Results for 1vpt-1-JAC


1vpt-1-JAC    : MDVVSLDKPFMYFEEIDNELDYEPESANEVAKKLPYQGQLKLLLGELFFLSKLQRHGILDGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFVDEEYLRSIKKQLHPSKIILISDVASPSTADLLSNYALQNVMISILNPVASSLKWRCPFPDQWIKDFYIPHGNKMLQPFAPSYSAEMRLLSIYTGENMRLTRVTKSDAVNYEKKMYYLNKIVRNKVVVNFDYPNQEYDYFHMYFMLRTVYCNKTFPTTKAKVLFLQQSIFRFLNIP : PAP2_MYXVA
PAP2_MYXVA    : MEPVSMDKPFMYFDEIDDELEYEPESVNETPKKLPHQGQLKLLLGELFFLSKLQRHGILDGSTIVYIGSAPGTHIKYLRDHFMSMGLVIKWMLIDGRTHDPILEGLRDVILITKFVDEAYIRQLKKQLYPSRVILISDVRSPTTQDLLSNYSLQNIMVSVLKPAASSLKWRCPFPDQWIKDFYVPHGNEMLQPFAPSYSAEMRLLSIYSGTPIRLKCITQQDSSKYEKKMYYLNKIIRNRIIINFDYSNQEYDFFHMYHMLKTVYSNKSFTSNKSKVLHFHQSIFRFLKIP : PAP2_VARV
PAP2_VARV     : MDVVSLDKPFMYFEEIDNELDYEPESANEVAKKLPYQGQLKLLLGELFFLSKLQRHGILDGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFVDEEYLRSIKKQLHPSKIILISDVRSPSTEDLLSNYALQNVMISILNPVASSLKWRCPFPDQWIKDFYIPHGNKMSQPFAPSYSAEMRLLSIYTGENMRLTRVTKSDAVNYEKKMYYLNKIVRNKVVVNFDYPNQEYDYFHMYFMLRTVYCNKTFPTTKAKVLFLQQSIFRFLNIP : MOCDRNAP
MOCDRNAP      : MEAQAMERPLLYFHELTQTQEYDAEVERAARSRFPAQGQLKLLIGELFFLNKLHRREMLAGTTVLYIGSAPGGHIRYLVEHFRALGVPLRWMLLDGRSHDSRLQGLSDCTLVTRFVDERYLMRMRQALRGARVVLISDIRSPSTEDLLYDYALQNSMLSILKPVASSLKWRCPFPDQWLHNFYVVCGKELLQPFAPPFSAELRLLSVHAGAPR.LRCITLATARDYEKKMFYLNNVIRRRIVLNFDYPNQEYDFFHMFHLLNTVLCPRSFDSPTKKVLFLQQSIFRFLGIQ : FPVTKX2
FPVTKX2       : FKELEMTKPYMFFNELVGEEDYNKELE.NSNTKFQGQGQLKLLLGELYFLNTLIKNKTLCSTVIVYIGSAPGSHINFLYHYMDDLKIDLKWILIDGRDHDRSLESLKNVSIIHRFVDEQYLFKLRNMIRKHKIVLISDIRSPTSEDLLHDYALQNQMVSILKPIASSLKWRCPFPDQWIRDFYIPCGDEFLQPFAPPFSAEMRLLSCYSRAPIRLIRIDKNAAIEYEKKRFYLNTKIRPKIVLDFDYPNQKYDYFYMFYILKDIVLPKEFSTYKQKVIFLQEAIFNALNIK : TF21_WHEAT

              : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------157-------167-------177-------187-------197-------207-------217-------227-------237-------247-------257-------267-------277-------287-------2 :
OrigSeq       : MDVVSLDKPFMYFEEIDNELDYEPESANEVAKKLPYQGQLKLLLGELFFLSKLQRHGILDGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFVDEEYLRSIKKQLHPSKIILISDVASPSTADLLSNYALQNVMISILNPVASSLKWRCPFPDQWIKDFYIPHGNKMLQPFAPSYSAEMRLLSIYTGENMRLTRVTKSDAVNYEKKMYYLNKIVRNKVVVNFDYPNQEYDYFHMYFMLRTVYCNKTFPTTKAKVLFLQQSIFRFLNIP :OrigSeq
cons          : ----------EEHHHHH------HHHHHHHHH------HHHHHHHHHHHHHHHHH-------EEEEEE------HHHHHHHHHHHHHHE-EEEE------HHHH---HEEEEEE---HHHHHHHHHHH----EEEEEE-----HHHHHHHHHHHHHHHHHHHHHHH-------------H-EEE--------------HHHHHHHHHH----EEEEEE---HHHHHHHHHHHHHHH---EEEEEE-------HHHHHHHHHHHEEE-------HHHHHHHHHHHHHHH--- :cons
dsc           : --------HHHHHHHHH------HHHHHHHHH--HH--HHHHHHHHHHHHHHHHH-------EEEEE-------HHHHHHHHHHHHHHEEEEEE------HHHHH--HHHHHHHHHHHHHHHHHHHHH---EEEEEE-------HHHHHHHHHHHHEEEE--------EEE--------HH-----------------HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH---EEEEE--------HHHHHHHHHH-------------EEEHHHHHHHHHH--- :dsc
mul           : H--HH-----HHHHHHHHH-H-HHHHHHHHH--------EEEHHHHHHHHHHH---------EEEEE-------EEEE-H-HHHH--HHHHHHE--------------EEEEEEHHHHHHHHHHHHHH---EEEEEE--------HHHHHHH-H--EEEEEE-----------------HHHE-------EE-------HHHH-EEE-------EEEEE-----H-HHHHHHHHHE---EEEEEE--------HHHHHHHHHHHE----------HHHHHHHHHHHHH--- :mul
nnssp         : ----------EEE-----------HHHHHHHHH-----HHHHHHHHHHHHHHHHH-------EEEEE-------HHHHHHHHHH------EEEE-----------HHHHHEE-----HHHHHHHHHHH----EEEEE------HHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHEEE----EEEEEE----HHHHHHHHH---------EEEEE--------HHHHHHHHHHEE-----------EEEHHHHHHHHH--- :nnssp
phd           : ------------HHHHH------HHHHHHHHH------HHHHHHHHHHHHHHHHH-------EEEEEE---HHHHHHHHHHHHHHHHHE-EEEE------HHHH----EEEEEE---HHHHHHHHHHH----EEEEEE-----HHHHHHHHHHHHHHHHHHHHHHH-----------HHH-EEE------------HHHHHHHHHHHH----EEEEEE---HHHHHHHHHHHHHHH---EEEEEE-----HHHHHHHHHHHHHEEE------HHHHHHHHHHHHHHH---- :phd
pred          : ---------EEEE-------------HHHHHHH-----HHHHHHHHHHHHHHHHHH------EEEEEE------EEEEHHHHH-----EEEEEE--------------EEEEEEHHHHHHHHHHHHHH---EEEEEEE----------HHHHHHHHHHEEEHHHHHHHH----------EEEEE--------------HHHHHHHHH------EEEEE-----HHHHHHHHHHHHH---EEEEE--------HHHHHHHHHHHEEE-------HHHHHHHHHHHHHHH--- :pred
zpred         : HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHEEEEEEHHHHHHHHHH-------EEEEEEE-----EEEEEE----HHHHHHEEEEE-------------EEEEEEEEHHHHHHHHHHHH----EEEEEEE------EEEEEHHHHHEEEEEEEE-HHH----EE---------EE-------EEEE----HHHHHHHEE------EEEEEE--HHHHHHHHHHHHHHEEEEEEEEEE-------HHHHHHHHHHHEEE--------HHEEEHHHHHEE----- :zpred


access        : EEBBEBEEBBBBBEEBEEEBE-EEEBEEEBBEEBEEEBEBEBBBBEBBBBBEB-EEEBBEBBBBBBBBEBEEEBBEBBBEBB-BBBBBBEBBBBEBEE-EEBBEBBEEBBBBBEBBEEEBB-EBEEEBEEBEBBBBBEB-EEEEEEBBBE-BBEBBBBBBBEEBBEBBEBEBE-EEEBBEEBBB-BBEEBBEEBBEE-BBEB-BBBBBBB-EBEBBBBBEEEBEE-EEEB-BBBE-B-BEBBBBBE-EEEE-BBBBBBBBBBBBBBEEEBEE-EBEBBBBBEBBB-BBEBE : access

PHD Rel       : 984116875321144112233573676532321764113589987899999987513124846999716973788999999976322201225425875136525675188863454899999999956992699972899881589988889999999563655043125679652111112315742333699917999999987237751485533422358988877787531317898536994201454323112122340478971346689899999981489 : PHD Rel
Pred Rel      : 008609076066557777787577978778870009768980999900084989776580989900958990060987788866668786005509990976666666609706686600999909956966900066007997766668656765760876766875560099990666607669998688899907889967988699876586665876668897677888856676880689999076658707766685778998997889750999888866000 : Predator Rel


dssp          : --EE-------EHHH--------HHHHH--------HHHHHHHHHHHHHHHHHHH-------EEEEE-----HHHHHHHHHHHH-----EEEEEE-----HHH-----EEEEE----HHHHHHHHHHH----EEEEE------HHHHHHHHHHHHHHHHHH---EEEEEE----HHH----EEEE--EEE-----------EEEEEE-------EEEE-HHHHHHHHHHHHHHHH-HHH-EE--------EHHHHHHHHHH-----------HHHHHHHHHHHHHHHH--- :dssp
define        : ---EEEE-------------EEEE-----------HHHHHHHHHHHHHHHHHHHHHH----EEEEEEE---HHHHHHHHHHHHHHEEEEEEEEE--------------EEEEE---HHHHHHHHHHHHH-EEEEEE-EEEE-HHHHHHHHHHHHHHHHHHHH----EEEEEEEE--EEEE-EEEE---EEEEEE-----EEEEEEEEE---EEEEEEEEHHHHHHHHHHHHHHHHH--EEEE--------HHHHHHHHHHHHEEEEEEEEEHHHHHHHHHHHHHHHHHH-- :define
stride        : --EE-------EHHH--------HHHHH--------HHHHHHHHHHHHHHHHHHHH------EEEEE-----HHHHHHHHHHHHH----EEEEEE-----HHH-----EEEEE----HHHHHHHHHHH----EEEEE------HHHHHHHHHHHHHHHHHH---EEEEEE----HHH----EEEE--EEE-----------EEEEEE-------EEEE-HHHHHHHHHHHHHHHHHHHH-EE--------EHHHHHHHHHHH----------HHHHHHHHHHHHHHHH--- :stride


Q3 values for 1vpt-1-JAC  View SS in Rasmol

	dssp	define	stride
phd	74.91	66.67	75.60
dsc	68.73	56.36	69.42
pred	68.38	62.89	69.07
mul	63.23	54.30	63.57
nnssp	72.51	60.82	71.82
zpred	55.33	52.92	55.67
cons	75.26	64.60	75.95