEEE--------HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHH---------------------HHHHHHHHHH---------------------------EEEEEE------------------------HHHHHHHHHH---------------HHHHHHEEEE---------------------EEEE------------HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH------HHHHHHHHHHH------------------EEEE----------------------------HHHHHHHHHH---------------EEEEHHHHHH-----------------------EEEEEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------EEEEE---------------------------------------EEE----------------- :pred
zpred         : -EEE-----HHHHHHH---EEEEE------HEEEEEEE---------EEHHHHHHHHHHHHHEEEEE----EEEE-----HHEEEEE------HHHHHHHHHHHHHHHHHHHEEEEEE------------HHHHEEEEEEEEEEE---HHH--HHHHHHHHHHHHHHHHHH--------------------------EEEEEEEE--------EEEEEEE---------HHHHHHEEE------------HHHHHHHHHHHHEEE--------------EEEEEEEEE------EEE----EEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------EEHHHHHEEEE----------------HHHHHHHHHHHHH-------------EEEEEE--EEEEEEE-----HHHHHHHHHHHHHEEE---HHHHHHHHHEEEE---EEEEEEHHHHHHHEEHHHHHH------------EEE-----EEEEEHHHH------------EEE :zpred


access        : EE-EBEBEEBEEEEE-BBBBBBBBB-BBBEBEEBBBBBEB-EEEEEBBBEBBBBBBBBBBEBBBBBBBEEEBBBBB-EEBEEBB-EBEEEEEBEEBEEBBBBBBBEBBBEB-BEEEE-EEEEEEBEBBBBBBBBBBBBBEBBBBEBEEEBEEEBBBBBBBEBBBEBBBBBBBEEEEBEEEE-EEEEEEBEBEEEEE-EBBBBBBEBE-EEEEEBE--EBBBEB-EEBBEEBBE-BE-BBEE-EEBEBBBEEBBE-EEBBEBBBBBEBBEBBEEEEE-EEEBBEBBBBB-EBBEBBE--EEBBE-BB-EBBBEBEEEEEBBEBEB-EBEBB-BBBBBBBBBBEBBBBBBEEEBEBEBBEEBEEB-EEB-EEBB-EBBBBBBBEBEEEEEBEBEEEBEB-BEE-BBBBBBBBEBB-EBBEBEBBE--EEEEE-BBBEBBBBEEBEEBB-EBEEE-EEE-EBEE-EEBBBB-BBE-BEBBBEBBBEBBBBBBBBBBBB-BEBBBBEEBBBEEBEEEBBBBEEEBBBBBEBBEEBE-EBEE-EEEEEBBBEBBBBBBBBEBBEEBBEEEBEEEEEEEEEE : access

PHD Rel       : 999887988774113451688887315616753111205788999986166778988764222114448731224157853444668997860469999999999999994167456999998987425778878411233331468988876665222147899999996166556678889999853238998998578744689999998986766776454321112343212236998865751336667879999998334325888789976321313344318855689806699999997622342256765444637989877520112113453221232321111335633458877867886555578878879989999999998887316689999999997224312046886763267621231124565568899999877889993112125642489999999875675403122145686415413257743156625656113042122112245344335643358887330112567413899999888799 : PHD Rel
Pred Rel      : 000000800899999776600000796665587600860998090998056848978088650060090998666709007655009099009788099700000999958808880000099009887788899908456500009909890977765766899078770809999889880099007888998878000000000000099800000098989860885685875568009007797765856768979007699965766990900688886667889976608009786097679908875077776777966688990070086076656658977009550899889897099999988565879978999999000099999999096665708800007799877507000905877778965700889780090999979880900776655556670989909668877000756669899966506799985099599990777567788756687777577607000099066668778000099000000000 : Predator Rel


dssp          : -------------HHHHH-HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH----------E-----HHHE---------HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH------------------E---------EEEEEE--EEEEEEEEE-------HHHH------------------HHH---HHHHHHHHHHHHHHHE----------HHHHHHHHH-----E---E-HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-E--HHHHHH-------------E--E---------E---------HHHHHHHHHHHHHHHHHE---E-----------EEEEE-HHH----EEE---------HHH--EEE----EEEE--HHHHHHHHHHHHHH-----HHHH--HHHHE-E------E-E-----E-E--HHH------E--------E---HHHHHHHHHHHHHH-------HHH--- :dssp
define        : ----EEEEE----HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHEEEE---------------EEEEEE----HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH--------EEEEEE---EEEE-----EEEEE-------EEEEEEEEE--------EEEEE--EEEEEEE---------HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHH--------EEEEE-------EEEE----EEEE-HHHHHHHHHHHHHHHHHHH-----------EEEEEEEEEE-------EEEE------------EEEEEEEEEEEE-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHEEEEE----EEEE---EEEEEE--EEEEEEEE--------EEEEHHHHHHHHHHHHHHHHEEEE---EEEE :define
stride        : -------------HHHHH-HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH----------E-----HHHE---------HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH------------------E---------EEEE---------EEEE------HHHHH------------------HHH---HHHHHHHHHHHHHHHE----------HHHHHHHHHH----E---E-HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-E--HHHHHHH------------E--E---------E---------HHHHHHHHHHHHHHHHH----------------EEEEE--------EEE---------HHH--EEE----EEEE--HHHHHHHHHHHHHHH----HHH---HHH-E-E------E-E-----E-E--HHH------EEE--EEEEE---HHHHHHHHHHHHHHH------HHH--- :stride


Q3 values for 1vnc-1-JAC  View SS in Rasmol

	dssp	define	stride
phd	68.58	60.42	68.06
dsc	66.32	59.38	66.15
pred	64.41	57.99	63.89
mul	62.33	51.74	61.28
nnssp	65.28	54.34	66.15
zpred	58.33	53.12	57.29
cons	69.10	61.11	68.92